Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15145 and CSW01_15150 are separated by 80 nucleotides CSW01_15150 and CSW01_15155 are separated by 117 nucleotides CSW01_15155 and CSW01_15160 are separated by 244 nucleotides
CSW01_15145: CSW01_15145 - acetate kinase, at 256,236 to 257,429
_15145
CSW01_15150: CSW01_15150 - hypothetical protein, at 257,510 to 257,806
_15150
CSW01_15155: CSW01_15155 - phosphoribosyl-AMP cyclohydrolase, at 257,924 to 258,493
_15155
CSW01_15160: CSW01_15160 - sensor histidine kinase, at 258,738 to 260,387
_15160
Position (kb) 257
258 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 256.562 kb on - strand, within CSW01_15145 at 256.676 kb on - strand, within CSW01_15145 at 256.773 kb on + strand, within CSW01_15145 at 256.875 kb on - strand, within CSW01_15145 at 257.009 kb on - strand, within CSW01_15145 at 257.079 kb on - strand, within CSW01_15145 at 257.170 kb on + strand, within CSW01_15145 at 257.178 kb on - strand, within CSW01_15145 at 257.242 kb on - strand, within CSW01_15145 at 257.266 kb on + strand, within CSW01_15145 at 257.274 kb on - strand, within CSW01_15145 at 257.352 kb on - strand at 257.354 kb on + strand at 257.362 kb on - strand at 257.362 kb on - strand at 257.474 kb on - strand at 257.510 kb on + strand at 257.518 kb on - strand at 257.524 kb on - strand at 257.534 kb on - strand at 257.534 kb on - strand at 257.534 kb on - strand at 257.571 kb on - strand, within CSW01_15150 at 257.637 kb on + strand, within CSW01_15150 at 257.637 kb on + strand, within CSW01_15150 at 257.674 kb on + strand, within CSW01_15150 at 257.785 kb on + strand at 257.840 kb on + strand at 257.840 kb on + strand at 257.954 kb on + strand at 257.962 kb on - strand at 257.962 kb on - strand at 258.010 kb on - strand, within CSW01_15155 at 258.064 kb on + strand, within CSW01_15155 at 258.171 kb on + strand, within CSW01_15155 at 258.221 kb on + strand, within CSW01_15155 at 258.221 kb on + strand, within CSW01_15155 at 258.221 kb on + strand, within CSW01_15155 at 258.229 kb on - strand, within CSW01_15155 at 258.231 kb on + strand, within CSW01_15155 at 258.303 kb on + strand, within CSW01_15155 at 258.398 kb on + strand, within CSW01_15155 at 258.401 kb on + strand, within CSW01_15155 at 258.444 kb on - strand at 258.444 kb on - strand at 258.472 kb on + strand at 258.480 kb on - strand at 258.504 kb on + strand at 258.504 kb on + strand at 258.512 kb on - strand at 258.512 kb on - strand at 258.512 kb on - strand at 258.523 kb on + strand at 258.523 kb on + strand at 258.531 kb on - strand at 258.531 kb on - strand at 258.533 kb on + strand at 258.533 kb on + strand at 258.560 kb on - strand at 258.631 kb on - strand at 258.638 kb on + strand at 258.648 kb on + strand at 258.718 kb on + strand at 258.745 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 256,562 - CSW01_15145 0.27 -1.9 256,676 - CSW01_15145 0.37 -0.7 256,773 + CSW01_15145 0.45 -0.3 256,875 - CSW01_15145 0.54 +0.9 257,009 - CSW01_15145 0.65 +1.0 257,079 - CSW01_15145 0.71 -0.5 257,170 + CSW01_15145 0.78 -0.1 257,178 - CSW01_15145 0.79 +0.1 257,242 - CSW01_15145 0.84 +1.7 257,266 + CSW01_15145 0.86 +0.8 257,274 - CSW01_15145 0.87 -0.8 257,352 - -1.6 257,354 + -0.0 257,362 - -4.1 257,362 - +0.1 257,474 - +0.7 257,510 + -0.6 257,518 - -2.5 257,524 - +0.1 257,534 - -1.9 257,534 - -1.2 257,534 - -1.2 257,571 - CSW01_15150 0.21 +0.1 257,637 + CSW01_15150 0.43 -1.2 257,637 + CSW01_15150 0.43 -2.1 257,674 + CSW01_15150 0.55 -0.3 257,785 + +2.2 257,840 + +1.4 257,840 + +0.9 257,954 + -3.7 257,962 - +1.1 257,962 - -1.6 258,010 - CSW01_15155 0.15 +1.2 258,064 + CSW01_15155 0.25 -0.0 258,171 + CSW01_15155 0.43 -1.1 258,221 + CSW01_15155 0.52 -3.0 258,221 + CSW01_15155 0.52 +0.7 258,221 + CSW01_15155 0.52 +0.7 258,229 - CSW01_15155 0.54 -0.7 258,231 + CSW01_15155 0.54 -1.0 258,303 + CSW01_15155 0.66 +1.2 258,398 + CSW01_15155 0.83 +0.9 258,401 + CSW01_15155 0.84 -1.0 258,444 - -2.3 258,444 - -0.0 258,472 + +0.3 258,480 - +0.1 258,504 + -0.1 258,504 + +1.1 258,512 - -0.5 258,512 - +0.8 258,512 - +0.1 258,523 + +1.2 258,523 + -2.8 258,531 - +1.3 258,531 - +0.5 258,533 + +0.4 258,533 + +0.3 258,560 - +0.2 258,631 - -1.6 258,638 + +0.3 258,648 + +0.6 258,718 + +1.8 258,745 - +0.7
Or see this region's nucleotide sequence