Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12275

Experiment: ICP3_phage_0.41_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_0.41_MOI_rep1
2,628,074	+		CSW01_12265	0.67	+0.9
2,628,074	-		CSW01_12265	0.67	-1.4
2,628,074	-		CSW01_12265	0.67	-1.1
2,628,130	-		CSW01_12265	0.73	+0.2
2,628,158	-		CSW01_12265	0.77	+0.6
2,628,180	+		CSW01_12265	0.79	-4.3
2,628,188	-		CSW01_12265	0.80	-4.8
2,628,213	+		CSW01_12265	0.83	+0.8
2,628,213	+		CSW01_12265	0.83	-3.2
2,628,213	+		CSW01_12265	0.83	-0.1
2,628,213	+		CSW01_12265	0.83	+0.8
2,628,213	+		CSW01_12265	0.83	+0.7
2,628,213	+		CSW01_12265	0.83	-0.3
2,628,213	+		CSW01_12265	0.83	-1.6
2,628,213	+		CSW01_12265	0.83	-3.8
2,628,213	+		CSW01_12265	0.83	+0.5
2,628,213	+		CSW01_12265	0.83	-4.0
2,628,213	+		CSW01_12265	0.83	-1.6
2,628,213	+		CSW01_12265	0.83	-3.4
2,628,221	-		CSW01_12265	0.84	-1.0
2,628,221	-		CSW01_12265	0.84	-0.3
2,628,221	-		CSW01_12265	0.84	-2.4
2,628,221	-		CSW01_12265	0.84	-4.4
2,628,266	+		CSW01_12265	0.89	+0.4
2,628,288	-				+0.1
2,628,294	+				-2.2
2,628,327	+				+3.7
2,628,327	+				-0.8
2,628,327	+				+1.0
2,628,327	+				-1.3
2,628,327	+				-2.8
2,628,327	+				-0.3
2,628,327	+				-1.6
2,628,335	+				+1.4
2,628,335	-				+0.1
2,628,335	-				-2.5
2,628,335	-				-2.1
2,628,335	-				+0.4
2,628,528	-				-0.2
2,628,564	+				-3.2
2,628,564	+				-0.8
2,628,572	-				-2.3
2,628,760	+		CSW01_12270	0.32	+0.4
2,628,842	+		CSW01_12270	0.50	+1.3
2,628,861	+		CSW01_12270	0.54	+0.9
2,628,861	+		CSW01_12270	0.54	-0.7
2,628,863	+		CSW01_12270	0.55	+1.7
2,628,863	+		CSW01_12270	0.55	-1.6
2,628,871	-		CSW01_12270	0.56	+0.6
2,628,871	-		CSW01_12270	0.56	+0.7
2,628,871	-		CSW01_12270	0.56	+1.6
2,628,894	-		CSW01_12270	0.61	-0.1
2,628,894	-		CSW01_12270	0.61	-3.0
2,628,905	-		CSW01_12270	0.64	-1.7
2,628,953	+		CSW01_12270	0.74	-0.8
2,629,003	-		CSW01_12270	0.85	+1.0
2,629,011	+		CSW01_12270	0.87	-1.3
2,629,098	+				+1.6
2,629,106	-				+1.6
2,629,106	-				+0.4
2,629,108	+				+1.7
2,629,108	+				+0.5
2,629,108	+				+1.0
2,629,116	-				-3.3
2,629,121	-				+1.1
2,629,149	+				+0.1
2,629,149	+				+0.6
2,629,149	+				-1.8
2,629,149	+				-0.3
2,629,149	+				-1.8
2,629,149	+				+0.5
2,629,157	-				+0.3
2,629,157	-				-2.4
2,629,157	-				-0.5
2,629,157	-				-0.4
2,629,157	-				-2.9
2,629,157	-				-1.5
2,629,208	+				-1.3
2,629,208	+				-0.4
2,629,208	+				+0.3
2,629,208	+				-1.5
2,629,216	-				-2.3
2,629,216	-				+1.5
2,629,216	-				-1.4
2,629,303	-		CSW01_12275	0.14	-1.5
2,629,348	-		CSW01_12275	0.16	-0.3
2,629,378	+		CSW01_12275	0.18	-2.0
2,629,386	-		CSW01_12275	0.19	+1.2
2,629,386	-		CSW01_12275	0.19	+3.2
2,629,460	-		CSW01_12275	0.23	-2.6
2,629,498	+		CSW01_12275	0.25	+1.5
2,629,532	+		CSW01_12275	0.27	+1.5
2,629,540	-		CSW01_12275	0.28	-0.5
2,629,540	-		CSW01_12275	0.28	+1.4
2,629,554	+		CSW01_12275	0.29	+1.3
2,629,616	-		CSW01_12275	0.32	-1.3
2,629,631	+		CSW01_12275	0.33	-0.1
2,629,636	+		CSW01_12275	0.33	-0.9
2,629,653	+		CSW01_12275	0.34	-3.9
2,629,653	+		CSW01_12275	0.34	-3.2
2,629,653	+		CSW01_12275	0.34	-0.9
2,629,676	+		CSW01_12275	0.36	-0.9
2,629,708	+		CSW01_12275	0.38	+0.9
2,629,767	+		CSW01_12275	0.41	+0.3
2,629,767	+		CSW01_12275	0.41	+0.3
2,629,775	-		CSW01_12275	0.42	-0.3
2,629,777	-		CSW01_12275	0.42	+0.7
2,629,891	+		CSW01_12275	0.48	-1.5
2,629,931	-		CSW01_12275	0.51	+0.3
2,629,956	-		CSW01_12275	0.52	+1.1
2,629,987	+		CSW01_12275	0.54	+1.0
2,630,070	+		CSW01_12275	0.59	+0.4
2,630,070	+		CSW01_12275	0.59	+0.5
2,630,075	+		CSW01_12275	0.59	+1.2
2,630,075	+		CSW01_12275	0.59	+0.9
2,630,075	+		CSW01_12275	0.59	-2.2
2,630,075	+		CSW01_12275	0.59	-1.2
2,630,075	+		CSW01_12275	0.59	-1.1
2,630,075	+		CSW01_12275	0.59	+0.4
2,630,075	+		CSW01_12275	0.59	+0.3
2,630,075	+		CSW01_12275	0.59	+2.4
2,630,075	+		CSW01_12275	0.59	-0.5
2,630,075	+		CSW01_12275	0.59	-1.6
2,630,075	+		CSW01_12275	0.59	+0.2
2,630,075	+		CSW01_12275	0.59	-0.0
2,630,075	+		CSW01_12275	0.59	-1.0
2,630,075	+		CSW01_12275	0.59	+0.3
2,630,078	-		CSW01_12275	0.60	+0.8
2,630,078	-		CSW01_12275	0.60	-0.2
2,630,080	+		CSW01_12275	0.60	+0.5
2,630,083	-		CSW01_12275	0.60	-0.2
2,630,083	-		CSW01_12275	0.60	+0.9
2,630,083	-		CSW01_12275	0.60	+0.8
2,630,083	-		CSW01_12275	0.60	-3.9
2,630,083	-		CSW01_12275	0.60	-3.3
2,630,083	-		CSW01_12275	0.60	+1.2
2,630,083	-		CSW01_12275	0.60	+0.5
2,630,083	-		CSW01_12275	0.60	+1.4
2,630,083	-		CSW01_12275	0.60	+1.9
2,630,083	-		CSW01_12275	0.60	+1.3
2,630,083	-		CSW01_12275	0.60	+0.5
2,630,083	-		CSW01_12275	0.60	+0.3
2,630,083	-		CSW01_12275	0.60	-0.6
2,630,083	-		CSW01_12275	0.60	-3.0
2,630,083	-		CSW01_12275	0.60	+1.0
2,630,083	-		CSW01_12275	0.60	+0.3
2,630,083	-		CSW01_12275	0.60	-0.7
2,630,083	-		CSW01_12275	0.60	-1.7
2,630,088	-		CSW01_12275	0.60	+0.3
2,630,099	+		CSW01_12275	0.61	+1.6
2,630,138	+		CSW01_12275	0.63	+1.5
2,630,138	+		CSW01_12275	0.63	-5.1
2,630,146	-		CSW01_12275	0.64	+0.7
2,630,148	+		CSW01_12275	0.64	-0.5
2,630,203	-		CSW01_12275	0.67	+0.7
2,630,245	-		CSW01_12275	0.69	-0.0
2,630,323	-		CSW01_12275	0.74	-2.8
2,630,350	-		CSW01_12275	0.76	+0.6
2,630,374	-		CSW01_12275	0.77	-0.6
2,630,403	-		CSW01_12275	0.79	-2.7
2,630,405	+		CSW01_12275	0.79	-0.0
2,630,424	-		CSW01_12275	0.80	+0.3
2,630,468	+		CSW01_12275	0.83	-0.4
2,630,476	-		CSW01_12275	0.83	+0.4
2,630,481	-		CSW01_12275	0.83	-0.3
2,630,595	+				+2.1
2,630,595	+				+0.4
2,630,595	-				-2.2
2,630,603	-				-2.1
2,630,618	+				+0.8
2,630,626	-				-2.9
2,630,753	+				+0.2
2,630,794	+				+0.3
2,630,812	+				-4.1
2,630,820	-				+0.1
2,630,820	-				+1.3
2,630,820	-				-1.9
2,630,848	+				-0.6
2,630,919	+				+0.8
2,630,919	+				+0.2
2,630,919	+				-0.5
2,630,919	+				+1.1
2,630,919	+				-1.2
2,630,927	-		CSW01_12280	0.10	-0.6
2,630,981	+		CSW01_12280	0.15	+1.8
2,630,981	+		CSW01_12280	0.15	-4.1
2,630,982	+		CSW01_12280	0.15	-0.8
2,630,989	-		CSW01_12280	0.15	-3.1
2,630,989	-		CSW01_12280	0.15	-2.0
2,631,038	-		CSW01_12280	0.19	+1.6
2,631,038	-		CSW01_12280	0.19	-4.1
2,631,052	+		CSW01_12280	0.20	-2.5
2,631,053	-		CSW01_12280	0.20	-1.0
2,631,096	+		CSW01_12280	0.24	+1.2
2,631,224	+		CSW01_12280	0.34	-1.4
2,631,245	+		CSW01_12280	0.36	+2.0
2,631,261	-		CSW01_12280	0.37	-3.3
2,631,299	+		CSW01_12280	0.40	-1.7
2,631,307	-		CSW01_12280	0.41	+0.2
2,631,316	+		CSW01_12280	0.42	+0.1
2,631,321	+		CSW01_12280	0.42	-1.4
2,631,329	-		CSW01_12280	0.43	-0.1
2,631,364	+		CSW01_12280	0.46	+1.1
2,631,378	-		CSW01_12280	0.47	-2.9
2,631,383	-		CSW01_12280	0.47	+1.8
2,631,422	-		CSW01_12280	0.50	+0.5
2,631,427	-		CSW01_12280	0.51	+1.2
2,631,427	-		CSW01_12280	0.51	-0.8
2,631,427	-		CSW01_12280	0.51	-0.5
2,631,429	+		CSW01_12280	0.51	+1.8
2,631,429	+		CSW01_12280	0.51	+0.4
2,631,442	-		CSW01_12280	0.52	+1.6
2,631,457	+		CSW01_12280	0.53	-0.0
2,631,465	-		CSW01_12280	0.54	-1.7
2,631,465	-		CSW01_12280	0.54	-0.3
2,631,467	+		CSW01_12280	0.54	-1.3
2,631,467	+		CSW01_12280	0.54	+0.7
2,631,474	+		CSW01_12280	0.55	-0.1
2,631,475	-		CSW01_12280	0.55	+0.8
2,631,482	-		CSW01_12280	0.55	-0.6
2,631,491	+		CSW01_12280	0.56	+0.0
2,631,547	+		CSW01_12280	0.61	-1.8
2,631,566	-		CSW01_12280	0.62	+1.4
2,631,635	+		CSW01_12280	0.68	-0.8
2,631,683	+		CSW01_12280	0.72	-0.3
2,631,697	+		CSW01_12280	0.73	-0.2
2,631,739	+		CSW01_12280	0.76	-0.1