Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15065

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15055 and CSW01_15060 are separated by 213 nucleotidesCSW01_15060 and CSW01_15065 overlap by 10 nucleotidesCSW01_15065 and CSW01_15070 are separated by 120 nucleotides CSW01_15055: CSW01_15055 - Bcr/CflA family drug resistance efflux transporter, at 232,444 to 233,688 _15055 CSW01_15060: CSW01_15060 - hypothetical protein, at 233,902 to 234,168 _15060 CSW01_15065: CSW01_15065 - GGDEF domain-containing protein, at 234,159 to 235,238 _15065 CSW01_15070: CSW01_15070 - thermolabile hemolysin, at 235,359 to 236,615 _15070 Position (kb) 234 235 236Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 233.174 kb on - strand, within CSW01_15055at 233.192 kb on + strand, within CSW01_15055at 233.199 kb on - strand, within CSW01_15055at 233.200 kb on - strand, within CSW01_15055at 233.297 kb on - strand, within CSW01_15055at 233.316 kb on - strand, within CSW01_15055at 233.319 kb on + strand, within CSW01_15055at 233.319 kb on + strand, within CSW01_15055at 233.327 kb on - strand, within CSW01_15055at 233.331 kb on + strand, within CSW01_15055at 233.366 kb on + strand, within CSW01_15055at 233.536 kb on + strand, within CSW01_15055at 233.544 kb on - strand, within CSW01_15055at 233.595 kb on - strandat 233.738 kb on + strandat 233.849 kb on + strandat 233.904 kb on - strandat 233.961 kb on + strand, within CSW01_15060at 233.969 kb on - strand, within CSW01_15060at 234.062 kb on - strand, within CSW01_15060at 234.099 kb on - strand, within CSW01_15060at 234.108 kb on + strand, within CSW01_15060at 234.186 kb on - strandat 234.205 kb on + strandat 234.213 kb on - strandat 234.270 kb on + strand, within CSW01_15065at 234.289 kb on + strand, within CSW01_15065at 234.362 kb on + strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.370 kb on - strand, within CSW01_15065at 234.482 kb on + strand, within CSW01_15065at 234.541 kb on + strand, within CSW01_15065at 234.581 kb on + strand, within CSW01_15065at 234.752 kb on - strand, within CSW01_15065at 234.779 kb on + strand, within CSW01_15065at 235.190 kb on + strandat 235.193 kb on - strandat 235.267 kb on + strandat 235.267 kb on + strandat 235.275 kb on - strandat 235.331 kb on - strandat 235.433 kb on - strandat 235.457 kb on + strandat 235.458 kb on + strandat 235.486 kb on - strand, within CSW01_15070at 235.488 kb on + strand, within CSW01_15070at 235.496 kb on - strand, within CSW01_15070at 235.496 kb on - strand, within CSW01_15070at 235.515 kb on + strand, within CSW01_15070at 235.527 kb on - strand, within CSW01_15070at 235.577 kb on + strand, within CSW01_15070at 235.601 kb on + strand, within CSW01_15070at 235.609 kb on + strand, within CSW01_15070at 235.609 kb on + strand, within CSW01_15070at 235.609 kb on - strand, within CSW01_15070at 235.610 kb on - strand, within CSW01_15070at 235.617 kb on - strand, within CSW01_15070at 235.617 kb on - strand, within CSW01_15070at 235.762 kb on + strand, within CSW01_15070at 235.798 kb on + strand, within CSW01_15070at 235.945 kb on - strand, within CSW01_15070at 235.950 kb on - strand, within CSW01_15070at 235.982 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.013 kb on + strand, within CSW01_15070at 236.021 kb on - strand, within CSW01_15070at 236.021 kb on - strand, within CSW01_15070at 236.021 kb on - strand, within CSW01_15070at 236.021 kb on - strand, within CSW01_15070at 236.028 kb on + strand, within CSW01_15070at 236.053 kb on + strand, within CSW01_15070at 236.101 kb on - strand, within CSW01_15070at 236.104 kb on + strand, within CSW01_15070at 236.158 kb on - strand, within CSW01_15070at 236.159 kb on - strand, within CSW01_15070at 236.190 kb on - strand, within CSW01_15070at 236.195 kb on + strand, within CSW01_15070at 236.208 kb on + strand, within CSW01_15070at 236.216 kb on - strand, within CSW01_15070

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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233,174 - CSW01_15055 0.59 +0.1
233,192 + CSW01_15055 0.60 +0.9
233,199 - CSW01_15055 0.61 -2.8
233,200 - CSW01_15055 0.61 +0.3
233,297 - CSW01_15055 0.69 -2.3
233,316 - CSW01_15055 0.70 -1.9
233,319 + CSW01_15055 0.70 -1.2
233,319 + CSW01_15055 0.70 +1.2
233,327 - CSW01_15055 0.71 +0.3
233,331 + CSW01_15055 0.71 +0.4
233,366 + CSW01_15055 0.74 +0.1
233,536 + CSW01_15055 0.88 +1.6
233,544 - CSW01_15055 0.88 +0.6
233,595 - -0.5
233,738 + -0.7
233,849 + +1.2
233,904 - -0.4
233,961 + CSW01_15060 0.22 -1.0
233,969 - CSW01_15060 0.25 +1.4
234,062 - CSW01_15060 0.60 +0.5
234,099 - CSW01_15060 0.74 -1.3
234,108 + CSW01_15060 0.77 -2.2
234,186 - -3.3
234,205 + -1.2
234,213 - -0.8
234,270 + CSW01_15065 0.10 +1.9
234,289 + CSW01_15065 0.12 +0.2
234,362 + CSW01_15065 0.19 -0.8
234,370 - CSW01_15065 0.20 -2.3
234,370 - CSW01_15065 0.20 +0.1
234,370 - CSW01_15065 0.20 +0.2
234,370 - CSW01_15065 0.20 -1.6
234,482 + CSW01_15065 0.30 -0.8
234,541 + CSW01_15065 0.35 -2.1
234,581 + CSW01_15065 0.39 -2.3
234,752 - CSW01_15065 0.55 +1.7
234,779 + CSW01_15065 0.57 +0.5
235,190 + -3.2
235,193 - -4.1
235,267 + +1.2
235,267 + -2.0
235,275 - -3.3
235,331 - -2.2
235,433 - -0.1
235,457 + -0.3
235,458 + +0.2
235,486 - CSW01_15070 0.10 -0.9
235,488 + CSW01_15070 0.10 +0.5
235,496 - CSW01_15070 0.11 +0.5
235,496 - CSW01_15070 0.11 +0.3
235,515 + CSW01_15070 0.12 -0.0
235,527 - CSW01_15070 0.13 -0.6
235,577 + CSW01_15070 0.17 +0.4
235,601 + CSW01_15070 0.19 -0.3
235,609 + CSW01_15070 0.20 -0.4
235,609 + CSW01_15070 0.20 -0.6
235,609 - CSW01_15070 0.20 +0.8
235,610 - CSW01_15070 0.20 +0.8
235,617 - CSW01_15070 0.21 -1.5
235,617 - CSW01_15070 0.21 -1.7
235,762 + CSW01_15070 0.32 -0.8
235,798 + CSW01_15070 0.35 -0.4
235,945 - CSW01_15070 0.47 -0.8
235,950 - CSW01_15070 0.47 -0.6
235,982 + CSW01_15070 0.50 -0.1
236,013 + CSW01_15070 0.52 +0.5
236,013 + CSW01_15070 0.52 -0.6
236,013 + CSW01_15070 0.52 +0.1
236,013 + CSW01_15070 0.52 -1.1
236,013 + CSW01_15070 0.52 +0.6
236,021 - CSW01_15070 0.53 +0.8
236,021 - CSW01_15070 0.53 -2.6
236,021 - CSW01_15070 0.53 +0.3
236,021 - CSW01_15070 0.53 -0.0
236,028 + CSW01_15070 0.53 -3.5
236,053 + CSW01_15070 0.55 -1.0
236,101 - CSW01_15070 0.59 -3.2
236,104 + CSW01_15070 0.59 -0.5
236,158 - CSW01_15070 0.64 -0.2
236,159 - CSW01_15070 0.64 -1.5
236,190 - CSW01_15070 0.66 -3.5
236,195 + CSW01_15070 0.67 +0.4
236,208 + CSW01_15070 0.68 +0.3
236,216 - CSW01_15070 0.68 -2.8

Or see this region's nucleotide sequence