Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14255

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14250 and CSW01_14255 are separated by 538 nucleotidesCSW01_14255 and CSW01_14260 are separated by 78 nucleotidesCSW01_14260 and CSW01_14265 are separated by 131 nucleotides CSW01_14250: CSW01_14250 - DUF368 domain-containing protein, at 47,302 to 48,228 _14250 CSW01_14255: CSW01_14255 - sodium/glutamate symporter, at 48,767 to 49,993 _14255 CSW01_14260: CSW01_14260 - cation tolerance protein CutA, at 50,072 to 50,830 _14260 CSW01_14265: CSW01_14265 - N-acetyltransferase, at 50,962 to 51,246 _14265 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 47.874 kb on + strand, within CSW01_14250at 48.067 kb on + strand, within CSW01_14250at 48.301 kb on + strandat 48.509 kb on + strandat 48.694 kb on + strandat 48.694 kb on + strandat 48.702 kb on - strandat 48.721 kb on - strandat 48.799 kb on - strandat 48.934 kb on - strand, within CSW01_14255at 49.018 kb on + strand, within CSW01_14255at 49.033 kb on + strand, within CSW01_14255at 49.041 kb on - strand, within CSW01_14255at 49.099 kb on - strand, within CSW01_14255at 49.124 kb on + strand, within CSW01_14255at 49.132 kb on - strand, within CSW01_14255at 49.164 kb on + strand, within CSW01_14255at 49.172 kb on - strand, within CSW01_14255at 49.172 kb on - strand, within CSW01_14255at 49.174 kb on + strand, within CSW01_14255at 49.194 kb on - strand, within CSW01_14255at 49.277 kb on - strand, within CSW01_14255at 49.370 kb on - strand, within CSW01_14255at 49.597 kb on + strand, within CSW01_14255at 49.597 kb on + strand, within CSW01_14255at 49.672 kb on - strand, within CSW01_14255at 49.672 kb on - strand, within CSW01_14255at 49.672 kb on - strand, within CSW01_14255at 49.674 kb on + strand, within CSW01_14255at 49.770 kb on + strand, within CSW01_14255at 49.778 kb on - strand, within CSW01_14255at 49.815 kb on - strand, within CSW01_14255at 49.847 kb on - strand, within CSW01_14255at 49.853 kb on + strand, within CSW01_14255at 50.101 kb on + strandat 50.109 kb on - strandat 50.245 kb on - strand, within CSW01_14260at 50.249 kb on + strand, within CSW01_14260at 50.481 kb on - strand, within CSW01_14260at 50.524 kb on + strand, within CSW01_14260at 50.712 kb on + strand, within CSW01_14260at 50.724 kb on + strand, within CSW01_14260at 50.725 kb on - strand, within CSW01_14260at 50.725 kb on - strand, within CSW01_14260at 50.732 kb on - strand, within CSW01_14260at 50.732 kb on - strand, within CSW01_14260at 50.732 kb on - strand, within CSW01_14260at 50.734 kb on + strand, within CSW01_14260at 50.864 kb on + strandat 50.964 kb on + strandat 50.964 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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47,874 + CSW01_14250 0.62 +1.8
48,067 + CSW01_14250 0.83 +0.8
48,301 + -0.0
48,509 + +0.8
48,694 + +2.4
48,694 + +0.7
48,702 - +1.0
48,721 - -2.0
48,799 - +0.9
48,934 - CSW01_14255 0.14 -1.4
49,018 + CSW01_14255 0.20 -2.6
49,033 + CSW01_14255 0.22 -1.4
49,041 - CSW01_14255 0.22 +0.6
49,099 - CSW01_14255 0.27 -1.2
49,124 + CSW01_14255 0.29 -0.1
49,132 - CSW01_14255 0.30 -0.6
49,164 + CSW01_14255 0.32 -1.2
49,172 - CSW01_14255 0.33 -2.3
49,172 - CSW01_14255 0.33 +0.6
49,174 + CSW01_14255 0.33 -2.2
49,194 - CSW01_14255 0.35 -1.1
49,277 - CSW01_14255 0.42 +0.3
49,370 - CSW01_14255 0.49 +0.8
49,597 + CSW01_14255 0.68 -0.6
49,597 + CSW01_14255 0.68 -0.4
49,672 - CSW01_14255 0.74 -1.4
49,672 - CSW01_14255 0.74 -0.2
49,672 - CSW01_14255 0.74 -0.1
49,674 + CSW01_14255 0.74 -2.5
49,770 + CSW01_14255 0.82 +0.2
49,778 - CSW01_14255 0.82 +0.4
49,815 - CSW01_14255 0.85 -2.2
49,847 - CSW01_14255 0.88 +0.1
49,853 + CSW01_14255 0.89 -0.0
50,101 + +1.0
50,109 - +0.5
50,245 - CSW01_14260 0.23 -0.1
50,249 + CSW01_14260 0.23 +0.6
50,481 - CSW01_14260 0.54 +0.1
50,524 + CSW01_14260 0.60 +0.6
50,712 + CSW01_14260 0.84 -0.6
50,724 + CSW01_14260 0.86 -0.4
50,725 - CSW01_14260 0.86 +0.3
50,725 - CSW01_14260 0.86 -1.0
50,732 - CSW01_14260 0.87 -0.8
50,732 - CSW01_14260 0.87 -0.6
50,732 - CSW01_14260 0.87 -0.6
50,734 + CSW01_14260 0.87 -0.8
50,864 + -2.0
50,964 + -1.2
50,964 + +1.0

Or see this region's nucleotide sequence