Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14885

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14880 and CSW01_14885 are separated by 645 nucleotidesCSW01_14885 and CSW01_14890 are separated by 250 nucleotides CSW01_14880: CSW01_14880 - DsbA family protein, at 195,299 to 195,952 _14880 CSW01_14885: CSW01_14885 - NupC/NupG family nucleoside CNT transporter, at 196,598 to 197,806 _14885 CSW01_14890: CSW01_14890 - peptidase T, at 198,057 to 199,289 _14890 Position (kb) 196 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 195.601 kb on - strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.751 kb on + strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.787 kb on + strand, within CSW01_14880at 195.829 kb on + strand, within CSW01_14880at 195.909 kb on + strandat 195.909 kb on + strandat 196.051 kb on - strandat 196.096 kb on - strandat 196.108 kb on - strandat 196.158 kb on + strandat 196.227 kb on - strandat 196.387 kb on + strandat 196.446 kb on + strandat 196.454 kb on - strandat 196.528 kb on - strandat 196.636 kb on + strandat 196.760 kb on + strand, within CSW01_14885at 196.784 kb on - strand, within CSW01_14885at 196.920 kb on + strand, within CSW01_14885at 196.921 kb on + strand, within CSW01_14885at 197.019 kb on - strand, within CSW01_14885at 197.079 kb on + strand, within CSW01_14885at 197.079 kb on + strand, within CSW01_14885at 197.079 kb on + strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.087 kb on - strand, within CSW01_14885at 197.095 kb on + strand, within CSW01_14885at 197.127 kb on + strand, within CSW01_14885at 197.127 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.150 kb on + strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.158 kb on - strand, within CSW01_14885at 197.208 kb on + strand, within CSW01_14885at 197.208 kb on + strand, within CSW01_14885at 197.208 kb on + strand, within CSW01_14885at 197.231 kb on + strand, within CSW01_14885at 197.377 kb on - strand, within CSW01_14885at 197.392 kb on + strand, within CSW01_14885at 197.392 kb on + strand, within CSW01_14885at 197.392 kb on + strand, within CSW01_14885at 197.392 kb on + strand, within CSW01_14885at 197.400 kb on - strand, within CSW01_14885at 197.468 kb on + strand, within CSW01_14885at 197.477 kb on + strand, within CSW01_14885at 197.477 kb on + strand, within CSW01_14885at 197.477 kb on + strand, within CSW01_14885at 197.652 kb on + strand, within CSW01_14885at 197.658 kb on + strand, within CSW01_14885at 197.699 kb on + strandat 197.707 kb on - strandat 197.943 kb on - strandat 198.015 kb on + strandat 198.015 kb on + strandat 198.180 kb on - strandat 198.244 kb on + strand, within CSW01_14890at 198.301 kb on + strand, within CSW01_14890at 198.301 kb on + strand, within CSW01_14890at 198.301 kb on + strand, within CSW01_14890at 198.309 kb on - strand, within CSW01_14890at 198.309 kb on - strand, within CSW01_14890at 198.361 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.430 kb on + strand, within CSW01_14890at 198.438 kb on - strand, within CSW01_14890at 198.438 kb on - strand, within CSW01_14890at 198.438 kb on - strand, within CSW01_14890at 198.439 kb on - strand, within CSW01_14890at 198.459 kb on + strand, within CSW01_14890at 198.467 kb on - strand, within CSW01_14890at 198.467 kb on - strand, within CSW01_14890at 198.680 kb on + strand, within CSW01_14890at 198.715 kb on + strand, within CSW01_14890at 198.752 kb on + strand, within CSW01_14890at 198.775 kb on - strand, within CSW01_14890

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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195,601 - CSW01_14880 0.46 +0.7
195,745 + CSW01_14880 0.68 -0.9
195,745 + CSW01_14880 0.68 -0.4
195,745 + CSW01_14880 0.68 -1.8
195,745 + CSW01_14880 0.68 -2.0
195,745 + CSW01_14880 0.68 -2.1
195,745 + CSW01_14880 0.68 -0.4
195,745 + CSW01_14880 0.68 +0.4
195,745 + CSW01_14880 0.68 -2.4
195,745 + CSW01_14880 0.68 +0.2
195,745 + CSW01_14880 0.68 -0.1
195,745 + CSW01_14880 0.68 +0.7
195,745 + CSW01_14880 0.68 -0.4
195,745 + CSW01_14880 0.68 -0.1
195,745 + CSW01_14880 0.68 -0.2
195,745 + CSW01_14880 0.68 -0.7
195,745 + CSW01_14880 0.68 +0.7
195,745 + CSW01_14880 0.68 -2.5
195,751 + CSW01_14880 0.69 -1.8
195,753 - CSW01_14880 0.69 +0.0
195,753 - CSW01_14880 0.69 +0.2
195,753 - CSW01_14880 0.69 -0.4
195,753 - CSW01_14880 0.69 +0.9
195,787 + CSW01_14880 0.75 -0.6
195,829 + CSW01_14880 0.81 -1.8
195,909 + -3.5
195,909 + -1.2
196,051 - +0.1
196,096 - +0.4
196,108 - +0.6
196,158 + -1.1
196,227 - +0.1
196,387 + +0.5
196,446 + -1.2
196,454 - -1.0
196,528 - -2.1
196,636 + +0.6
196,760 + CSW01_14885 0.13 +1.2
196,784 - CSW01_14885 0.15 +0.1
196,920 + CSW01_14885 0.27 +0.3
196,921 + CSW01_14885 0.27 -0.4
197,019 - CSW01_14885 0.35 -0.2
197,079 + CSW01_14885 0.40 +0.8
197,079 + CSW01_14885 0.40 -3.1
197,079 + CSW01_14885 0.40 +0.4
197,087 - CSW01_14885 0.40 -1.4
197,087 - CSW01_14885 0.40 +0.2
197,087 - CSW01_14885 0.40 -2.0
197,087 - CSW01_14885 0.40 +0.1
197,087 - CSW01_14885 0.40 +0.6
197,095 + CSW01_14885 0.41 -0.3
197,127 + CSW01_14885 0.44 -0.0
197,127 + CSW01_14885 0.44 -0.5
197,150 + CSW01_14885 0.46 -0.8
197,150 + CSW01_14885 0.46 +0.0
197,150 + CSW01_14885 0.46 -3.1
197,150 + CSW01_14885 0.46 +0.1
197,150 + CSW01_14885 0.46 -3.5
197,150 + CSW01_14885 0.46 +1.3
197,158 - CSW01_14885 0.46 +0.7
197,158 - CSW01_14885 0.46 -0.5
197,158 - CSW01_14885 0.46 -2.8
197,158 - CSW01_14885 0.46 +0.8
197,158 - CSW01_14885 0.46 -0.8
197,158 - CSW01_14885 0.46 -2.5
197,158 - CSW01_14885 0.46 +0.4
197,158 - CSW01_14885 0.46 +1.1
197,208 + CSW01_14885 0.50 +0.5
197,208 + CSW01_14885 0.50 +0.1
197,208 + CSW01_14885 0.50 -1.8
197,231 + CSW01_14885 0.52 +0.8
197,377 - CSW01_14885 0.64 -0.0
197,392 + CSW01_14885 0.66 +0.2
197,392 + CSW01_14885 0.66 -0.2
197,392 + CSW01_14885 0.66 -0.6
197,392 + CSW01_14885 0.66 -1.2
197,400 - CSW01_14885 0.66 +1.0
197,468 + CSW01_14885 0.72 -0.5
197,477 + CSW01_14885 0.73 -0.2
197,477 + CSW01_14885 0.73 -1.2
197,477 + CSW01_14885 0.73 -0.5
197,652 + CSW01_14885 0.87 +1.3
197,658 + CSW01_14885 0.88 -2.9
197,699 + -0.9
197,707 - -1.4
197,943 - +0.9
198,015 + +0.1
198,015 + -0.1
198,180 - +1.5
198,244 + CSW01_14890 0.15 -0.4
198,301 + CSW01_14890 0.20 +1.5
198,301 + CSW01_14890 0.20 -2.1
198,301 + CSW01_14890 0.20 +0.2
198,309 - CSW01_14890 0.20 -0.1
198,309 - CSW01_14890 0.20 -2.9
198,361 + CSW01_14890 0.25 -2.7
198,430 + CSW01_14890 0.30 +1.9
198,430 + CSW01_14890 0.30 +0.6
198,430 + CSW01_14890 0.30 -0.1
198,430 + CSW01_14890 0.30 -1.9
198,430 + CSW01_14890 0.30 +1.2
198,430 + CSW01_14890 0.30 +0.6
198,430 + CSW01_14890 0.30 -0.2
198,430 + CSW01_14890 0.30 +0.8
198,438 - CSW01_14890 0.31 -0.7
198,438 - CSW01_14890 0.31 +0.5
198,438 - CSW01_14890 0.31 +0.4
198,439 - CSW01_14890 0.31 +0.7
198,459 + CSW01_14890 0.33 -0.7
198,467 - CSW01_14890 0.33 +0.3
198,467 - CSW01_14890 0.33 +0.3
198,680 + CSW01_14890 0.51 +1.5
198,715 + CSW01_14890 0.53 -0.8
198,752 + CSW01_14890 0.56 -0.4
198,775 - CSW01_14890 0.58 +0.4

Or see this region's nucleotide sequence