Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11060

Experiment: ICP3_phage_0.41_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_0.41_MOI_rep1
2,348,848	+				+2.2
2,348,895	-		CSW01_11055	0.10	-0.1
2,348,916	-		CSW01_11055	0.12	+0.5
2,348,925	+		CSW01_11055	0.13	+0.6
2,348,925	+		CSW01_11055	0.13	-0.1
2,348,930	+		CSW01_11055	0.14	+0.4
2,348,938	-		CSW01_11055	0.14	+0.1
2,348,938	-		CSW01_11055	0.14	-1.0
2,348,938	-		CSW01_11055	0.14	+0.3
2,348,943	-		CSW01_11055	0.15	-0.3
2,348,947	+		CSW01_11055	0.15	+0.9
2,348,954	+		CSW01_11055	0.16	-0.2
2,348,955	-		CSW01_11055	0.16	+0.4
2,348,981	-		CSW01_11055	0.19	-3.4
2,348,982	-		CSW01_11055	0.19	+0.2
2,349,084	+		CSW01_11055	0.29	+0.7
2,349,109	-		CSW01_11055	0.31	-1.8
2,349,116	+		CSW01_11055	0.32	+0.2
2,349,116	+		CSW01_11055	0.32	+0.5
2,349,116	+		CSW01_11055	0.32	-1.5
2,349,116	+		CSW01_11055	0.32	-0.6
2,349,116	+		CSW01_11055	0.32	+0.4
2,349,116	+		CSW01_11055	0.32	+1.9
2,349,119	-		CSW01_11055	0.32	+1.7
2,349,124	-		CSW01_11055	0.33	-0.6
2,349,124	-		CSW01_11055	0.33	+0.1
2,349,124	-		CSW01_11055	0.33	+1.3
2,349,124	-		CSW01_11055	0.33	-0.0
2,349,124	-		CSW01_11055	0.33	+1.9
2,349,124	-		CSW01_11055	0.33	+0.6
2,349,124	-		CSW01_11055	0.33	+1.1
2,349,124	-		CSW01_11055	0.33	-0.7
2,349,135	+		CSW01_11055	0.34	+0.2
2,349,140	+		CSW01_11055	0.34	+0.3
2,349,144	-		CSW01_11055	0.35	-2.4
2,349,211	+		CSW01_11055	0.41	-1.6
2,349,300	+		CSW01_11055	0.50	+0.4
2,349,319	+		CSW01_11055	0.52	+0.3
2,349,325	+		CSW01_11055	0.53	+0.9
2,349,378	+		CSW01_11055	0.58	-1.5
2,349,441	+		CSW01_11055	0.64	+1.5
2,349,469	+		CSW01_11055	0.67	-3.4
2,349,477	-		CSW01_11055	0.68	-2.9
2,349,514	-		CSW01_11055	0.71	+0.3
2,349,584	+		CSW01_11055	0.78	+0.8
2,349,584	+		CSW01_11055	0.78	+0.1
2,349,584	+		CSW01_11055	0.78	+0.5
2,349,592	-		CSW01_11055	0.79	+1.3
2,349,592	-		CSW01_11055	0.79	+0.0
2,349,592	-		CSW01_11055	0.79	-1.6
2,349,592	-		CSW01_11055	0.79	-0.3
2,349,592	-		CSW01_11055	0.79	-2.3
2,349,592	-		CSW01_11055	0.79	-3.2
2,349,622	-		CSW01_11055	0.82	-0.7
2,349,700	+		CSW01_11055	0.90	-0.4
2,349,749	+				+0.7
2,349,845	-				-1.5
2,349,855	-				+0.3
2,349,855	-				-0.2
2,349,855	-				+1.5
2,349,857	-				+1.7
2,349,857	-				-2.8
2,349,857	-				-0.7
2,349,857	-				+1.2
2,349,967	+		CSW01_11060	0.14	-0.7
2,349,986	+		CSW01_11060	0.16	-0.1
2,349,986	+		CSW01_11060	0.16	+1.2
2,349,986	+		CSW01_11060	0.16	-2.0
2,349,986	+		CSW01_11060	0.16	+0.2
2,349,994	-		CSW01_11060	0.17	+0.6
2,349,994	-		CSW01_11060	0.17	+0.3
2,349,994	-		CSW01_11060	0.17	+0.6
2,349,994	-		CSW01_11060	0.17	-2.9
2,349,994	-		CSW01_11060	0.17	+1.2
2,350,009	+		CSW01_11060	0.19	+0.1
2,350,009	+		CSW01_11060	0.19	+1.8
2,350,017	-		CSW01_11060	0.20	+1.5
2,350,080	-		CSW01_11060	0.27	+0.4
2,350,121	-		CSW01_11060	0.31	+2.1
2,350,126	+		CSW01_11060	0.32	-0.5
2,350,145	+		CSW01_11060	0.34	-2.2
2,350,160	-		CSW01_11060	0.36	+1.7
2,350,160	-		CSW01_11060	0.36	+0.6
2,350,174	+		CSW01_11060	0.37	+1.4
2,350,219	+		CSW01_11060	0.42	+1.5
2,350,310	-		CSW01_11060	0.52	-0.7
2,350,369	-		CSW01_11060	0.59	-2.6
2,350,379	+		CSW01_11060	0.60	+0.6
2,350,379	+		CSW01_11060	0.60	+0.3
2,350,379	+		CSW01_11060	0.60	-2.7
2,350,379	+		CSW01_11060	0.60	+0.6
2,350,387	-		CSW01_11060	0.61	+0.0
2,350,387	-		CSW01_11060	0.61	+0.8
2,350,387	-		CSW01_11060	0.61	+0.6
2,350,432	-		CSW01_11060	0.66	+1.4
2,350,433	+		CSW01_11060	0.66	+1.4
2,350,534	+		CSW01_11060	0.77	-1.0
2,350,534	+		CSW01_11060	0.77	-1.3
2,350,608	+		CSW01_11060	0.85	+1.5
2,350,608	+		CSW01_11060	0.85	-0.1
2,350,611	-		CSW01_11060	0.86	-0.4
2,350,611	-		CSW01_11060	0.86	-0.8
2,350,615	+		CSW01_11060	0.86	-1.9
2,350,615	+		CSW01_11060	0.86	-2.7
2,350,615	+		CSW01_11060	0.86	-0.8
2,350,616	-		CSW01_11060	0.86	-0.4
2,350,616	-		CSW01_11060	0.86	+0.7
2,350,623	-		CSW01_11060	0.87	+0.6
2,350,625	+		CSW01_11060	0.87	+1.3
2,350,633	-		CSW01_11060	0.88	-2.3
2,350,633	-		CSW01_11060	0.88	-0.6
2,350,633	-		CSW01_11060	0.88	-0.1
2,350,633	-		CSW01_11060	0.88	+0.3
2,350,635	+		CSW01_11060	0.88	+0.8
2,350,648	-		CSW01_11060	0.90	-0.2
2,350,699	-				+0.6
2,350,742	+				+0.1
2,350,748	-				-1.2
2,350,750	+				+0.2
2,350,750	-				-3.2
2,350,758	-				-0.9
2,350,770	-				-4.9
2,350,770	-				+0.2
2,350,792	-				-1.6
2,350,794	-				+1.5
2,350,821	+				-3.1
2,350,965	+				-0.4
2,351,007	-				+0.2
2,351,193	+		CSW01_11065	0.15	+1.8
2,351,193	+		CSW01_11065	0.15	-0.1
2,351,201	-		CSW01_11065	0.16	+0.8
2,351,212	+		CSW01_11065	0.16	-0.0
2,351,221	+		CSW01_11065	0.17	+0.6
2,351,244	+		CSW01_11065	0.18	-1.7
2,351,272	+		CSW01_11065	0.20	-1.4
2,351,335	+		CSW01_11065	0.23	-2.2
2,351,379	+		CSW01_11065	0.26	+0.8
2,351,431	-		CSW01_11065	0.28	+0.0
2,351,441	-		CSW01_11065	0.29	-2.7
2,351,483	+		CSW01_11065	0.31	-2.0
2,351,483	+		CSW01_11065	0.31	+0.6
2,351,483	+		CSW01_11065	0.31	+0.4
2,351,483	+		CSW01_11065	0.31	+1.5
2,351,483	+		CSW01_11065	0.31	-1.0
2,351,483	+		CSW01_11065	0.31	+0.8
2,351,483	+		CSW01_11065	0.31	-0.8
2,351,483	+		CSW01_11065	0.31	-2.0
2,351,483	+		CSW01_11065	0.31	+0.1
2,351,483	+		CSW01_11065	0.31	+2.0
2,351,483	+		CSW01_11065	0.31	+0.6
2,351,483	+		CSW01_11065	0.31	-0.8
2,351,483	+		CSW01_11065	0.31	+0.3
2,351,491	-		CSW01_11065	0.32	-0.5
2,351,491	-		CSW01_11065	0.32	+3.3
2,351,491	-		CSW01_11065	0.32	+1.3
2,351,491	-		CSW01_11065	0.32	-2.5
2,351,491	-		CSW01_11065	0.32	+1.1
2,351,491	-		CSW01_11065	0.32	-0.2
2,351,491	-		CSW01_11065	0.32	+0.2
2,351,491	-		CSW01_11065	0.32	-0.0
2,351,491	-		CSW01_11065	0.32	-1.2
2,351,491	-		CSW01_11065	0.32	-0.7
2,351,491	-		CSW01_11065	0.32	-0.0
2,351,491	-		CSW01_11065	0.32	+1.3
2,351,493	-		CSW01_11065	0.32	-0.7
2,351,505	+		CSW01_11065	0.33	-0.7
2,351,616	+		CSW01_11065	0.39	-3.2
2,351,635	+		CSW01_11065	0.40	-1.0
2,351,635	+		CSW01_11065	0.40	-0.1
2,351,635	+		CSW01_11065	0.40	+0.2
2,351,635	+		CSW01_11065	0.40	+0.6
2,351,637	-		CSW01_11065	0.40	+1.7
2,351,637	-		CSW01_11065	0.40	-0.6
2,351,655	+		CSW01_11065	0.41	+1.5
2,351,655	+		CSW01_11065	0.41	-3.3
2,351,660	+		CSW01_11065	0.41	-0.3
2,351,660	+		CSW01_11065	0.41	+1.7
2,351,660	+		CSW01_11065	0.41	+0.4
2,351,660	+		CSW01_11065	0.41	-2.4
2,351,663	-		CSW01_11065	0.41	-1.5
2,351,663	-		CSW01_11065	0.41	+0.9
2,351,663	-		CSW01_11065	0.41	+1.7
2,351,668	-		CSW01_11065	0.42	-0.2
2,351,668	-		CSW01_11065	0.42	+1.8
2,351,680	-		CSW01_11065	0.42	+1.7
2,351,693	+		CSW01_11065	0.43	-4.8
2,351,698	+		CSW01_11065	0.43	+0.2
2,351,698	+		CSW01_11065	0.43	-1.1
2,351,698	+		CSW01_11065	0.43	+0.4
2,351,706	-		CSW01_11065	0.44	-1.7
2,351,706	-		CSW01_11065	0.44	-1.2
2,351,706	-		CSW01_11065	0.44	-1.8
2,351,718	+		CSW01_11065	0.44	+0.9