Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15050

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15045 and CSW01_15050 are separated by 77 nucleotidesCSW01_15050 and CSW01_15055 are separated by 394 nucleotides CSW01_15045: CSW01_15045 - hypothetical protein, at 229,333 to 230,382 _15045 CSW01_15050: CSW01_15050 - Na+/H+ antiporter, at 230,460 to 232,049 _15050 CSW01_15055: CSW01_15055 - Bcr/CflA family drug resistance efflux transporter, at 232,444 to 233,688 _15055 Position (kb) 230 231 232 233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 229.481 kb on - strand, within CSW01_15045at 229.596 kb on + strand, within CSW01_15045at 229.702 kb on + strand, within CSW01_15045at 229.796 kb on - strand, within CSW01_15045at 229.796 kb on - strand, within CSW01_15045at 229.799 kb on + strand, within CSW01_15045at 229.799 kb on + strand, within CSW01_15045at 229.889 kb on - strand, within CSW01_15045at 229.889 kb on - strand, within CSW01_15045at 230.068 kb on - strand, within CSW01_15045at 230.085 kb on + strand, within CSW01_15045at 230.085 kb on + strand, within CSW01_15045at 230.197 kb on + strand, within CSW01_15045at 230.258 kb on + strand, within CSW01_15045at 230.309 kb on + strandat 230.309 kb on - strandat 230.317 kb on - strandat 230.350 kb on - strandat 230.417 kb on - strandat 230.488 kb on + strandat 230.509 kb on + strandat 230.517 kb on - strandat 230.541 kb on + strandat 230.586 kb on + strandat 230.586 kb on + strandat 230.586 kb on + strandat 230.594 kb on - strandat 230.594 kb on - strandat 230.720 kb on - strand, within CSW01_15050at 230.720 kb on - strand, within CSW01_15050at 230.727 kb on + strand, within CSW01_15050at 230.758 kb on + strand, within CSW01_15050at 230.761 kb on - strand, within CSW01_15050at 230.807 kb on + strand, within CSW01_15050at 230.824 kb on - strand, within CSW01_15050at 230.865 kb on + strand, within CSW01_15050at 230.999 kb on + strand, within CSW01_15050at 231.079 kb on + strand, within CSW01_15050at 231.084 kb on + strand, within CSW01_15050at 231.087 kb on - strand, within CSW01_15050at 231.087 kb on - strand, within CSW01_15050at 231.218 kb on + strand, within CSW01_15050at 231.218 kb on + strand, within CSW01_15050at 231.221 kb on - strand, within CSW01_15050at 231.226 kb on - strand, within CSW01_15050at 231.226 kb on - strand, within CSW01_15050at 231.228 kb on + strand, within CSW01_15050at 231.297 kb on + strand, within CSW01_15050at 231.338 kb on - strand, within CSW01_15050at 231.344 kb on - strand, within CSW01_15050at 231.392 kb on + strand, within CSW01_15050at 231.399 kb on - strand, within CSW01_15050at 231.401 kb on + strand, within CSW01_15050at 231.414 kb on + strand, within CSW01_15050at 231.432 kb on + strand, within CSW01_15050at 231.554 kb on - strand, within CSW01_15050at 231.643 kb on - strand, within CSW01_15050at 231.695 kb on - strand, within CSW01_15050at 231.723 kb on - strand, within CSW01_15050at 231.775 kb on - strand, within CSW01_15050at 231.775 kb on - strand, within CSW01_15050at 231.805 kb on - strand, within CSW01_15050at 231.811 kb on + strand, within CSW01_15050at 231.811 kb on + strand, within CSW01_15050at 231.875 kb on + strand, within CSW01_15050at 231.881 kb on + strand, within CSW01_15050at 231.881 kb on + strand, within CSW01_15050at 231.881 kb on + strand, within CSW01_15050at 231.884 kb on - strand, within CSW01_15050at 231.884 kb on - strand, within CSW01_15050at 231.886 kb on + strand, within CSW01_15050at 231.889 kb on - strand, within CSW01_15050at 231.889 kb on - strand, within CSW01_15050at 231.889 kb on - strand, within CSW01_15050at 231.889 kb on - strand, within CSW01_15050at 231.894 kb on - strandat 231.948 kb on + strandat 231.948 kb on + strandat 231.948 kb on + strandat 232.116 kb on - strandat 232.127 kb on - strandat 232.146 kb on + strandat 232.146 kb on + strandat 232.167 kb on + strandat 232.232 kb on + strandat 232.232 kb on + strandat 232.248 kb on + strandat 232.256 kb on - strandat 232.256 kb on - strandat 232.256 kb on - strandat 232.256 kb on - strandat 232.256 kb on - strandat 232.263 kb on + strandat 232.271 kb on - strandat 232.271 kb on - strandat 232.271 kb on - strandat 232.309 kb on + strandat 232.337 kb on + strandat 232.343 kb on + strandat 232.345 kb on - strandat 232.347 kb on - strandat 232.351 kb on + strandat 232.351 kb on + strandat 232.442 kb on + strandat 232.484 kb on + strandat 232.486 kb on + strandat 232.492 kb on - strandat 232.518 kb on - strandat 232.523 kb on - strandat 232.538 kb on - strandat 232.570 kb on - strand, within CSW01_15055at 232.588 kb on + strand, within CSW01_15055at 232.711 kb on + strand, within CSW01_15055at 232.770 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.927 kb on + strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 232.935 kb on - strand, within CSW01_15055at 233.020 kb on - strand, within CSW01_15055

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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229,481 - CSW01_15045 0.14 -1.5
229,596 + CSW01_15045 0.25 -2.9
229,702 + CSW01_15045 0.35 -0.2
229,796 - CSW01_15045 0.44 +0.5
229,796 - CSW01_15045 0.44 +0.9
229,799 + CSW01_15045 0.44 -0.5
229,799 + CSW01_15045 0.44 -2.0
229,889 - CSW01_15045 0.53 +1.2
229,889 - CSW01_15045 0.53 -0.3
230,068 - CSW01_15045 0.70 +0.4
230,085 + CSW01_15045 0.72 -2.8
230,085 + CSW01_15045 0.72 -0.4
230,197 + CSW01_15045 0.82 +0.8
230,258 + CSW01_15045 0.88 -2.7
230,309 + +0.2
230,309 - -2.5
230,317 - +0.7
230,350 - +0.5
230,417 - -2.4
230,488 + +1.2
230,509 + -0.2
230,517 - +1.2
230,541 + -0.4
230,586 + -0.0
230,586 + -0.9
230,586 + -1.5
230,594 - +0.9
230,594 - -0.3
230,720 - CSW01_15050 0.16 +0.9
230,720 - CSW01_15050 0.16 -1.0
230,727 + CSW01_15050 0.17 +0.7
230,758 + CSW01_15050 0.19 +1.3
230,761 - CSW01_15050 0.19 -1.3
230,807 + CSW01_15050 0.22 -0.1
230,824 - CSW01_15050 0.23 +0.0
230,865 + CSW01_15050 0.25 -0.7
230,999 + CSW01_15050 0.34 -1.6
231,079 + CSW01_15050 0.39 +0.6
231,084 + CSW01_15050 0.39 -1.6
231,087 - CSW01_15050 0.39 -0.6
231,087 - CSW01_15050 0.39 -0.6
231,218 + CSW01_15050 0.48 +0.6
231,218 + CSW01_15050 0.48 -0.2
231,221 - CSW01_15050 0.48 +0.1
231,226 - CSW01_15050 0.48 +0.5
231,226 - CSW01_15050 0.48 +0.2
231,228 + CSW01_15050 0.48 -0.6
231,297 + CSW01_15050 0.53 -0.9
231,338 - CSW01_15050 0.55 -1.6
231,344 - CSW01_15050 0.56 +0.9
231,392 + CSW01_15050 0.59 +0.1
231,399 - CSW01_15050 0.59 +0.1
231,401 + CSW01_15050 0.59 +1.3
231,414 + CSW01_15050 0.60 +1.0
231,432 + CSW01_15050 0.61 -0.6
231,554 - CSW01_15050 0.69 -0.5
231,643 - CSW01_15050 0.74 +0.3
231,695 - CSW01_15050 0.78 -1.8
231,723 - CSW01_15050 0.79 -0.8
231,775 - CSW01_15050 0.83 -2.2
231,775 - CSW01_15050 0.83 +0.5
231,805 - CSW01_15050 0.85 -0.5
231,811 + CSW01_15050 0.85 +0.6
231,811 + CSW01_15050 0.85 -0.5
231,875 + CSW01_15050 0.89 -3.7
231,881 + CSW01_15050 0.89 +1.5
231,881 + CSW01_15050 0.89 -1.8
231,881 + CSW01_15050 0.89 +0.5
231,884 - CSW01_15050 0.90 +0.1
231,884 - CSW01_15050 0.90 +1.8
231,886 + CSW01_15050 0.90 +0.3
231,889 - CSW01_15050 0.90 -3.0
231,889 - CSW01_15050 0.90 -2.2
231,889 - CSW01_15050 0.90 +0.3
231,889 - CSW01_15050 0.90 -0.2
231,894 - +0.4
231,948 + +1.1
231,948 + +1.4
231,948 + +0.6
232,116 - +0.3
232,127 - -0.1
232,146 + +1.7
232,146 + +0.3
232,167 + -2.2
232,232 + +0.5
232,232 + -2.6
232,248 + -1.5
232,256 - -0.2
232,256 - -4.2
232,256 - +0.6
232,256 - +0.2
232,256 - -2.0
232,263 + +0.2
232,271 - +0.8
232,271 - -2.0
232,271 - -2.2
232,309 + -3.3
232,337 + +0.6
232,343 + -3.9
232,345 - -1.6
232,347 - -0.9
232,351 + -1.2
232,351 + -0.1
232,442 + -0.5
232,484 + -2.1
232,486 + +1.6
232,492 - +1.2
232,518 - -0.2
232,523 - -1.1
232,538 - -0.2
232,570 - CSW01_15055 0.10 -0.8
232,588 + CSW01_15055 0.12 -0.2
232,711 + CSW01_15055 0.21 +0.0
232,770 + CSW01_15055 0.26 +1.4
232,927 + CSW01_15055 0.39 -0.3
232,927 + CSW01_15055 0.39 +1.1
232,927 + CSW01_15055 0.39 +0.3
232,927 + CSW01_15055 0.39 -2.5
232,927 + CSW01_15055 0.39 +1.0
232,927 + CSW01_15055 0.39 +1.1
232,927 + CSW01_15055 0.39 -2.3
232,935 - CSW01_15055 0.39 +1.2
232,935 - CSW01_15055 0.39 -0.2
232,935 - CSW01_15055 0.39 -1.2
232,935 - CSW01_15055 0.39 +1.2
232,935 - CSW01_15055 0.39 -0.7
233,020 - CSW01_15055 0.46 -1.1

Or see this region's nucleotide sequence