Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15255 and CSW01_15260 are separated by 109 nucleotides CSW01_15260 and CSW01_15265 are separated by 105 nucleotides CSW01_15265 and CSW01_15270 are separated by 10 nucleotides
CSW01_15255: CSW01_15255 - copper-binding protein, at 278,804 to 279,313
_15255
CSW01_15260: CSW01_15260 - hypothetical protein, at 279,423 to 279,833
_15260
CSW01_15265: CSW01_15265 - N-acetyltransferase, at 279,939 to 280,481
_15265
CSW01_15270: CSW01_15270 - transcriptional regulator, at 280,492 to 281,670
_15270
Position (kb) 279
280
281 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 278.942 kb on + strand, within CSW01_15255 at 279.078 kb on - strand, within CSW01_15255 at 279.269 kb on - strand at 279.296 kb on - strand at 279.346 kb on - strand at 279.463 kb on - strand at 279.514 kb on - strand, within CSW01_15260 at 279.608 kb on + strand, within CSW01_15260 at 279.608 kb on + strand, within CSW01_15260 at 279.608 kb on + strand, within CSW01_15260 at 279.609 kb on - strand, within CSW01_15260 at 279.623 kb on + strand, within CSW01_15260 at 279.630 kb on + strand, within CSW01_15260 at 279.749 kb on - strand, within CSW01_15260 at 279.749 kb on - strand, within CSW01_15260 at 279.790 kb on - strand, within CSW01_15260 at 279.792 kb on + strand, within CSW01_15260 at 279.805 kb on - strand at 279.919 kb on - strand at 279.966 kb on - strand at 280.050 kb on + strand, within CSW01_15265 at 280.050 kb on + strand, within CSW01_15265 at 280.133 kb on - strand, within CSW01_15265 at 280.138 kb on - strand, within CSW01_15265 at 280.176 kb on + strand, within CSW01_15265 at 280.176 kb on + strand, within CSW01_15265 at 280.176 kb on + strand, within CSW01_15265 at 280.184 kb on - strand, within CSW01_15265 at 280.194 kb on + strand, within CSW01_15265 at 280.216 kb on + strand, within CSW01_15265 at 280.402 kb on - strand, within CSW01_15265 at 280.516 kb on + strand at 280.574 kb on + strand at 280.643 kb on - strand, within CSW01_15270 at 280.667 kb on - strand, within CSW01_15270 at 280.799 kb on - strand, within CSW01_15270 at 280.821 kb on + strand, within CSW01_15270 at 280.862 kb on - strand, within CSW01_15270 at 280.874 kb on + strand, within CSW01_15270 at 280.906 kb on - strand, within CSW01_15270 at 280.963 kb on + strand, within CSW01_15270 at 280.984 kb on + strand, within CSW01_15270 at 280.984 kb on + strand, within CSW01_15270 at 280.992 kb on - strand, within CSW01_15270 at 280.995 kb on + strand, within CSW01_15270 at 281.036 kb on + strand, within CSW01_15270 at 281.036 kb on + strand, within CSW01_15270 at 281.044 kb on - strand, within CSW01_15270 at 281.163 kb on - strand, within CSW01_15270 at 281.163 kb on - strand, within CSW01_15270 at 281.173 kb on - strand, within CSW01_15270 at 281.179 kb on + strand, within CSW01_15270 at 281.179 kb on + strand, within CSW01_15270 at 281.279 kb on + strand, within CSW01_15270 at 281.314 kb on - strand, within CSW01_15270 at 281.322 kb on + strand, within CSW01_15270 at 281.332 kb on - strand, within CSW01_15270 at 281.341 kb on + strand, within CSW01_15270 at 281.341 kb on + strand, within CSW01_15270 at 281.349 kb on - strand, within CSW01_15270 at 281.436 kb on - strand, within CSW01_15270 at 281.436 kb on - strand, within CSW01_15270
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 278,942 + CSW01_15255 0.27 +2.2 279,078 - CSW01_15255 0.54 -2.8 279,269 - -2.2 279,296 - +0.0 279,346 - +0.3 279,463 - +0.3 279,514 - CSW01_15260 0.22 -1.6 279,608 + CSW01_15260 0.45 +0.5 279,608 + CSW01_15260 0.45 -2.1 279,608 + CSW01_15260 0.45 +0.5 279,609 - CSW01_15260 0.45 +1.2 279,623 + CSW01_15260 0.49 -1.8 279,630 + CSW01_15260 0.50 -1.1 279,749 - CSW01_15260 0.79 -2.3 279,749 - CSW01_15260 0.79 -2.4 279,790 - CSW01_15260 0.89 +0.9 279,792 + CSW01_15260 0.90 +0.8 279,805 - +0.4 279,919 - +1.1 279,966 - -0.5 280,050 + CSW01_15265 0.20 +1.4 280,050 + CSW01_15265 0.20 -2.0 280,133 - CSW01_15265 0.36 -1.4 280,138 - CSW01_15265 0.37 +0.6 280,176 + CSW01_15265 0.44 -0.3 280,176 + CSW01_15265 0.44 +0.7 280,176 + CSW01_15265 0.44 -2.5 280,184 - CSW01_15265 0.45 -1.2 280,194 + CSW01_15265 0.47 -1.6 280,216 + CSW01_15265 0.51 -1.6 280,402 - CSW01_15265 0.85 +0.9 280,516 + -0.7 280,574 + -0.4 280,643 - CSW01_15270 0.13 -1.8 280,667 - CSW01_15270 0.15 -0.8 280,799 - CSW01_15270 0.26 +0.3 280,821 + CSW01_15270 0.28 +0.6 280,862 - CSW01_15270 0.31 -1.5 280,874 + CSW01_15270 0.32 +0.3 280,906 - CSW01_15270 0.35 +0.5 280,963 + CSW01_15270 0.40 -0.1 280,984 + CSW01_15270 0.42 -1.1 280,984 + CSW01_15270 0.42 -1.8 280,992 - CSW01_15270 0.42 -0.0 280,995 + CSW01_15270 0.43 -1.3 281,036 + CSW01_15270 0.46 +1.7 281,036 + CSW01_15270 0.46 +0.3 281,044 - CSW01_15270 0.47 -2.3 281,163 - CSW01_15270 0.57 +0.6 281,163 - CSW01_15270 0.57 -1.5 281,173 - CSW01_15270 0.58 +1.2 281,179 + CSW01_15270 0.58 -2.2 281,179 + CSW01_15270 0.58 -0.5 281,279 + CSW01_15270 0.67 -0.3 281,314 - CSW01_15270 0.70 -1.3 281,322 + CSW01_15270 0.70 -1.0 281,332 - CSW01_15270 0.71 -0.4 281,341 + CSW01_15270 0.72 -3.5 281,341 + CSW01_15270 0.72 +1.0 281,349 - CSW01_15270 0.73 -2.4 281,436 - CSW01_15270 0.80 -0.5 281,436 - CSW01_15270 0.80 -0.9
Or see this region's nucleotide sequence