Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13715

Experiment: ICP3_phage_0.41_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_0.41_MOI_rep1
2,923,524	+		CSW01_13705	0.89	-0.9
2,923,543	+		CSW01_13705	0.90	+0.2
2,923,543	+		CSW01_13705	0.90	+1.0
2,923,543	+		CSW01_13705	0.90	-2.1
2,923,543	+		CSW01_13705	0.90	-1.5
2,923,543	+		CSW01_13705	0.90	-2.2
2,923,544	+		CSW01_13705	0.90	+1.9
2,923,551	-				+1.0
2,923,551	-				+0.8
2,923,551	-				-3.1
2,923,551	-				+0.7
2,923,551	-				-1.2
2,923,556	-				+1.1
2,923,594	+				+0.6
2,923,618	-				-2.3
2,923,620	+				-3.4
2,923,657	+				+1.4
2,923,665	-				+1.6
2,923,665	-				-1.0
2,923,665	-				+0.4
2,923,667	+				+1.2
2,923,667	+				+3.1
2,923,670	-				-2.7
2,923,679	+				-0.5
2,923,679	+				-2.7
2,923,679	+				+1.3
2,923,679	+				-2.5
2,923,679	+				+1.0
2,923,679	+				-0.4
2,923,679	+				-0.2
2,923,687	-				-0.6
2,923,687	-				-0.2
2,923,687	-				+0.3
2,923,687	-				+0.4
2,923,687	-				+0.6
2,923,712	+				-0.5
2,923,719	+				+1.1
2,923,727	-				+1.3
2,923,732	-				-0.3
2,923,737	-				-3.5
2,923,744	-				-2.6
2,923,744	-				+1.1
2,923,760	+				+0.4
2,923,812	+				-0.3
2,923,813	-				-1.6
2,923,820	-				+1.8
2,923,820	-				+1.8
2,923,820	-				-2.6
2,923,849	-				+0.9
2,923,864	+				+0.5
2,923,864	+				+0.5
2,923,900	-				+0.9
2,923,903	+				+0.1
2,923,943	+		CSW01_13710	0.14	-1.2
2,923,992	+		CSW01_13710	0.23	-2.2
2,923,992	+		CSW01_13710	0.23	+0.1
2,924,000	-		CSW01_13710	0.25	-3.7
2,924,024	-		CSW01_13710	0.30	+2.0
2,924,025	-		CSW01_13710	0.30	-0.1
2,924,025	-		CSW01_13710	0.30	-1.9
2,924,028	+		CSW01_13710	0.31	-4.2
2,924,031	-		CSW01_13710	0.31	+1.2
2,924,031	-		CSW01_13710	0.31	-1.2
2,924,031	-		CSW01_13710	0.31	+0.7
2,924,033	+		CSW01_13710	0.32	+0.4
2,924,036	-		CSW01_13710	0.32	-0.0
2,924,041	-		CSW01_13710	0.33	-2.4
2,924,041	-		CSW01_13710	0.33	-0.6
2,924,063	+		CSW01_13710	0.38	-3.9
2,924,094	-		CSW01_13710	0.44	-0.7
2,924,102	+		CSW01_13710	0.46	-1.9
2,924,109	+		CSW01_13710	0.47	+0.2
2,924,140	+		CSW01_13710	0.53	-2.2
2,924,228	+		CSW01_13710	0.71	+0.0
2,924,228	+		CSW01_13710	0.71	+0.2
2,924,236	-		CSW01_13710	0.72	+1.2
2,924,236	-		CSW01_13710	0.72	+0.6
2,924,236	-		CSW01_13710	0.72	-0.4
2,924,236	-		CSW01_13710	0.72	-1.1
2,924,236	-		CSW01_13710	0.72	+0.6
2,924,236	-		CSW01_13710	0.72	+0.5
2,924,297	+		CSW01_13710	0.85	-0.5
2,924,337	+				-0.5
2,924,341	+				-2.4
2,924,345	-				-3.5
2,924,347	+				+1.3
2,924,347	+				-0.1
2,924,347	+				-0.9
2,924,347	+				+0.2
2,924,347	+				+0.3
2,924,362	+				-2.6
2,924,385	+				-1.4
2,924,460	-				-1.5
2,924,485	+				+1.8
2,924,485	+				-2.4
2,924,493	-				-2.2
2,924,530	-				+0.6
2,924,645	+		CSW01_13715	0.17	-0.4
2,924,653	-		CSW01_13715	0.18	-1.3
2,924,672	-		CSW01_13715	0.20	-0.5
2,924,718	+		CSW01_13715	0.26	+0.8
2,924,732	+		CSW01_13715	0.28	-3.2
2,924,769	+		CSW01_13715	0.32	+2.1
2,924,782	-		CSW01_13715	0.34	+3.4
2,924,788	+		CSW01_13715	0.35	-0.3
2,924,796	-		CSW01_13715	0.36	-0.2
2,924,797	-		CSW01_13715	0.36	+1.1
2,924,815	+		CSW01_13715	0.38	-1.4
2,924,820	+		CSW01_13715	0.39	-3.8
2,924,823	-		CSW01_13715	0.39	+0.1
2,924,823	-		CSW01_13715	0.39	+1.0
2,924,823	-		CSW01_13715	0.39	+0.7
2,924,823	-		CSW01_13715	0.39	+0.2
2,924,825	+		CSW01_13715	0.39	-0.1
2,924,825	+		CSW01_13715	0.39	-0.2
2,924,859	-		CSW01_13715	0.44	-1.7
2,924,871	-		CSW01_13715	0.45	-3.1
2,924,871	-		CSW01_13715	0.45	+0.5
2,924,900	+		CSW01_13715	0.49	-0.0
2,924,938	-		CSW01_13715	0.53	+0.2
2,924,938	-		CSW01_13715	0.53	-0.7
2,924,974	+		CSW01_13715	0.58	-2.7
2,924,988	+		CSW01_13715	0.60	-1.4
2,925,056	-		CSW01_13715	0.68	-0.7
2,925,058	+		CSW01_13715	0.68	+0.7
2,925,063	+		CSW01_13715	0.69	-2.0
2,925,069	+		CSW01_13715	0.70	-1.1
2,925,082	-		CSW01_13715	0.71	+0.7
2,925,082	-		CSW01_13715	0.71	+0.9
2,925,088	+		CSW01_13715	0.72	+1.1
2,925,088	+		CSW01_13715	0.72	+1.8
2,925,096	-		CSW01_13715	0.73	-3.0
2,925,096	-		CSW01_13715	0.73	+0.7
2,925,143	-		CSW01_13715	0.79	-2.4
2,925,145	-		CSW01_13715	0.79	+1.4
2,925,165	+		CSW01_13715	0.82	+0.5
2,925,173	-		CSW01_13715	0.83	+1.4
2,925,207	+				-1.2
2,925,229	+				-0.4
2,925,230	+				+1.0
2,925,248	-				-1.2
2,925,262	+				-1.9
2,925,265	-				-0.2
2,925,296	-				+0.5
2,925,354	+		CSW01_13720	0.17	-3.3
2,925,362	-		CSW01_13720	0.18	-4.2
2,925,477	+		CSW01_13720	0.32	-2.3
2,925,477	+		CSW01_13720	0.32	+0.6
2,925,491	-		CSW01_13720	0.33	-2.7
2,925,531	-		CSW01_13720	0.38	-3.6
2,925,542	+		CSW01_13720	0.39	+0.9
2,925,542	+		CSW01_13720	0.39	-1.9
2,925,544	+		CSW01_13720	0.39	+0.7
2,925,544	+		CSW01_13720	0.39	+1.4
2,925,550	-		CSW01_13720	0.40	-1.9
2,925,550	-		CSW01_13720	0.40	-2.3
2,925,550	-		CSW01_13720	0.40	-2.6
2,925,552	-		CSW01_13720	0.40	-0.5
2,925,570	+		CSW01_13720	0.43	-4.2
2,925,573	-		CSW01_13720	0.43	-0.3
2,925,578	-		CSW01_13720	0.43	-0.9
2,925,595	+		CSW01_13720	0.45	+2.4
2,925,617	+		CSW01_13720	0.48	-2.2
2,925,661	+		CSW01_13720	0.53	+0.3
2,925,686	-		CSW01_13720	0.56	+0.4
2,925,712	-		CSW01_13720	0.59	-0.2
2,925,756	-		CSW01_13720	0.64	+0.7
2,925,809	-		CSW01_13720	0.70	-1.9
2,925,818	-		CSW01_13720	0.71	-0.1
2,925,835	-		CSW01_13720	0.73	-2.1
2,925,857	+		CSW01_13720	0.76	-2.7
2,925,860	-		CSW01_13720	0.76	+2.6
2,925,860	-		CSW01_13720	0.76	+0.4
2,925,865	-		CSW01_13720	0.77	+0.9
2,925,874	+		CSW01_13720	0.78	-1.6
2,926,010	-				+1.0
2,926,017	-				+0.8
2,926,090	-				-3.1
2,926,107	+				+0.5
2,926,107	+				-3.6
2,926,142	+				-1.4