Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14610

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14600 and CSW01_14605 overlap by 31 nucleotidesCSW01_14605 and CSW01_14610 are separated by 9 nucleotidesCSW01_14610 and CSW01_14615 are separated by 15 nucleotides CSW01_14600: CSW01_14600 - AAA family ATPase, at 128,788 to 130,380 _14600 CSW01_14605: CSW01_14605 - type VI secretion system-associated protein TagO, at 130,350 to 131,033 _14605 CSW01_14610: CSW01_14610 - type VI secretion system protein TssA, at 131,043 to 132,452 _14610 CSW01_14615: CSW01_14615 - type VI secretion system membrane subunit TssM, at 132,468 to 136,013 _14615 Position (kb) 131 132 133Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 130.047 kb on - strand, within CSW01_14600at 130.074 kb on + strand, within CSW01_14600at 130.082 kb on - strand, within CSW01_14600at 130.082 kb on - strand, within CSW01_14600at 130.082 kb on - strand, within CSW01_14600at 130.083 kb on - strand, within CSW01_14600at 130.083 kb on - strand, within CSW01_14600at 130.108 kb on + strand, within CSW01_14600at 130.113 kb on + strand, within CSW01_14600at 130.113 kb on + strand, within CSW01_14600at 130.113 kb on + strand, within CSW01_14600at 130.116 kb on - strand, within CSW01_14600at 130.118 kb on + strand, within CSW01_14600at 130.281 kb on - strandat 130.342 kb on + strandat 130.350 kb on - strandat 130.365 kb on + strandat 130.433 kb on + strand, within CSW01_14605at 130.479 kb on + strand, within CSW01_14605at 130.503 kb on + strand, within CSW01_14605at 130.545 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.579 kb on - strand, within CSW01_14605at 130.579 kb on - strand, within CSW01_14605at 130.579 kb on - strand, within CSW01_14605at 130.598 kb on - strand, within CSW01_14605at 130.628 kb on + strand, within CSW01_14605at 130.628 kb on + strand, within CSW01_14605at 130.660 kb on + strand, within CSW01_14605at 130.668 kb on - strand, within CSW01_14605at 130.719 kb on - strand, within CSW01_14605at 131.179 kb on + strandat 131.179 kb on + strandat 131.187 kb on - strand, within CSW01_14610at 131.187 kb on - strand, within CSW01_14610at 131.199 kb on + strand, within CSW01_14610at 131.212 kb on + strand, within CSW01_14610at 131.220 kb on - strand, within CSW01_14610at 131.234 kb on + strand, within CSW01_14610at 131.242 kb on - strand, within CSW01_14610at 131.361 kb on - strand, within CSW01_14610at 131.496 kb on + strand, within CSW01_14610at 131.544 kb on - strand, within CSW01_14610at 131.551 kb on + strand, within CSW01_14610at 131.551 kb on + strand, within CSW01_14610at 131.552 kb on + strand, within CSW01_14610at 131.559 kb on - strand, within CSW01_14610at 131.561 kb on + strand, within CSW01_14610at 131.562 kb on - strand, within CSW01_14610at 131.587 kb on + strand, within CSW01_14610at 131.587 kb on - strand, within CSW01_14610at 131.592 kb on + strand, within CSW01_14610at 131.592 kb on + strand, within CSW01_14610at 131.595 kb on - strand, within CSW01_14610at 131.595 kb on - strand, within CSW01_14610at 131.613 kb on + strand, within CSW01_14610at 131.621 kb on - strand, within CSW01_14610at 131.631 kb on - strand, within CSW01_14610at 131.644 kb on - strand, within CSW01_14610at 131.654 kb on + strand, within CSW01_14610at 131.662 kb on - strand, within CSW01_14610at 131.669 kb on + strand, within CSW01_14610at 131.671 kb on + strand, within CSW01_14610at 131.679 kb on - strand, within CSW01_14610at 131.706 kb on + strand, within CSW01_14610at 131.772 kb on + strand, within CSW01_14610at 131.782 kb on + strand, within CSW01_14610at 131.795 kb on + strand, within CSW01_14610at 131.798 kb on - strand, within CSW01_14610at 131.798 kb on - strand, within CSW01_14610at 131.800 kb on + strand, within CSW01_14610at 131.808 kb on - strand, within CSW01_14610at 131.873 kb on + strand, within CSW01_14610at 131.881 kb on - strand, within CSW01_14610at 131.881 kb on - strand, within CSW01_14610at 131.930 kb on + strand, within CSW01_14610at 131.930 kb on + strand, within CSW01_14610at 131.930 kb on - strand, within CSW01_14610at 131.930 kb on - strand, within CSW01_14610at 131.938 kb on - strand, within CSW01_14610at 132.004 kb on - strand, within CSW01_14610at 132.130 kb on + strand, within CSW01_14610at 132.140 kb on + strand, within CSW01_14610at 132.143 kb on - strand, within CSW01_14610at 132.174 kb on + strand, within CSW01_14610at 132.255 kb on + strand, within CSW01_14610at 132.255 kb on + strand, within CSW01_14610at 132.273 kb on - strand, within CSW01_14610at 132.307 kb on + strand, within CSW01_14610at 132.330 kb on - strandat 132.356 kb on + strandat 132.356 kb on + strandat 132.364 kb on - strandat 132.364 kb on - strandat 132.364 kb on - strandat 132.364 kb on - strandat 132.364 kb on - strandat 132.515 kb on + strandat 132.597 kb on - strandat 132.597 kb on - strandat 132.628 kb on + strandat 132.629 kb on + strandat 132.667 kb on + strandat 132.675 kb on - strandat 132.760 kb on + strandat 132.781 kb on + strandat 132.808 kb on + strandat 132.920 kb on - strand, within CSW01_14615at 132.920 kb on - strand, within CSW01_14615at 133.018 kb on - strand, within CSW01_14615at 133.058 kb on + strand, within CSW01_14615at 133.200 kb on + strand, within CSW01_14615at 133.200 kb on - strand, within CSW01_14615at 133.201 kb on - strand, within CSW01_14615at 133.201 kb on - strand, within CSW01_14615at 133.201 kb on - strand, within CSW01_14615at 133.201 kb on - strand, within CSW01_14615at 133.219 kb on + strand, within CSW01_14615at 133.219 kb on + strand, within CSW01_14615at 133.270 kb on + strand, within CSW01_14615at 133.270 kb on + strand, within CSW01_14615at 133.278 kb on - strand, within CSW01_14615at 133.288 kb on - strand, within CSW01_14615at 133.288 kb on - strand, within CSW01_14615at 133.303 kb on + strand, within CSW01_14615at 133.311 kb on - strand, within CSW01_14615at 133.311 kb on - strand, within CSW01_14615at 133.336 kb on - strand, within CSW01_14615at 133.347 kb on + strand, within CSW01_14615

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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130,047 - CSW01_14600 0.79 -0.7
130,074 + CSW01_14600 0.81 -0.2
130,082 - CSW01_14600 0.81 -1.2
130,082 - CSW01_14600 0.81 -1.2
130,082 - CSW01_14600 0.81 -1.1
130,083 - CSW01_14600 0.81 -2.7
130,083 - CSW01_14600 0.81 -1.9
130,108 + CSW01_14600 0.83 +1.6
130,113 + CSW01_14600 0.83 -1.7
130,113 + CSW01_14600 0.83 +0.4
130,113 + CSW01_14600 0.83 -0.5
130,116 - CSW01_14600 0.83 +0.6
130,118 + CSW01_14600 0.83 -1.5
130,281 - +0.2
130,342 + -0.3
130,350 - -1.8
130,365 + -0.2
130,433 + CSW01_14605 0.12 +0.7
130,479 + CSW01_14605 0.19 +1.4
130,503 + CSW01_14605 0.22 +2.4
130,545 + CSW01_14605 0.29 -0.2
130,571 + CSW01_14605 0.32 -2.1
130,571 + CSW01_14605 0.32 -0.5
130,571 + CSW01_14605 0.32 +1.5
130,571 + CSW01_14605 0.32 +0.5
130,579 - CSW01_14605 0.33 +0.6
130,579 - CSW01_14605 0.33 +0.7
130,579 - CSW01_14605 0.33 +0.9
130,598 - CSW01_14605 0.36 +0.2
130,628 + CSW01_14605 0.41 +0.8
130,628 + CSW01_14605 0.41 -0.9
130,660 + CSW01_14605 0.45 -0.1
130,668 - CSW01_14605 0.46 -1.8
130,719 - CSW01_14605 0.54 +0.5
131,179 + -1.7
131,179 + +0.4
131,187 - CSW01_14610 0.10 -0.6
131,187 - CSW01_14610 0.10 +0.4
131,199 + CSW01_14610 0.11 -2.7
131,212 + CSW01_14610 0.12 -2.7
131,220 - CSW01_14610 0.13 +0.8
131,234 + CSW01_14610 0.14 -1.5
131,242 - CSW01_14610 0.14 -0.2
131,361 - CSW01_14610 0.23 -3.0
131,496 + CSW01_14610 0.32 +0.1
131,544 - CSW01_14610 0.36 -3.7
131,551 + CSW01_14610 0.36 -1.0
131,551 + CSW01_14610 0.36 +1.8
131,552 + CSW01_14610 0.36 +0.5
131,559 - CSW01_14610 0.37 +0.3
131,561 + CSW01_14610 0.37 -0.8
131,562 - CSW01_14610 0.37 -0.2
131,587 + CSW01_14610 0.39 +1.8
131,587 - CSW01_14610 0.39 +1.1
131,592 + CSW01_14610 0.39 -1.7
131,592 + CSW01_14610 0.39 +0.5
131,595 - CSW01_14610 0.39 +0.4
131,595 - CSW01_14610 0.39 +2.5
131,613 + CSW01_14610 0.40 +0.1
131,621 - CSW01_14610 0.41 -0.8
131,631 - CSW01_14610 0.42 +0.7
131,644 - CSW01_14610 0.43 -1.2
131,654 + CSW01_14610 0.43 +0.8
131,662 - CSW01_14610 0.44 -2.2
131,669 + CSW01_14610 0.44 +0.2
131,671 + CSW01_14610 0.45 +0.1
131,679 - CSW01_14610 0.45 +0.7
131,706 + CSW01_14610 0.47 +0.5
131,772 + CSW01_14610 0.52 -1.5
131,782 + CSW01_14610 0.52 -0.2
131,795 + CSW01_14610 0.53 -2.5
131,798 - CSW01_14610 0.54 +0.6
131,798 - CSW01_14610 0.54 +1.1
131,800 + CSW01_14610 0.54 +1.7
131,808 - CSW01_14610 0.54 +0.6
131,873 + CSW01_14610 0.59 +0.7
131,881 - CSW01_14610 0.59 +1.1
131,881 - CSW01_14610 0.59 +1.6
131,930 + CSW01_14610 0.63 +0.3
131,930 + CSW01_14610 0.63 +0.7
131,930 - CSW01_14610 0.63 -0.3
131,930 - CSW01_14610 0.63 +0.1
131,938 - CSW01_14610 0.63 +0.2
132,004 - CSW01_14610 0.68 +1.0
132,130 + CSW01_14610 0.77 -2.7
132,140 + CSW01_14610 0.78 +0.8
132,143 - CSW01_14610 0.78 -2.1
132,174 + CSW01_14610 0.80 +1.0
132,255 + CSW01_14610 0.86 +1.4
132,255 + CSW01_14610 0.86 +0.9
132,273 - CSW01_14610 0.87 +2.2
132,307 + CSW01_14610 0.90 +2.0
132,330 - -3.3
132,356 + -0.4
132,356 + +1.0
132,364 - +1.4
132,364 - -2.0
132,364 - +0.8
132,364 - -0.1
132,364 - -1.8
132,515 + +0.2
132,597 - -0.4
132,597 - -1.8
132,628 + +1.0
132,629 + +0.7
132,667 + +1.5
132,675 - +0.8
132,760 + +0.1
132,781 + +0.1
132,808 + -0.3
132,920 - CSW01_14615 0.13 -1.7
132,920 - CSW01_14615 0.13 +0.4
133,018 - CSW01_14615 0.16 -0.1
133,058 + CSW01_14615 0.17 -0.6
133,200 + CSW01_14615 0.21 +0.6
133,200 - CSW01_14615 0.21 -2.7
133,201 - CSW01_14615 0.21 +0.6
133,201 - CSW01_14615 0.21 +0.5
133,201 - CSW01_14615 0.21 -2.2
133,201 - CSW01_14615 0.21 +0.2
133,219 + CSW01_14615 0.21 +0.0
133,219 + CSW01_14615 0.21 +0.8
133,270 + CSW01_14615 0.23 -3.4
133,270 + CSW01_14615 0.23 +1.7
133,278 - CSW01_14615 0.23 -1.0
133,288 - CSW01_14615 0.23 +0.3
133,288 - CSW01_14615 0.23 +1.0
133,303 + CSW01_14615 0.24 +0.9
133,311 - CSW01_14615 0.24 -0.9
133,311 - CSW01_14615 0.24 +1.0
133,336 - CSW01_14615 0.24 +0.3
133,347 + CSW01_14615 0.25 -1.0

Or see this region's nucleotide sequence