Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14485

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14480 and CSW01_14485 are separated by 268 nucleotidesCSW01_14485 and CSW01_14490 are separated by 42 nucleotides CSW01_14480: CSW01_14480 - transcriptional regulator, at 101,794 to 102,150 _14480 CSW01_14485: CSW01_14485 - hypothetical protein, at 102,419 to 103,117 _14485 CSW01_14490: CSW01_14490 - endo-1,4-beta-xylanase, at 103,160 to 104,383 _14490 Position (kb) 102 103 104Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 101.422 kb on - strandat 101.445 kb on - strandat 101.469 kb on + strandat 101.469 kb on - strandat 101.472 kb on - strandat 101.478 kb on - strandat 101.491 kb on - strandat 101.491 kb on - strandat 101.492 kb on - strandat 101.498 kb on + strandat 101.498 kb on + strandat 101.504 kb on + strandat 101.504 kb on + strandat 101.505 kb on - strandat 101.506 kb on - strandat 101.506 kb on - strandat 101.528 kb on - strandat 101.549 kb on + strandat 101.593 kb on - strandat 101.842 kb on + strand, within CSW01_14480at 101.842 kb on + strand, within CSW01_14480at 101.843 kb on + strand, within CSW01_14480at 101.843 kb on + strand, within CSW01_14480at 101.851 kb on - strand, within CSW01_14480at 101.851 kb on - strand, within CSW01_14480at 101.851 kb on - strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.896 kb on + strand, within CSW01_14480at 101.896 kb on + strand, within CSW01_14480at 101.906 kb on + strand, within CSW01_14480at 101.914 kb on - strand, within CSW01_14480at 101.920 kb on + strand, within CSW01_14480at 101.931 kb on + strand, within CSW01_14480at 101.940 kb on - strand, within CSW01_14480at 101.940 kb on - strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.991 kb on + strand, within CSW01_14480at 101.995 kb on - strand, within CSW01_14480at 101.995 kb on - strand, within CSW01_14480at 101.995 kb on - strand, within CSW01_14480at 102.006 kb on + strand, within CSW01_14480at 102.011 kb on + strand, within CSW01_14480at 102.014 kb on - strand, within CSW01_14480at 102.024 kb on + strand, within CSW01_14480at 102.028 kb on + strand, within CSW01_14480at 102.032 kb on - strand, within CSW01_14480at 102.036 kb on + strand, within CSW01_14480at 102.057 kb on + strand, within CSW01_14480at 102.062 kb on + strand, within CSW01_14480at 102.067 kb on + strand, within CSW01_14480at 102.086 kb on + strand, within CSW01_14480at 102.086 kb on + strand, within CSW01_14480at 102.086 kb on + strand, within CSW01_14480at 102.094 kb on - strand, within CSW01_14480at 102.175 kb on - strandat 102.207 kb on + strandat 102.215 kb on - strandat 102.225 kb on - strandat 102.352 kb on - strandat 102.395 kb on + strandat 102.485 kb on + strandat 102.493 kb on + strand, within CSW01_14485at 102.495 kb on + strand, within CSW01_14485at 102.495 kb on + strand, within CSW01_14485at 102.503 kb on - strand, within CSW01_14485at 102.519 kb on + strand, within CSW01_14485at 102.555 kb on - strand, within CSW01_14485at 102.558 kb on - strand, within CSW01_14485at 102.601 kb on - strand, within CSW01_14485at 102.614 kb on - strand, within CSW01_14485at 102.614 kb on - strand, within CSW01_14485at 102.649 kb on + strand, within CSW01_14485at 102.662 kb on + strand, within CSW01_14485at 102.677 kb on - strand, within CSW01_14485at 102.729 kb on - strand, within CSW01_14485at 102.819 kb on + strand, within CSW01_14485at 102.853 kb on + strand, within CSW01_14485at 102.902 kb on + strand, within CSW01_14485at 102.905 kb on - strand, within CSW01_14485at 103.052 kb on - strandat 103.062 kb on - strandat 103.110 kb on + strandat 103.110 kb on - strandat 103.112 kb on + strandat 103.120 kb on - strandat 103.120 kb on - strandat 103.125 kb on - strandat 103.183 kb on + strandat 103.192 kb on - strandat 103.199 kb on - strandat 103.244 kb on + strandat 103.252 kb on - strandat 103.252 kb on - strandat 103.252 kb on - strandat 103.271 kb on + strandat 103.272 kb on + strandat 103.280 kb on - strandat 103.298 kb on + strand, within CSW01_14490at 103.306 kb on + strand, within CSW01_14490at 103.316 kb on - strand, within CSW01_14490at 103.356 kb on - strand, within CSW01_14490at 103.435 kb on - strand, within CSW01_14490at 103.485 kb on - strand, within CSW01_14490at 103.538 kb on - strand, within CSW01_14490at 103.598 kb on - strand, within CSW01_14490at 103.598 kb on - strand, within CSW01_14490at 103.608 kb on - strand, within CSW01_14490at 103.671 kb on + strand, within CSW01_14490at 103.724 kb on + strand, within CSW01_14490at 103.737 kb on + strand, within CSW01_14490at 103.737 kb on + strand, within CSW01_14490at 103.756 kb on - strand, within CSW01_14490at 103.824 kb on + strand, within CSW01_14490at 103.883 kb on + strand, within CSW01_14490at 103.891 kb on + strand, within CSW01_14490at 103.891 kb on - strand, within CSW01_14490at 103.913 kb on + strand, within CSW01_14490at 103.932 kb on - strand, within CSW01_14490at 103.955 kb on + strand, within CSW01_14490at 103.963 kb on - strand, within CSW01_14490at 103.972 kb on + strand, within CSW01_14490at 103.972 kb on + strand, within CSW01_14490at 103.972 kb on + strand, within CSW01_14490at 103.973 kb on + strand, within CSW01_14490at 103.980 kb on - strand, within CSW01_14490at 103.980 kb on - strand, within CSW01_14490at 103.981 kb on - strand, within CSW01_14490at 103.990 kb on - strand, within CSW01_14490at 103.991 kb on - strand, within CSW01_14490at 104.115 kb on + strand, within CSW01_14490

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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101,422 - -4.0
101,445 - -0.9
101,469 + +0.4
101,469 - +0.0
101,472 - +0.5
101,478 - -2.7
101,491 - -0.3
101,491 - -0.5
101,492 - -0.1
101,498 + +0.0
101,498 + -2.4
101,504 + -0.9
101,504 + +1.0
101,505 - +0.9
101,506 - +0.9
101,506 - -1.1
101,528 - -0.9
101,549 + +0.2
101,593 - -1.6
101,842 + CSW01_14480 0.13 +0.5
101,842 + CSW01_14480 0.13 -3.5
101,843 + CSW01_14480 0.14 -2.2
101,843 + CSW01_14480 0.14 +0.9
101,851 - CSW01_14480 0.16 -2.5
101,851 - CSW01_14480 0.16 +1.2
101,851 - CSW01_14480 0.16 -3.1
101,882 + CSW01_14480 0.25 +0.9
101,882 + CSW01_14480 0.25 +0.4
101,882 + CSW01_14480 0.25 -0.9
101,882 + CSW01_14480 0.25 +0.4
101,882 + CSW01_14480 0.25 +0.3
101,882 + CSW01_14480 0.25 +1.4
101,890 - CSW01_14480 0.27 -1.2
101,890 - CSW01_14480 0.27 +1.3
101,890 - CSW01_14480 0.27 -3.5
101,890 - CSW01_14480 0.27 +0.6
101,890 - CSW01_14480 0.27 -0.7
101,890 - CSW01_14480 0.27 +0.4
101,890 - CSW01_14480 0.27 +1.3
101,890 - CSW01_14480 0.27 +2.0
101,890 - CSW01_14480 0.27 +3.7
101,896 + CSW01_14480 0.29 +1.6
101,896 + CSW01_14480 0.29 +1.2
101,906 + CSW01_14480 0.31 -2.5
101,914 - CSW01_14480 0.34 +0.3
101,920 + CSW01_14480 0.35 +0.2
101,931 + CSW01_14480 0.38 -0.7
101,940 - CSW01_14480 0.41 +0.6
101,940 - CSW01_14480 0.41 -0.5
101,978 + CSW01_14480 0.52 +0.0
101,978 + CSW01_14480 0.52 +1.2
101,978 + CSW01_14480 0.52 -1.4
101,978 + CSW01_14480 0.52 +1.1
101,978 + CSW01_14480 0.52 +0.2
101,978 + CSW01_14480 0.52 +0.1
101,986 - CSW01_14480 0.54 +0.9
101,986 - CSW01_14480 0.54 +0.6
101,986 - CSW01_14480 0.54 -1.4
101,986 - CSW01_14480 0.54 +1.4
101,991 + CSW01_14480 0.55 -1.9
101,995 - CSW01_14480 0.56 -3.5
101,995 - CSW01_14480 0.56 -1.7
101,995 - CSW01_14480 0.56 +1.1
102,006 + CSW01_14480 0.59 +0.2
102,011 + CSW01_14480 0.61 +0.0
102,014 - CSW01_14480 0.62 +0.4
102,024 + CSW01_14480 0.64 -1.9
102,028 + CSW01_14480 0.66 +0.8
102,032 - CSW01_14480 0.67 +1.3
102,036 + CSW01_14480 0.68 -0.2
102,057 + CSW01_14480 0.74 -0.0
102,062 + CSW01_14480 0.75 -0.3
102,067 + CSW01_14480 0.76 +0.9
102,086 + CSW01_14480 0.82 +0.8
102,086 + CSW01_14480 0.82 +1.2
102,086 + CSW01_14480 0.82 +1.7
102,094 - CSW01_14480 0.84 +0.2
102,175 - +0.4
102,207 + +0.3
102,215 - -0.8
102,225 - +1.1
102,352 - -0.7
102,395 + -0.7
102,485 + -0.6
102,493 + CSW01_14485 0.11 -1.4
102,495 + CSW01_14485 0.11 -2.4
102,495 + CSW01_14485 0.11 +0.7
102,503 - CSW01_14485 0.12 +0.4
102,519 + CSW01_14485 0.14 +0.7
102,555 - CSW01_14485 0.19 -0.4
102,558 - CSW01_14485 0.20 +0.2
102,601 - CSW01_14485 0.26 +1.8
102,614 - CSW01_14485 0.28 +0.2
102,614 - CSW01_14485 0.28 -1.4
102,649 + CSW01_14485 0.33 -0.4
102,662 + CSW01_14485 0.35 -1.5
102,677 - CSW01_14485 0.37 -0.2
102,729 - CSW01_14485 0.44 -1.9
102,819 + CSW01_14485 0.57 -0.9
102,853 + CSW01_14485 0.62 +0.6
102,902 + CSW01_14485 0.69 -3.3
102,905 - CSW01_14485 0.70 +1.4
103,052 - +2.2
103,062 - +0.6
103,110 + -0.2
103,110 - +0.7
103,112 + -3.3
103,120 - -1.1
103,120 - -1.0
103,125 - +1.0
103,183 + +0.6
103,192 - +0.6
103,199 - +2.0
103,244 + +1.0
103,252 - -2.1
103,252 - -1.3
103,252 - -0.5
103,271 + -0.1
103,272 + +1.1
103,280 - -1.2
103,298 + CSW01_14490 0.11 -2.5
103,306 + CSW01_14490 0.12 +1.1
103,316 - CSW01_14490 0.13 -0.4
103,356 - CSW01_14490 0.16 -2.8
103,435 - CSW01_14490 0.22 -2.3
103,485 - CSW01_14490 0.27 -0.0
103,538 - CSW01_14490 0.31 +0.9
103,598 - CSW01_14490 0.36 +0.8
103,598 - CSW01_14490 0.36 +0.8
103,608 - CSW01_14490 0.37 -0.3
103,671 + CSW01_14490 0.42 +1.2
103,724 + CSW01_14490 0.46 -0.1
103,737 + CSW01_14490 0.47 -1.0
103,737 + CSW01_14490 0.47 +1.1
103,756 - CSW01_14490 0.49 +0.6
103,824 + CSW01_14490 0.54 -0.1
103,883 + CSW01_14490 0.59 +2.5
103,891 + CSW01_14490 0.60 +0.7
103,891 - CSW01_14490 0.60 +0.9
103,913 + CSW01_14490 0.62 -2.0
103,932 - CSW01_14490 0.63 +1.0
103,955 + CSW01_14490 0.65 -2.9
103,963 - CSW01_14490 0.66 +0.3
103,972 + CSW01_14490 0.66 -2.1
103,972 + CSW01_14490 0.66 -0.3
103,972 + CSW01_14490 0.66 -0.8
103,973 + CSW01_14490 0.66 -1.6
103,980 - CSW01_14490 0.67 +0.2
103,980 - CSW01_14490 0.67 +1.1
103,981 - CSW01_14490 0.67 -0.4
103,990 - CSW01_14490 0.68 +0.2
103,991 - CSW01_14490 0.68 +0.9
104,115 + CSW01_14490 0.78 -0.7

Or see this region's nucleotide sequence