Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12900

Experiment: ICP3_phage_0.41_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_0.41_MOI_rep1
2,758,088	+				+1.9
2,758,096	-				+0.8
2,758,163	-		CSW01_12895	0.21	+0.1
2,758,170	+		CSW01_12895	0.23	-3.2
2,758,170	+		CSW01_12895	0.23	-2.6
2,758,178	-		CSW01_12895	0.25	+0.4
2,758,260	+		CSW01_12895	0.49	+0.2
2,758,260	+		CSW01_12895	0.49	-4.6
2,758,260	+		CSW01_12895	0.49	+0.5
2,758,321	+		CSW01_12895	0.66	-1.5
2,758,394	+		CSW01_12895	0.87	+0.1
2,758,430	+				-3.2
2,758,440	+				+0.9
2,758,448	-				-2.8
2,758,448	-				+1.3
2,758,475	+				-2.9
2,758,601	+				-2.9
2,758,609	-				-0.4
2,758,622	+				-0.4
2,758,630	-				+0.0
2,758,678	-				+0.2
2,758,680	-				+0.9
2,758,700	+				+1.9
2,758,700	+				-0.1
2,758,704	+				+3.2
2,758,708	-				+1.2
2,758,708	-				-0.3
2,758,720	-				+0.3
2,758,720	-				+0.1
2,758,720	-				+0.5
2,758,720	-				+0.7
2,758,755	-				+0.9
2,758,755	-				-3.0
2,758,797	-				-3.2
2,758,797	-				+0.0
2,758,797	-				+0.5
2,758,841	-		CSW01_12900	0.10	-3.1
2,758,850	+		CSW01_12900	0.11	-1.9
2,758,861	+		CSW01_12900	0.11	+0.8
2,758,988	-		CSW01_12900	0.14	-1.0
2,759,004	+		CSW01_12900	0.15	-0.6
2,759,004	+		CSW01_12900	0.15	-0.8
2,759,004	+		CSW01_12900	0.15	-1.3
2,759,004	+		CSW01_12900	0.15	-2.0
2,759,004	+		CSW01_12900	0.15	-2.7
2,759,004	+		CSW01_12900	0.15	+0.3
2,759,012	-		CSW01_12900	0.15	-0.3
2,759,012	-		CSW01_12900	0.15	+0.3
2,759,012	-		CSW01_12900	0.15	+0.1
2,759,012	-		CSW01_12900	0.15	+0.1
2,759,012	-		CSW01_12900	0.15	-3.2
2,759,012	-		CSW01_12900	0.15	-2.5
2,759,012	-		CSW01_12900	0.15	+0.6
2,759,012	-		CSW01_12900	0.15	-0.4
2,759,012	-		CSW01_12900	0.15	+0.2
2,759,055	-		CSW01_12900	0.16	+0.2
2,759,091	-		CSW01_12900	0.17	+0.8
2,759,111	+		CSW01_12900	0.18	+1.0
2,759,163	+		CSW01_12900	0.19	-2.1
2,759,322	+		CSW01_12900	0.23	+0.2
2,759,338	+		CSW01_12900	0.24	-2.7
2,759,339	+		CSW01_12900	0.24	+0.1
2,759,339	+		CSW01_12900	0.24	-1.4
2,759,339	+		CSW01_12900	0.24	-1.4
2,759,340	-		CSW01_12900	0.24	-1.4
2,759,347	-		CSW01_12900	0.24	-0.3
2,759,357	-		CSW01_12900	0.24	-0.3
2,759,390	-		CSW01_12900	0.25	+0.1
2,759,403	-		CSW01_12900	0.25	+0.9
2,759,418	-		CSW01_12900	0.26	+0.4
2,759,443	+		CSW01_12900	0.26	+0.8
2,759,453	+		CSW01_12900	0.27	-0.4
2,759,463	+		CSW01_12900	0.27	+0.9
2,759,476	+		CSW01_12900	0.27	-0.3
2,759,478	+		CSW01_12900	0.27	-3.0
2,759,486	-		CSW01_12900	0.28	+0.2
2,759,514	+		CSW01_12900	0.28	+0.8
2,759,522	-		CSW01_12900	0.28	+0.6
2,759,559	-		CSW01_12900	0.29	+0.3
2,759,603	+		CSW01_12900	0.31	-2.2
2,759,687	+		CSW01_12900	0.33	-4.0
2,759,695	-		CSW01_12900	0.33	-1.4
2,759,695	-		CSW01_12900	0.33	-1.5
2,759,707	+		CSW01_12900	0.33	+0.4
2,759,893	+		CSW01_12900	0.38	+0.6
2,759,903	+		CSW01_12900	0.39	-0.9
2,759,914	+		CSW01_12900	0.39	+1.0
2,759,922	-		CSW01_12900	0.39	-3.6
2,759,944	+		CSW01_12900	0.40	+0.7
2,759,987	-		CSW01_12900	0.41	-0.6
2,760,085	-		CSW01_12900	0.43	+1.2
2,760,085	-		CSW01_12900	0.43	-2.5
2,760,087	+		CSW01_12900	0.44	-0.5
2,760,104	+		CSW01_12900	0.44	-0.4
2,760,111	+		CSW01_12900	0.44	-3.0
2,760,146	+		CSW01_12900	0.45	+0.1
2,760,154	-		CSW01_12900	0.45	+0.5
2,760,154	-		CSW01_12900	0.45	-2.5
2,760,188	-		CSW01_12900	0.46	-0.9
2,760,236	+		CSW01_12900	0.47	+2.8
2,760,240	+		CSW01_12900	0.48	-1.9
2,760,245	-		CSW01_12900	0.48	-3.8
2,760,284	-		CSW01_12900	0.49	+0.9
2,760,319	-		CSW01_12900	0.50	+0.8
2,760,380	-		CSW01_12900	0.51	+0.5
2,760,380	-		CSW01_12900	0.51	+1.2
2,760,380	-		CSW01_12900	0.51	+0.5
2,760,389	+		CSW01_12900	0.52	-0.2
2,760,389	+		CSW01_12900	0.52	-0.8
2,760,389	+		CSW01_12900	0.52	+0.1
2,760,397	-		CSW01_12900	0.52	-2.8
2,760,397	-		CSW01_12900	0.52	-1.0
2,760,397	-		CSW01_12900	0.52	-1.1
2,760,397	-		CSW01_12900	0.52	+1.7
2,760,397	-		CSW01_12900	0.52	-0.9
2,760,397	-		CSW01_12900	0.52	+0.5
2,760,502	+		CSW01_12900	0.55	+0.2
2,760,510	-		CSW01_12900	0.55	-0.1
2,760,537	-		CSW01_12900	0.55	-2.9
2,760,542	-		CSW01_12900	0.56	-0.1
2,760,679	+		CSW01_12900	0.59	-2.4
2,760,679	+		CSW01_12900	0.59	-3.5
2,760,702	+		CSW01_12900	0.60	-0.4
2,760,857	-		CSW01_12900	0.64	-1.4
2,760,862	+		CSW01_12900	0.64	+0.1
2,760,876	-		CSW01_12900	0.64	+0.9
2,760,954	-		CSW01_12900	0.67	+0.0
2,760,971	-		CSW01_12900	0.67	-0.8
2,761,028	+		CSW01_12900	0.68	+0.5
2,761,031	-		CSW01_12900	0.69	-0.8
2,761,036	-		CSW01_12900	0.69	-0.3
2,761,069	-		CSW01_12900	0.70	-3.9
2,761,079	-		CSW01_12900	0.70	-2.5
2,761,091	+		CSW01_12900	0.70	+0.5
2,761,109	-		CSW01_12900	0.71	-3.1
2,761,109	-		CSW01_12900	0.71	-1.2
2,761,123	+		CSW01_12900	0.71	-0.5
2,761,165	+		CSW01_12900	0.72	-0.4
2,761,189	-		CSW01_12900	0.73	+1.2
2,761,209	+		CSW01_12900	0.73	-0.9
2,761,222	-		CSW01_12900	0.74	-3.1
2,761,235	-		CSW01_12900	0.74	-0.2
2,761,235	-		CSW01_12900	0.74	+0.3
2,761,235	-		CSW01_12900	0.74	-3.8
2,761,241	+		CSW01_12900	0.74	+0.5
2,761,260	+		CSW01_12900	0.75	+0.2
2,761,260	+		CSW01_12900	0.75	+0.2
2,761,260	+		CSW01_12900	0.75	+0.2
2,761,260	+		CSW01_12900	0.75	+1.3
2,761,268	-		CSW01_12900	0.75	-0.1
2,761,268	-		CSW01_12900	0.75	-1.1
2,761,282	+		CSW01_12900	0.75	-1.0
2,761,282	+		CSW01_12900	0.75	+0.3
2,761,285	-		CSW01_12900	0.75	-2.1
2,761,290	-		CSW01_12900	0.75	+0.5
2,761,290	-		CSW01_12900	0.75	-0.4
2,761,290	-		CSW01_12900	0.75	+0.9
2,761,295	-		CSW01_12900	0.76	+1.4
2,761,309	-		CSW01_12900	0.76	-1.9
2,761,316	-		CSW01_12900	0.76	-2.6
2,761,357	-		CSW01_12900	0.77	+1.5
2,761,357	-		CSW01_12900	0.77	-2.5
2,761,363	+		CSW01_12900	0.77	+0.6
2,761,409	+		CSW01_12900	0.79	+0.3
2,761,432	-		CSW01_12900	0.79	+0.9
2,761,454	-		CSW01_12900	0.80	-0.9
2,761,465	-		CSW01_12900	0.80	-2.1
2,761,508	-		CSW01_12900	0.81	+2.2
2,761,536	+		CSW01_12900	0.82	-1.4
2,761,544	-		CSW01_12900	0.82	-0.1
2,761,556	-		CSW01_12900	0.83	-2.5
2,761,663	-		CSW01_12900	0.85	+0.6
2,761,736	+		CSW01_12900	0.87	-0.9
2,761,749	-		CSW01_12900	0.88	-0.1
2,761,831	+		CSW01_12900	0.90	-4.4
2,761,862	+				-0.5
2,761,862	+				+0.3
2,761,870	-				-3.8
2,761,870	-				+0.6
2,761,870	-				+2.6
2,761,896	-				-0.1
2,761,936	+				-3.7
2,762,056	+				-2.1
2,762,064	-				+0.3
2,762,064	-				+0.1
2,762,138	-				+0.2
2,762,183	+				-4.0
2,762,298	-				-0.5
2,762,349	+				+0.4
2,762,376	+				-1.3
2,762,376	+				-0.1
2,762,384	-				-0.5
2,762,399	-		CSW01_12905	0.11	+0.1
2,762,435	+		CSW01_12905	0.13	-3.4
2,762,499	-		CSW01_12905	0.17	-2.0
2,762,555	-		CSW01_12905	0.20	-2.1
2,762,640	+		CSW01_12905	0.25	-0.1
2,762,659	+		CSW01_12905	0.26	-2.9
2,762,678	-		CSW01_12905	0.27	-0.6
2,762,703	-		CSW01_12905	0.28	+1.2
2,762,739	+		CSW01_12905	0.30	-0.7
2,762,741	+		CSW01_12905	0.30	+0.9
2,762,741	+		CSW01_12905	0.30	+1.1
2,762,747	-		CSW01_12905	0.31	+1.5
2,762,769	-		CSW01_12905	0.32	-1.2
2,762,769	-		CSW01_12905	0.32	-3.2
2,762,769	-		CSW01_12905	0.32	-1.7
2,762,848	-		CSW01_12905	0.36	+0.3
2,762,940	+		CSW01_12905	0.42	+1.5
2,762,943	-		CSW01_12905	0.42	-1.9
2,762,991	+		CSW01_12905	0.45	-0.8
2,763,047	+		CSW01_12905	0.48	-0.6
2,763,048	-		CSW01_12905	0.48	-2.2
2,763,073	-		CSW01_12905	0.49	-0.7
2,763,099	+		CSW01_12905	0.51	-4.0
2,763,099	+		CSW01_12905	0.51	-2.6
2,763,117	-		CSW01_12905	0.52	+1.0
2,763,127	-		CSW01_12905	0.52	+1.1
2,763,154	+		CSW01_12905	0.54	-2.6
2,763,154	+		CSW01_12905	0.54	+0.0
2,763,154	+		CSW01_12905	0.54	+0.3
2,763,156	+		CSW01_12905	0.54	+2.4
2,763,162	-		CSW01_12905	0.54	-1.1
2,763,162	-		CSW01_12905	0.54	-0.2
2,763,162	-		CSW01_12905	0.54	+0.2
2,763,164	-		CSW01_12905	0.55	-1.3
2,763,164	-		CSW01_12905	0.55	+0.7