Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14870

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14865 and CSW01_14870 are separated by 284 nucleotidesCSW01_14870 and CSW01_14875 are separated by 56 nucleotidesCSW01_14875 and CSW01_14880 are separated by 275 nucleotides CSW01_14865: CSW01_14865 - MoxR family ATPase, at 191,588 to 192,544 _14865 CSW01_14870: CSW01_14870 - methyl-accepting chemotaxis protein, at 192,829 to 194,763 _14870 CSW01_14875: CSW01_14875 - chromosome partitioning protein ParA, at 194,820 to 195,023 _14875 CSW01_14880: CSW01_14880 - DsbA family protein, at 195,299 to 195,952 _14880 Position (kb) 192 193 194 195Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 191.892 kb on + strand, within CSW01_14865at 191.930 kb on - strand, within CSW01_14865at 192.034 kb on - strand, within CSW01_14865at 192.082 kb on + strand, within CSW01_14865at 192.150 kb on + strand, within CSW01_14865at 192.150 kb on + strand, within CSW01_14865at 192.218 kb on + strand, within CSW01_14865at 192.249 kb on - strand, within CSW01_14865at 192.334 kb on + strand, within CSW01_14865at 192.433 kb on + strand, within CSW01_14865at 192.510 kb on - strandat 192.573 kb on + strandat 192.814 kb on - strandat 192.869 kb on + strandat 192.872 kb on - strandat 192.969 kb on - strandat 192.969 kb on - strandat 192.969 kb on - strandat 192.969 kb on - strandat 192.977 kb on - strandat 192.983 kb on + strandat 192.991 kb on - strandat 192.991 kb on - strandat 192.991 kb on - strandat 192.993 kb on + strandat 193.162 kb on + strand, within CSW01_14870at 193.241 kb on + strand, within CSW01_14870at 193.341 kb on - strand, within CSW01_14870at 193.422 kb on - strand, within CSW01_14870at 193.470 kb on + strand, within CSW01_14870at 193.472 kb on + strand, within CSW01_14870at 193.485 kb on - strand, within CSW01_14870at 193.549 kb on + strand, within CSW01_14870at 193.617 kb on + strand, within CSW01_14870at 193.647 kb on + strand, within CSW01_14870at 193.691 kb on + strand, within CSW01_14870at 193.699 kb on - strand, within CSW01_14870at 193.699 kb on - strand, within CSW01_14870at 193.722 kb on + strand, within CSW01_14870at 193.795 kb on + strand, within CSW01_14870at 193.844 kb on + strand, within CSW01_14870at 193.852 kb on - strand, within CSW01_14870at 193.852 kb on - strand, within CSW01_14870at 193.930 kb on + strand, within CSW01_14870at 193.987 kb on + strand, within CSW01_14870at 194.009 kb on - strand, within CSW01_14870at 194.061 kb on - strand, within CSW01_14870at 194.205 kb on - strand, within CSW01_14870at 194.256 kb on + strand, within CSW01_14870at 194.287 kb on - strand, within CSW01_14870at 194.374 kb on + strand, within CSW01_14870at 194.374 kb on + strand, within CSW01_14870at 194.494 kb on + strand, within CSW01_14870at 194.494 kb on + strand, within CSW01_14870at 194.530 kb on + strand, within CSW01_14870at 194.596 kb on + strandat 194.622 kb on - strandat 194.624 kb on + strandat 194.624 kb on + strandat 194.750 kb on + strandat 194.750 kb on + strandat 194.750 kb on + strandat 194.758 kb on - strandat 194.758 kb on - strandat 194.758 kb on - strandat 194.758 kb on - strandat 194.760 kb on + strandat 194.812 kb on + strandat 194.886 kb on + strand, within CSW01_14875at 194.959 kb on + strand, within CSW01_14875at 195.024 kb on + strandat 195.048 kb on - strandat 195.186 kb on - strandat 195.434 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.444 kb on + strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.452 kb on - strand, within CSW01_14880at 195.456 kb on + strand, within CSW01_14880at 195.502 kb on + strand, within CSW01_14880at 195.502 kb on + strand, within CSW01_14880at 195.533 kb on - strand, within CSW01_14880at 195.560 kb on + strand, within CSW01_14880at 195.593 kb on + strand, within CSW01_14880at 195.594 kb on - strand, within CSW01_14880at 195.594 kb on - strand, within CSW01_14880at 195.594 kb on - strand, within CSW01_14880at 195.601 kb on - strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.745 kb on + strand, within CSW01_14880at 195.751 kb on + strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880at 195.753 kb on - strand, within CSW01_14880

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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191,892 + CSW01_14865 0.32 +0.7
191,930 - CSW01_14865 0.36 +1.1
192,034 - CSW01_14865 0.47 +0.5
192,082 + CSW01_14865 0.52 +1.0
192,150 + CSW01_14865 0.59 -2.7
192,150 + CSW01_14865 0.59 -2.2
192,218 + CSW01_14865 0.66 +1.4
192,249 - CSW01_14865 0.69 -0.0
192,334 + CSW01_14865 0.78 -1.5
192,433 + CSW01_14865 0.88 -0.2
192,510 - +1.2
192,573 + -0.0
192,814 - +0.6
192,869 + -2.4
192,872 - -0.1
192,969 - -0.3
192,969 - -0.5
192,969 - -0.4
192,969 - -1.5
192,977 - -3.2
192,983 + -0.1
192,991 - +0.7
192,991 - -1.7
192,991 - -2.7
192,993 + -1.2
193,162 + CSW01_14870 0.17 +1.5
193,241 + CSW01_14870 0.21 -2.9
193,341 - CSW01_14870 0.26 -0.5
193,422 - CSW01_14870 0.31 -0.5
193,470 + CSW01_14870 0.33 +1.4
193,472 + CSW01_14870 0.33 -1.5
193,485 - CSW01_14870 0.34 -1.4
193,549 + CSW01_14870 0.37 -3.7
193,617 + CSW01_14870 0.41 +0.7
193,647 + CSW01_14870 0.42 +0.8
193,691 + CSW01_14870 0.45 +0.2
193,699 - CSW01_14870 0.45 -1.0
193,699 - CSW01_14870 0.45 +0.0
193,722 + CSW01_14870 0.46 +1.1
193,795 + CSW01_14870 0.50 +0.8
193,844 + CSW01_14870 0.52 +0.9
193,852 - CSW01_14870 0.53 +0.9
193,852 - CSW01_14870 0.53 -0.3
193,930 + CSW01_14870 0.57 -3.6
193,987 + CSW01_14870 0.60 +0.3
194,009 - CSW01_14870 0.61 +0.9
194,061 - CSW01_14870 0.64 -2.7
194,205 - CSW01_14870 0.71 +0.2
194,256 + CSW01_14870 0.74 +0.9
194,287 - CSW01_14870 0.75 +0.7
194,374 + CSW01_14870 0.80 +0.1
194,374 + CSW01_14870 0.80 -0.6
194,494 + CSW01_14870 0.86 +0.8
194,494 + CSW01_14870 0.86 -0.7
194,530 + CSW01_14870 0.88 -2.8
194,596 + +0.6
194,622 - +1.6
194,624 + +1.6
194,624 + -1.1
194,750 + -0.4
194,750 + -0.3
194,750 + +0.2
194,758 - +0.4
194,758 - -0.5
194,758 - +0.7
194,758 - +1.0
194,760 + -0.9
194,812 + +0.7
194,886 + CSW01_14875 0.32 -0.3
194,959 + CSW01_14875 0.68 +1.0
195,024 + +1.5
195,048 - +0.0
195,186 - +0.4
195,434 + CSW01_14880 0.21 +0.2
195,444 + CSW01_14880 0.22 +1.8
195,444 + CSW01_14880 0.22 +0.0
195,444 + CSW01_14880 0.22 -1.4
195,444 + CSW01_14880 0.22 +0.5
195,452 - CSW01_14880 0.23 -0.7
195,452 - CSW01_14880 0.23 -0.0
195,452 - CSW01_14880 0.23 +1.5
195,452 - CSW01_14880 0.23 -0.9
195,452 - CSW01_14880 0.23 -0.9
195,452 - CSW01_14880 0.23 +1.0
195,452 - CSW01_14880 0.23 +1.1
195,452 - CSW01_14880 0.23 +0.8
195,452 - CSW01_14880 0.23 -0.4
195,452 - CSW01_14880 0.23 -2.4
195,456 + CSW01_14880 0.24 +0.7
195,502 + CSW01_14880 0.31 +2.1
195,502 + CSW01_14880 0.31 +2.0
195,533 - CSW01_14880 0.36 +1.1
195,560 + CSW01_14880 0.40 -0.1
195,593 + CSW01_14880 0.45 -0.1
195,594 - CSW01_14880 0.45 +2.0
195,594 - CSW01_14880 0.45 -1.7
195,594 - CSW01_14880 0.45 +0.4
195,601 - CSW01_14880 0.46 +0.7
195,745 + CSW01_14880 0.68 -0.9
195,745 + CSW01_14880 0.68 -0.4
195,745 + CSW01_14880 0.68 -1.8
195,745 + CSW01_14880 0.68 -2.0
195,745 + CSW01_14880 0.68 -2.1
195,745 + CSW01_14880 0.68 -0.4
195,745 + CSW01_14880 0.68 +0.4
195,745 + CSW01_14880 0.68 -2.4
195,745 + CSW01_14880 0.68 +0.2
195,745 + CSW01_14880 0.68 -0.1
195,745 + CSW01_14880 0.68 +0.7
195,745 + CSW01_14880 0.68 -0.4
195,745 + CSW01_14880 0.68 -0.1
195,745 + CSW01_14880 0.68 -0.2
195,745 + CSW01_14880 0.68 -0.7
195,745 + CSW01_14880 0.68 +0.7
195,745 + CSW01_14880 0.68 -2.5
195,751 + CSW01_14880 0.69 -1.8
195,753 - CSW01_14880 0.69 +0.0
195,753 - CSW01_14880 0.69 +0.2
195,753 - CSW01_14880 0.69 -0.4
195,753 - CSW01_14880 0.69 +0.9

Or see this region's nucleotide sequence