Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14905 and CSW01_14910 are separated by 143 nucleotides CSW01_14910 and CSW01_14915 are separated by 358 nucleotides CSW01_14915 and CSW01_14920 are separated by 387 nucleotides CSW01_14920 and CSW01_14925 are separated by 234 nucleotides
CSW01_14905: CSW01_14905 - flavohemoprotein, at 202,116 to 203,300
_14905
CSW01_14910: CSW01_14910 - cold-shock protein, at 203,444 to 203,653
_14910
CSW01_14915: CSW01_14915 - ribosome alternative rescue factor ArfA, at 204,012 to 204,239
_14915
CSW01_14920: CSW01_14920 - NADH:ubiquinone oxidoreductase, at 204,627 to 205,004
_14920
CSW01_14925: CSW01_14925 - hypothetical protein, at 205,239 to 205,517
_14925
Position (kb) 204
205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 203.023 kb on - strand, within CSW01_14905 at 203.055 kb on + strand, within CSW01_14905 at 203.083 kb on - strand, within CSW01_14905 at 203.099 kb on - strand, within CSW01_14905 at 203.190 kb on + strand at 203.200 kb on + strand at 203.200 kb on + strand at 203.276 kb on - strand at 203.295 kb on + strand at 203.303 kb on - strand at 203.303 kb on - strand at 203.550 kb on + strand, within CSW01_14910 at 203.550 kb on + strand, within CSW01_14910 at 203.728 kb on + strand at 203.802 kb on + strand at 203.802 kb on + strand at 203.802 kb on + strand at 203.823 kb on - strand at 203.996 kb on + strand at 203.999 kb on - strand at 204.047 kb on - strand, within CSW01_14915 at 204.108 kb on + strand, within CSW01_14915 at 204.205 kb on + strand, within CSW01_14915 at 204.255 kb on + strand at 204.263 kb on - strand at 204.265 kb on + strand at 204.360 kb on - strand at 204.689 kb on - strand, within CSW01_14920 at 204.794 kb on + strand, within CSW01_14920 at 204.827 kb on - strand, within CSW01_14920 at 205.038 kb on + strand at 205.038 kb on + strand at 205.038 kb on + strand at 205.038 kb on + strand at 205.046 kb on - strand at 205.048 kb on + strand at 205.116 kb on + strand at 205.186 kb on + strand at 205.194 kb on - strand at 205.194 kb on - strand at 205.194 kb on - strand at 205.194 kb on - strand at 205.194 kb on - strand at 205.202 kb on + strand at 205.202 kb on + strand at 205.203 kb on + strand at 205.234 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 203,023 - CSW01_14905 0.77 +0.7 203,055 + CSW01_14905 0.79 +0.5 203,083 - CSW01_14905 0.82 -1.0 203,099 - CSW01_14905 0.83 +0.5 203,190 + +0.4 203,200 + +2.3 203,200 + -0.2 203,276 - +0.3 203,295 + -0.3 203,303 - +1.1 203,303 - +1.1 203,550 + CSW01_14910 0.50 -0.3 203,550 + CSW01_14910 0.50 -1.1 203,728 + +0.2 203,802 + -2.5 203,802 + -0.3 203,802 + -3.0 203,823 - -0.5 203,996 + +1.7 203,999 - -3.2 204,047 - CSW01_14915 0.15 +1.3 204,108 + CSW01_14915 0.42 -3.0 204,205 + CSW01_14915 0.85 +0.6 204,255 + -1.4 204,263 - +0.9 204,265 + -0.4 204,360 - +0.4 204,689 - CSW01_14920 0.16 +0.9 204,794 + CSW01_14920 0.44 -0.6 204,827 - CSW01_14920 0.53 -0.6 205,038 + +0.8 205,038 + +1.0 205,038 + +1.8 205,038 + +2.1 205,046 - +0.5 205,048 + -1.6 205,116 + +0.6 205,186 + +0.5 205,194 - +2.2 205,194 - +1.1 205,194 - +0.5 205,194 - -1.7 205,194 - -2.9 205,202 + -1.6 205,202 + -3.0 205,203 + +3.5 205,234 + +1.5
Or see this region's nucleotide sequence