Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14905

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14900 and CSW01_14905 are separated by 190 nucleotidesCSW01_14905 and CSW01_14910 are separated by 143 nucleotidesCSW01_14910 and CSW01_14915 are separated by 358 nucleotides CSW01_14900: CSW01_14900 - regulatory protein LuxO, at 200,333 to 201,925 _14900 CSW01_14905: CSW01_14905 - flavohemoprotein, at 202,116 to 203,300 _14905 CSW01_14910: CSW01_14910 - cold-shock protein, at 203,444 to 203,653 _14910 CSW01_14915: CSW01_14915 - ribosome alternative rescue factor ArfA, at 204,012 to 204,239 _14915 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 201.180 kb on + strand, within CSW01_14900at 201.185 kb on + strand, within CSW01_14900at 201.188 kb on - strand, within CSW01_14900at 201.188 kb on - strand, within CSW01_14900at 201.188 kb on - strand, within CSW01_14900at 201.193 kb on - strand, within CSW01_14900at 201.193 kb on - strand, within CSW01_14900at 201.217 kb on + strand, within CSW01_14900at 201.217 kb on + strand, within CSW01_14900at 201.217 kb on + strand, within CSW01_14900at 201.225 kb on - strand, within CSW01_14900at 201.263 kb on - strand, within CSW01_14900at 201.266 kb on + strand, within CSW01_14900at 201.354 kb on + strand, within CSW01_14900at 201.362 kb on + strand, within CSW01_14900at 201.385 kb on - strand, within CSW01_14900at 201.611 kb on + strand, within CSW01_14900at 201.625 kb on + strand, within CSW01_14900at 201.727 kb on + strand, within CSW01_14900at 201.728 kb on + strand, within CSW01_14900at 201.766 kb on + strandat 201.766 kb on + strandat 201.774 kb on - strandat 201.774 kb on - strandat 201.782 kb on + strandat 201.791 kb on + strandat 201.799 kb on - strandat 201.992 kb on - strandat 202.066 kb on + strandat 202.074 kb on - strandat 202.123 kb on + strandat 202.123 kb on + strandat 202.123 kb on + strandat 202.123 kb on + strandat 202.123 kb on + strandat 202.123 kb on + strandat 202.123 kb on + strandat 202.123 kb on + strandat 202.131 kb on - strandat 202.131 kb on - strandat 202.131 kb on - strandat 202.133 kb on + strandat 202.177 kb on + strandat 202.222 kb on + strandat 202.284 kb on - strand, within CSW01_14905at 202.429 kb on - strand, within CSW01_14905at 202.453 kb on + strand, within CSW01_14905at 202.453 kb on + strand, within CSW01_14905at 202.460 kb on - strand, within CSW01_14905at 202.475 kb on + strand, within CSW01_14905at 202.476 kb on + strand, within CSW01_14905at 202.483 kb on - strand, within CSW01_14905at 202.532 kb on + strand, within CSW01_14905at 202.554 kb on + strand, within CSW01_14905at 202.602 kb on + strand, within CSW01_14905at 202.627 kb on + strand, within CSW01_14905at 202.627 kb on + strand, within CSW01_14905at 202.659 kb on + strand, within CSW01_14905at 202.677 kb on + strand, within CSW01_14905at 202.685 kb on - strand, within CSW01_14905at 202.823 kb on - strand, within CSW01_14905at 202.833 kb on + strand, within CSW01_14905at 202.833 kb on + strand, within CSW01_14905at 202.852 kb on - strand, within CSW01_14905at 202.861 kb on + strand, within CSW01_14905at 202.869 kb on - strand, within CSW01_14905at 202.869 kb on - strand, within CSW01_14905at 202.962 kb on + strand, within CSW01_14905at 202.962 kb on + strand, within CSW01_14905at 202.970 kb on - strand, within CSW01_14905at 202.978 kb on - strand, within CSW01_14905at 203.023 kb on - strand, within CSW01_14905at 203.055 kb on + strand, within CSW01_14905at 203.083 kb on - strand, within CSW01_14905at 203.099 kb on - strand, within CSW01_14905at 203.190 kb on + strandat 203.200 kb on + strandat 203.200 kb on + strandat 203.276 kb on - strandat 203.295 kb on + strandat 203.303 kb on - strandat 203.303 kb on - strandat 203.550 kb on + strand, within CSW01_14910at 203.550 kb on + strand, within CSW01_14910at 203.728 kb on + strandat 203.802 kb on + strandat 203.802 kb on + strandat 203.802 kb on + strandat 203.823 kb on - strandat 203.996 kb on + strandat 203.999 kb on - strandat 204.047 kb on - strand, within CSW01_14915at 204.108 kb on + strand, within CSW01_14915at 204.205 kb on + strand, within CSW01_14915at 204.255 kb on + strandat 204.263 kb on - strandat 204.265 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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201,180 + CSW01_14900 0.53 -0.9
201,185 + CSW01_14900 0.53 +0.8
201,188 - CSW01_14900 0.54 +0.0
201,188 - CSW01_14900 0.54 +0.7
201,188 - CSW01_14900 0.54 +0.7
201,193 - CSW01_14900 0.54 -0.8
201,193 - CSW01_14900 0.54 +0.7
201,217 + CSW01_14900 0.55 -3.6
201,217 + CSW01_14900 0.55 -0.5
201,217 + CSW01_14900 0.55 +0.8
201,225 - CSW01_14900 0.56 +0.8
201,263 - CSW01_14900 0.58 +0.5
201,266 + CSW01_14900 0.59 +0.6
201,354 + CSW01_14900 0.64 +0.2
201,362 + CSW01_14900 0.65 +1.0
201,385 - CSW01_14900 0.66 +0.1
201,611 + CSW01_14900 0.80 -2.0
201,625 + CSW01_14900 0.81 +1.8
201,727 + CSW01_14900 0.88 -2.6
201,728 + CSW01_14900 0.88 -2.5
201,766 + -0.5
201,766 + +2.0
201,774 - -0.1
201,774 - +1.0
201,782 + -0.8
201,791 + -2.3
201,799 - +0.9
201,992 - +1.1
202,066 + +0.1
202,074 - +1.1
202,123 + +0.4
202,123 + +1.5
202,123 + -1.7
202,123 + +1.4
202,123 + +0.0
202,123 + +0.2
202,123 + +0.7
202,123 + -0.1
202,131 - -2.7
202,131 - -1.1
202,131 - -2.8
202,133 + +1.0
202,177 + -1.8
202,222 + -1.1
202,284 - CSW01_14905 0.14 -3.0
202,429 - CSW01_14905 0.26 -1.0
202,453 + CSW01_14905 0.28 -0.3
202,453 + CSW01_14905 0.28 -0.5
202,460 - CSW01_14905 0.29 +0.6
202,475 + CSW01_14905 0.30 +0.0
202,476 + CSW01_14905 0.30 -2.5
202,483 - CSW01_14905 0.31 -2.6
202,532 + CSW01_14905 0.35 -1.8
202,554 + CSW01_14905 0.37 -1.0
202,602 + CSW01_14905 0.41 +1.7
202,627 + CSW01_14905 0.43 -0.3
202,627 + CSW01_14905 0.43 +1.6
202,659 + CSW01_14905 0.46 -0.3
202,677 + CSW01_14905 0.47 -1.7
202,685 - CSW01_14905 0.48 -1.8
202,823 - CSW01_14905 0.60 -0.3
202,833 + CSW01_14905 0.61 -1.3
202,833 + CSW01_14905 0.61 -2.3
202,852 - CSW01_14905 0.62 +0.2
202,861 + CSW01_14905 0.63 +0.4
202,869 - CSW01_14905 0.64 -0.7
202,869 - CSW01_14905 0.64 +1.7
202,962 + CSW01_14905 0.71 -0.3
202,962 + CSW01_14905 0.71 +0.9
202,970 - CSW01_14905 0.72 -0.6
202,978 - CSW01_14905 0.73 +0.4
203,023 - CSW01_14905 0.77 +0.7
203,055 + CSW01_14905 0.79 +0.5
203,083 - CSW01_14905 0.82 -1.0
203,099 - CSW01_14905 0.83 +0.5
203,190 + +0.4
203,200 + +2.3
203,200 + -0.2
203,276 - +0.3
203,295 + -0.3
203,303 - +1.1
203,303 - +1.1
203,550 + CSW01_14910 0.50 -0.3
203,550 + CSW01_14910 0.50 -1.1
203,728 + +0.2
203,802 + -2.5
203,802 + -0.3
203,802 + -3.0
203,823 - -0.5
203,996 + +1.7
203,999 - -3.2
204,047 - CSW01_14915 0.15 +1.3
204,108 + CSW01_14915 0.42 -3.0
204,205 + CSW01_14915 0.85 +0.6
204,255 + -1.4
204,263 - +0.9
204,265 + -0.4

Or see this region's nucleotide sequence