Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15995 and CSW01_16000 are separated by 193 nucleotides CSW01_16000 and CSW01_16005 are separated by 0 nucleotides CSW01_16005 and CSW01_16010 are separated by 241 nucleotides CSW01_16010 and CSW01_16015 are separated by 56 nucleotides
CSW01_15995: CSW01_15995 - DUF645 domain-containing protein, at 363,186 to 363,338
_15995
CSW01_16000: CSW01_16000 - type II toxin-antitoxin system RelE/ParE family toxin, at 363,532 to 363,867
_16000
CSW01_16005: CSW01_16005 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 363,868 to 364,110
_16005
CSW01_16010: CSW01_16010 - N-acetyltransferase, at 364,352 to 364,861
_16010
CSW01_16015: CSW01_16015 - hypothetical protein, at 364,918 to 365,571
_16015
Position (kb) 363
364
365 Strain fitness (log2 ratio) -2
-1
0
1 at 362.870 kb on - strand at 362.906 kb on - strand at 362.952 kb on - strand at 362.981 kb on - strand at 363.197 kb on + strand at 363.305 kb on - strand, within CSW01_15995 at 363.413 kb on - strand at 364.431 kb on - strand, within CSW01_16010 at 364.553 kb on - strand, within CSW01_16010 at 364.553 kb on - strand, within CSW01_16010 at 364.553 kb on - strand, within CSW01_16010 at 364.569 kb on + strand, within CSW01_16010 at 364.593 kb on + strand, within CSW01_16010 at 364.593 kb on + strand, within CSW01_16010 at 364.593 kb on + strand, within CSW01_16010 at 364.593 kb on + strand, within CSW01_16010 at 364.593 kb on + strand, within CSW01_16010 at 364.600 kb on + strand, within CSW01_16010 at 364.601 kb on - strand, within CSW01_16010 at 364.601 kb on - strand, within CSW01_16010 at 364.601 kb on - strand, within CSW01_16010 at 364.601 kb on - strand, within CSW01_16010 at 364.601 kb on - strand, within CSW01_16010 at 364.601 kb on - strand, within CSW01_16010 at 364.601 kb on - strand, within CSW01_16010 at 364.601 kb on - strand, within CSW01_16010 at 364.601 kb on - strand, within CSW01_16010 at 364.644 kb on - strand, within CSW01_16010 at 364.651 kb on + strand, within CSW01_16010 at 364.651 kb on + strand, within CSW01_16010 at 364.651 kb on + strand, within CSW01_16010 at 364.651 kb on + strand, within CSW01_16010 at 364.651 kb on + strand, within CSW01_16010 at 364.659 kb on - strand, within CSW01_16010 at 364.659 kb on - strand, within CSW01_16010 at 364.659 kb on - strand, within CSW01_16010 at 364.659 kb on - strand, within CSW01_16010 at 364.659 kb on - strand, within CSW01_16010 at 364.666 kb on + strand, within CSW01_16010 at 364.876 kb on - strand at 364.876 kb on - strand at 365.031 kb on + strand, within CSW01_16015 at 365.097 kb on - strand, within CSW01_16015 at 365.106 kb on - strand, within CSW01_16015
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 362,870 - -2.6 362,906 - -0.4 362,952 - -0.1 362,981 - -1.3 363,197 + -1.5 363,305 - CSW01_15995 0.78 -0.4 363,413 - -0.2 364,431 - CSW01_16010 0.15 -0.5 364,553 - CSW01_16010 0.39 +1.0 364,553 - CSW01_16010 0.39 +0.9 364,553 - CSW01_16010 0.39 +1.0 364,569 + CSW01_16010 0.43 -1.1 364,593 + CSW01_16010 0.47 +1.1 364,593 + CSW01_16010 0.47 -1.8 364,593 + CSW01_16010 0.47 +0.0 364,593 + CSW01_16010 0.47 +0.7 364,593 + CSW01_16010 0.47 -1.4 364,600 + CSW01_16010 0.49 +0.1 364,601 - CSW01_16010 0.49 +0.9 364,601 - CSW01_16010 0.49 +1.5 364,601 - CSW01_16010 0.49 -1.2 364,601 - CSW01_16010 0.49 +0.3 364,601 - CSW01_16010 0.49 +0.7 364,601 - CSW01_16010 0.49 +0.2 364,601 - CSW01_16010 0.49 -1.1 364,601 - CSW01_16010 0.49 -1.0 364,601 - CSW01_16010 0.49 +1.4 364,644 - CSW01_16010 0.57 -0.3 364,651 + CSW01_16010 0.59 +1.4 364,651 + CSW01_16010 0.59 -0.3 364,651 + CSW01_16010 0.59 +1.0 364,651 + CSW01_16010 0.59 -0.0 364,651 + CSW01_16010 0.59 +0.4 364,659 - CSW01_16010 0.60 +0.3 364,659 - CSW01_16010 0.60 +0.3 364,659 - CSW01_16010 0.60 -0.5 364,659 - CSW01_16010 0.60 -1.1 364,659 - CSW01_16010 0.60 -0.8 364,666 + CSW01_16010 0.62 +0.5 364,876 - +0.5 364,876 - -2.3 365,031 + CSW01_16015 0.17 +0.2 365,097 - CSW01_16015 0.27 -0.8 365,106 - CSW01_16015 0.29 -1.3
Or see this region's nucleotide sequence