Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13215

Experiment: ICP3_phage_0.41_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_0.41_MOI_rep1
2,810,145	+		CSW01_13205	0.73	+0.0
2,810,145	+		CSW01_13205	0.73	-0.5
2,810,154	-		CSW01_13205	0.74	+3.2
2,810,183	+		CSW01_13205	0.75	+0.4
2,810,184	+		CSW01_13205	0.75	-1.0
2,810,264	+		CSW01_13205	0.79	+0.4
2,810,264	+		CSW01_13205	0.79	+1.6
2,810,272	-		CSW01_13205	0.80	+0.7
2,810,272	-		CSW01_13205	0.80	-0.8
2,810,339	+		CSW01_13205	0.83	+0.5
2,810,347	-		CSW01_13205	0.84	+1.1
2,810,363	+		CSW01_13205	0.84	+0.9
2,810,476	-				+0.5
2,810,519	+				-0.4
2,810,526	+				-0.2
2,810,531	+				-4.0
2,810,531	+				+1.1
2,810,560	-				+0.1
2,810,626	+				+0.3
2,810,634	-				-4.2
2,810,723	+		CSW01_13210	0.13	+0.3
2,810,723	+		CSW01_13210	0.13	-2.4
2,810,723	+		CSW01_13210	0.13	+1.1
2,810,723	+		CSW01_13210	0.13	+0.4
2,810,723	+		CSW01_13210	0.13	-1.8
2,810,723	+		CSW01_13210	0.13	+1.6
2,810,723	+		CSW01_13210	0.13	+0.7
2,810,731	-		CSW01_13210	0.14	+1.1
2,810,731	-		CSW01_13210	0.14	+1.1
2,810,731	-		CSW01_13210	0.14	+0.8
2,810,731	-		CSW01_13210	0.14	-2.2
2,810,731	-		CSW01_13210	0.14	-1.2
2,810,731	-		CSW01_13210	0.14	-1.7
2,810,731	-		CSW01_13210	0.14	-0.5
2,810,731	-		CSW01_13210	0.14	+1.3
2,810,859	+		CSW01_13210	0.41	+0.6
2,810,958	+		CSW01_13210	0.61	-4.0
2,810,958	+		CSW01_13210	0.61	-1.0
2,810,958	+		CSW01_13210	0.61	+2.3
2,810,966	-		CSW01_13210	0.63	+1.7
2,810,966	-		CSW01_13210	0.63	+0.1
2,810,966	-		CSW01_13210	0.63	+1.8
2,810,966	-		CSW01_13210	0.63	+0.3
2,811,021	-		CSW01_13210	0.74	-0.3
2,811,052	-		CSW01_13210	0.80	+1.5
2,811,058	+		CSW01_13210	0.82	+0.5
2,811,058	+		CSW01_13210	0.82	+0.4
2,811,058	+		CSW01_13210	0.82	+1.1
2,811,058	+		CSW01_13210	0.82	-0.3
2,811,058	+		CSW01_13210	0.82	+1.1
2,811,066	-		CSW01_13210	0.83	+0.8
2,811,090	-		CSW01_13210	0.88	-0.2
2,811,119	-				-0.4
2,811,226	+				-1.4
2,811,226	+				-3.4
2,811,226	+				+0.8
2,811,226	+				+1.2
2,811,231	+				+1.0
2,811,248	-		CSW01_13215	0.11	+0.5
2,811,250	+		CSW01_13215	0.11	-0.3
2,811,250	+		CSW01_13215	0.11	+3.2
2,811,250	+		CSW01_13215	0.11	-3.8
2,811,254	-		CSW01_13215	0.11	+0.2
2,811,288	-		CSW01_13215	0.15	-1.9
2,811,303	+		CSW01_13215	0.16	+0.4
2,811,316	+		CSW01_13215	0.17	-2.2
2,811,316	+		CSW01_13215	0.17	+0.7
2,811,316	+		CSW01_13215	0.17	-0.8
2,811,316	+		CSW01_13215	0.17	+1.0
2,811,316	+		CSW01_13215	0.17	-0.7
2,811,324	-		CSW01_13215	0.18	-0.2
2,811,324	-		CSW01_13215	0.18	+0.3
2,811,345	+		CSW01_13215	0.20	+0.0
2,811,393	+		CSW01_13215	0.25	+0.9
2,811,393	+		CSW01_13215	0.25	-3.3
2,811,393	+		CSW01_13215	0.25	+2.6
2,811,393	+		CSW01_13215	0.25	-1.1
2,811,407	+		CSW01_13215	0.27	+0.9
2,811,415	-		CSW01_13215	0.27	-3.3
2,811,506	+		CSW01_13215	0.37	+0.2
2,811,560	+		CSW01_13215	0.42	-2.3
2,811,566	-		CSW01_13215	0.43	-1.9
2,811,601	+		CSW01_13215	0.46	-3.3
2,811,601	+		CSW01_13215	0.46	-1.2
2,811,601	+		CSW01_13215	0.46	+1.3
2,811,601	+		CSW01_13215	0.46	-0.3
2,811,601	+		CSW01_13215	0.46	-1.9
2,811,609	-		CSW01_13215	0.47	+0.5
2,811,609	-		CSW01_13215	0.47	-0.6
2,811,609	-		CSW01_13215	0.47	+0.9
2,811,615	-		CSW01_13215	0.48	-0.7
2,811,674	-		CSW01_13215	0.54	+0.8
2,811,674	-		CSW01_13215	0.54	+1.2
2,811,674	-		CSW01_13215	0.54	+1.1
2,811,674	-		CSW01_13215	0.54	-0.7
2,811,675	+		CSW01_13215	0.54	+3.3
2,811,698	+		CSW01_13215	0.56	+0.4
2,811,723	-		CSW01_13215	0.59	+0.6
2,811,780	+		CSW01_13215	0.64	+0.7
2,811,780	+		CSW01_13215	0.64	-1.9
2,811,780	+		CSW01_13215	0.64	-1.0
2,811,788	-		CSW01_13215	0.65	+1.6
2,811,788	-		CSW01_13215	0.65	-3.0
2,811,788	-		CSW01_13215	0.65	-0.3
2,811,788	-		CSW01_13215	0.65	+1.1
2,811,788	-		CSW01_13215	0.65	-3.6
2,811,788	-		CSW01_13215	0.65	+0.9
2,811,788	-		CSW01_13215	0.65	+1.4
2,811,788	-		CSW01_13215	0.65	+0.2
2,811,790	+		CSW01_13215	0.65	-0.6
2,811,902	+		CSW01_13215	0.77	+0.8
2,812,033	-		CSW01_13215	0.90	+0.1
2,812,044	+				-1.2
2,812,073	+				+1.5
2,812,073	+				-0.7
2,812,078	+				-2.3
2,812,079	+				+0.1
2,812,081	-				+0.5
2,812,081	-				-0.9
2,812,090	+				+1.3
2,812,098	-				-1.3
2,812,098	-				-3.2
2,812,151	-				-0.2
2,812,161	-				+1.5
2,812,164	+				+1.8
2,812,173	+				-2.3
2,812,192	-				-4.7
2,812,323	-		CSW01_13220	0.30	+1.7
2,812,333	+		CSW01_13220	0.35	-3.6
2,812,390	-		CSW01_13220	0.62	-1.7
2,812,390	-		CSW01_13220	0.62	-4.2
2,812,520	+				-1.0
2,812,526	-				-0.4
2,812,528	-				+0.7
2,812,552	+				+0.2
2,812,586	-				-0.7
2,812,627	+				+0.4
2,812,627	+				+1.2
2,812,635	-				+0.2
2,812,635	-				-2.7
2,812,635	-				-3.3
2,812,644	-				+0.7
2,812,669	+		CSW01_13225	0.12	+2.6
2,812,677	-		CSW01_13225	0.13	+0.2
2,812,678	+		CSW01_13225	0.13	-2.5
2,812,696	-		CSW01_13225	0.15	+1.4
2,812,748	-		CSW01_13225	0.21	+0.2
2,812,863	-		CSW01_13225	0.34	-2.8
2,812,864	+		CSW01_13225	0.34	+1.1
2,812,872	-		CSW01_13225	0.35	-0.8
2,812,898	-		CSW01_13225	0.38	-2.2
2,812,904	+		CSW01_13225	0.39	+0.9
2,812,956	+		CSW01_13225	0.45	+1.4
2,812,956	+		CSW01_13225	0.45	-0.2
2,812,964	-		CSW01_13225	0.46	+0.9
2,812,973	+		CSW01_13225	0.47	-0.9
2,812,990	+		CSW01_13225	0.49	+1.2
2,812,992	-		CSW01_13225	0.49	-3.2
2,812,998	-		CSW01_13225	0.50	-0.5
2,813,020	+		CSW01_13225	0.52	-2.7
2,813,040	-		CSW01_13225	0.54	-1.8