Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14585

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14575 and CSW01_14580 are separated by 2 nucleotidesCSW01_14580 and CSW01_14585 are separated by 6 nucleotidesCSW01_14585 and CSW01_14590 are separated by 2 nucleotidesCSW01_14590 and CSW01_14595 are separated by 25 nucleotides CSW01_14575: CSW01_14575 - type VI secretion system-associated FHA domain protein TagH, at 122,067 to 123,554 _14575 CSW01_14580: CSW01_14580 - type VI secretion system lipoprotein TssJ, at 123,557 to 124,033 _14580 CSW01_14585: CSW01_14585 - type VI secretion system baseplate subunit TssK, at 124,040 to 125,374 _14585 CSW01_14590: CSW01_14590 - type IV secretion protein DotU, at 125,377 to 126,150 _14590 CSW01_14595: CSW01_14595 - type VI secretion system ATPase TssH, at 126,176 to 128,785 _14595 Position (kb) 124 125 126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 123.051 kb on + strand, within CSW01_14575at 123.064 kb on - strand, within CSW01_14575at 123.083 kb on + strand, within CSW01_14575at 123.129 kb on + strand, within CSW01_14575at 123.144 kb on + strand, within CSW01_14575at 123.172 kb on + strand, within CSW01_14575at 123.177 kb on + strand, within CSW01_14575at 123.185 kb on - strand, within CSW01_14575at 123.185 kb on - strand, within CSW01_14575at 123.207 kb on + strand, within CSW01_14575at 123.216 kb on + strand, within CSW01_14575at 123.228 kb on + strand, within CSW01_14575at 123.236 kb on + strand, within CSW01_14575at 123.274 kb on - strand, within CSW01_14575at 123.445 kb on + strandat 123.448 kb on + strandat 123.448 kb on + strandat 123.461 kb on - strandat 123.520 kb on - strandat 123.592 kb on - strandat 123.622 kb on + strand, within CSW01_14580at 123.630 kb on - strand, within CSW01_14580at 123.678 kb on + strand, within CSW01_14580at 123.691 kb on + strand, within CSW01_14580at 123.691 kb on + strand, within CSW01_14580at 123.772 kb on - strand, within CSW01_14580at 123.828 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.840 kb on + strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.848 kb on - strand, within CSW01_14580at 123.858 kb on - strand, within CSW01_14580at 123.921 kb on + strand, within CSW01_14580at 123.921 kb on + strand, within CSW01_14580at 123.929 kb on - strand, within CSW01_14580at 123.958 kb on + strand, within CSW01_14580at 123.966 kb on - strand, within CSW01_14580at 123.982 kb on - strand, within CSW01_14580at 124.031 kb on - strandat 124.113 kb on + strandat 124.113 kb on + strandat 124.118 kb on + strandat 124.123 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.128 kb on + strandat 124.131 kb on - strandat 124.136 kb on - strandat 124.136 kb on - strandat 124.136 kb on - strandat 124.136 kb on - strandat 124.149 kb on - strandat 124.383 kb on + strand, within CSW01_14585at 124.391 kb on - strand, within CSW01_14585at 124.401 kb on - strand, within CSW01_14585at 124.422 kb on + strand, within CSW01_14585at 124.422 kb on + strand, within CSW01_14585at 124.453 kb on + strand, within CSW01_14585at 124.453 kb on + strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.461 kb on - strand, within CSW01_14585at 124.514 kb on - strand, within CSW01_14585at 124.624 kb on - strand, within CSW01_14585at 124.626 kb on + strand, within CSW01_14585at 124.626 kb on + strand, within CSW01_14585at 124.631 kb on + strand, within CSW01_14585at 124.634 kb on - strand, within CSW01_14585at 124.634 kb on - strand, within CSW01_14585at 124.661 kb on + strand, within CSW01_14585at 124.661 kb on + strand, within CSW01_14585at 124.669 kb on - strand, within CSW01_14585at 124.702 kb on + strand, within CSW01_14585at 124.707 kb on + strand, within CSW01_14585at 124.715 kb on - strand, within CSW01_14585at 124.725 kb on - strand, within CSW01_14585at 124.733 kb on + strand, within CSW01_14585at 124.757 kb on + strand, within CSW01_14585at 124.765 kb on - strand, within CSW01_14585at 124.786 kb on + strand, within CSW01_14585at 124.796 kb on + strand, within CSW01_14585at 124.806 kb on + strand, within CSW01_14585at 124.833 kb on - strand, within CSW01_14585at 124.842 kb on - strand, within CSW01_14585at 124.995 kb on + strand, within CSW01_14585at 125.005 kb on + strand, within CSW01_14585at 125.005 kb on - strand, within CSW01_14585at 125.062 kb on - strand, within CSW01_14585at 125.064 kb on + strand, within CSW01_14585at 125.072 kb on - strand, within CSW01_14585at 125.116 kb on - strand, within CSW01_14585at 125.243 kb on + strandat 125.243 kb on + strandat 125.243 kb on + strandat 125.251 kb on - strandat 125.251 kb on - strandat 125.251 kb on - strandat 125.264 kb on + strandat 125.279 kb on + strandat 125.363 kb on + strandat 125.371 kb on - strandat 125.488 kb on - strand, within CSW01_14590at 125.534 kb on + strand, within CSW01_14590at 125.542 kb on - strand, within CSW01_14590at 125.544 kb on + strand, within CSW01_14590at 125.559 kb on + strand, within CSW01_14590at 125.566 kb on - strand, within CSW01_14590at 125.566 kb on - strand, within CSW01_14590at 125.566 kb on - strand, within CSW01_14590at 125.568 kb on + strand, within CSW01_14590at 125.576 kb on - strand, within CSW01_14590at 125.590 kb on - strand, within CSW01_14590at 125.600 kb on - strand, within CSW01_14590at 125.600 kb on - strand, within CSW01_14590at 125.817 kb on + strand, within CSW01_14590at 125.830 kb on + strand, within CSW01_14590at 125.830 kb on + strand, within CSW01_14590at 125.838 kb on - strand, within CSW01_14590at 125.857 kb on + strand, within CSW01_14590at 125.872 kb on + strand, within CSW01_14590at 125.880 kb on - strand, within CSW01_14590at 125.938 kb on + strand, within CSW01_14590at 125.948 kb on + strand, within CSW01_14590at 125.948 kb on + strand, within CSW01_14590at 125.956 kb on - strand, within CSW01_14590at 125.965 kb on + strand, within CSW01_14590at 125.971 kb on + strand, within CSW01_14590at 125.973 kb on - strand, within CSW01_14590at 125.979 kb on - strand, within CSW01_14590at 125.979 kb on - strand, within CSW01_14590at 125.990 kb on + strand, within CSW01_14590at 126.097 kb on + strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.100 kb on - strandat 126.145 kb on + strandat 126.181 kb on - strandat 126.188 kb on + strandat 126.258 kb on + strandat 126.274 kb on + strandat 126.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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123,051 + CSW01_14575 0.66 +1.1
123,064 - CSW01_14575 0.67 +0.5
123,083 + CSW01_14575 0.68 +0.8
123,129 + CSW01_14575 0.71 +0.5
123,144 + CSW01_14575 0.72 +0.0
123,172 + CSW01_14575 0.74 +2.3
123,177 + CSW01_14575 0.75 +0.1
123,185 - CSW01_14575 0.75 -1.0
123,185 - CSW01_14575 0.75 +0.7
123,207 + CSW01_14575 0.77 +0.3
123,216 + CSW01_14575 0.77 +0.0
123,228 + CSW01_14575 0.78 -1.4
123,236 + CSW01_14575 0.79 -0.4
123,274 - CSW01_14575 0.81 -0.5
123,445 + +1.1
123,448 + +0.8
123,448 + +0.9
123,461 - -1.5
123,520 - -1.4
123,592 - +1.5
123,622 + CSW01_14580 0.14 -1.5
123,630 - CSW01_14580 0.15 +0.4
123,678 + CSW01_14580 0.25 -0.3
123,691 + CSW01_14580 0.28 -2.9
123,691 + CSW01_14580 0.28 -2.7
123,772 - CSW01_14580 0.45 -0.8
123,828 + CSW01_14580 0.57 +0.0
123,840 + CSW01_14580 0.59 -2.3
123,840 + CSW01_14580 0.59 +0.9
123,840 + CSW01_14580 0.59 +1.0
123,840 + CSW01_14580 0.59 +0.1
123,840 + CSW01_14580 0.59 -0.8
123,840 + CSW01_14580 0.59 -1.7
123,848 - CSW01_14580 0.61 +1.6
123,848 - CSW01_14580 0.61 +0.3
123,848 - CSW01_14580 0.61 +0.2
123,848 - CSW01_14580 0.61 +0.1
123,848 - CSW01_14580 0.61 +0.4
123,858 - CSW01_14580 0.63 -1.4
123,921 + CSW01_14580 0.76 +1.4
123,921 + CSW01_14580 0.76 -0.3
123,929 - CSW01_14580 0.78 -0.5
123,958 + CSW01_14580 0.84 +2.3
123,966 - CSW01_14580 0.86 +0.2
123,982 - CSW01_14580 0.89 -1.3
124,031 - -1.2
124,113 + +0.6
124,113 + +1.2
124,118 + -0.0
124,123 + -2.0
124,128 + -2.7
124,128 + -1.8
124,128 + +0.2
124,128 + -2.3
124,128 + -4.4
124,128 + +0.9
124,131 - -2.5
124,136 - -2.5
124,136 - -0.1
124,136 - -3.7
124,136 - +2.7
124,149 - -0.3
124,383 + CSW01_14585 0.26 -2.4
124,391 - CSW01_14585 0.26 +1.0
124,401 - CSW01_14585 0.27 +0.3
124,422 + CSW01_14585 0.29 +0.5
124,422 + CSW01_14585 0.29 +0.1
124,453 + CSW01_14585 0.31 -2.7
124,453 + CSW01_14585 0.31 +0.7
124,461 - CSW01_14585 0.32 -0.8
124,461 - CSW01_14585 0.32 +0.3
124,461 - CSW01_14585 0.32 +1.0
124,461 - CSW01_14585 0.32 -1.6
124,514 - CSW01_14585 0.36 -1.4
124,624 - CSW01_14585 0.44 +0.5
124,626 + CSW01_14585 0.44 -0.4
124,626 + CSW01_14585 0.44 +1.1
124,631 + CSW01_14585 0.44 -1.9
124,634 - CSW01_14585 0.44 -4.0
124,634 - CSW01_14585 0.44 -0.6
124,661 + CSW01_14585 0.47 -0.1
124,661 + CSW01_14585 0.47 +2.2
124,669 - CSW01_14585 0.47 +0.6
124,702 + CSW01_14585 0.50 +0.9
124,707 + CSW01_14585 0.50 +1.9
124,715 - CSW01_14585 0.51 +0.9
124,725 - CSW01_14585 0.51 +1.1
124,733 + CSW01_14585 0.52 -2.7
124,757 + CSW01_14585 0.54 +0.2
124,765 - CSW01_14585 0.54 -0.5
124,786 + CSW01_14585 0.56 -2.7
124,796 + CSW01_14585 0.57 -1.2
124,806 + CSW01_14585 0.57 -0.4
124,833 - CSW01_14585 0.59 +0.5
124,842 - CSW01_14585 0.60 +1.4
124,995 + CSW01_14585 0.72 -0.6
125,005 + CSW01_14585 0.72 +1.7
125,005 - CSW01_14585 0.72 -1.2
125,062 - CSW01_14585 0.77 -0.4
125,064 + CSW01_14585 0.77 +0.2
125,072 - CSW01_14585 0.77 +0.9
125,116 - CSW01_14585 0.81 -0.9
125,243 + -0.1
125,243 + -0.7
125,243 + +1.8
125,251 - -2.3
125,251 - -0.0
125,251 - +0.6
125,264 + -1.0
125,279 + +0.4
125,363 + +1.0
125,371 - -0.4
125,488 - CSW01_14590 0.14 -0.9
125,534 + CSW01_14590 0.20 +0.8
125,542 - CSW01_14590 0.21 +0.2
125,544 + CSW01_14590 0.22 +2.6
125,559 + CSW01_14590 0.24 -2.7
125,566 - CSW01_14590 0.24 -1.9
125,566 - CSW01_14590 0.24 +0.7
125,566 - CSW01_14590 0.24 -1.2
125,568 + CSW01_14590 0.25 +0.4
125,576 - CSW01_14590 0.26 +0.2
125,590 - CSW01_14590 0.28 -0.5
125,600 - CSW01_14590 0.29 -0.4
125,600 - CSW01_14590 0.29 +0.3
125,817 + CSW01_14590 0.57 -0.8
125,830 + CSW01_14590 0.59 +0.2
125,830 + CSW01_14590 0.59 -1.8
125,838 - CSW01_14590 0.60 -0.7
125,857 + CSW01_14590 0.62 -0.2
125,872 + CSW01_14590 0.64 +0.7
125,880 - CSW01_14590 0.65 +1.0
125,938 + CSW01_14590 0.72 +0.3
125,948 + CSW01_14590 0.74 -2.3
125,948 + CSW01_14590 0.74 +1.2
125,956 - CSW01_14590 0.75 +1.5
125,965 + CSW01_14590 0.76 +1.1
125,971 + CSW01_14590 0.77 +1.3
125,973 - CSW01_14590 0.77 +0.2
125,979 - CSW01_14590 0.78 +0.3
125,979 - CSW01_14590 0.78 -0.7
125,990 + CSW01_14590 0.79 +0.4
126,097 + -2.4
126,100 - +0.9
126,100 - +0.7
126,100 - -0.9
126,145 + -1.2
126,181 - -0.4
126,188 + +0.0
126,258 + -2.3
126,274 + -1.6
126,324 + +0.3

Or see this region's nucleotide sequence