Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10360

Experiment: ICP3_phage_0.41_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_0.41_MOI_rep1
2,225,143	-				-2.1
2,225,143	-				-2.0
2,225,143	-				+0.6
2,225,212	+				+0.8
2,225,225	+				+0.9
2,225,225	+				+0.6
2,225,225	+				+0.0
2,225,225	+				-3.0
2,225,225	+				-0.3
2,225,225	+				+0.6
2,225,225	+				+0.4
2,225,233	-				-0.5
2,225,233	-				-4.1
2,225,233	-				-2.5
2,225,233	-				-1.9
2,225,233	-				-0.5
2,225,233	-				-0.8
2,225,233	-				-1.9
2,225,304	+				-0.7
2,225,304	+				+0.3
2,225,315	+				-3.6
2,225,321	+				+0.4
2,225,327	-				-1.2
2,225,334	+				+0.8
2,225,342	-				-2.4
2,225,342	-				+0.4
2,225,342	-				-0.7
2,225,469	+				-0.1
2,225,479	+				-1.0
2,225,522	-				-0.8
2,225,611	-		CSW01_10355	0.19	+0.3
2,225,689	+		CSW01_10355	0.35	+1.1
2,225,694	+		CSW01_10355	0.36	+0.1
2,225,697	-		CSW01_10355	0.37	-1.6
2,225,697	-		CSW01_10355	0.37	+0.9
2,225,697	-		CSW01_10355	0.37	+1.0
2,225,800	+		CSW01_10355	0.59	-2.6
2,225,800	+		CSW01_10355	0.59	+1.9
2,225,829	+		CSW01_10355	0.65	-0.3
2,225,829	+		CSW01_10355	0.65	+0.6
2,225,854	+		CSW01_10355	0.70	-2.8
2,225,921	-		CSW01_10355	0.84	+1.3
2,226,011	+				+1.7
2,226,019	-				-0.7
2,226,057	+				+1.4
2,226,076	-				+0.0
2,226,137	+				+1.4
2,226,137	+				+1.5
2,226,145	-				-1.1
2,226,195	-				+0.8
2,226,205	-				+0.6
2,226,211	+				-2.7
2,226,214	-				+1.1
2,226,219	-				+0.8
2,226,219	-				-2.2
2,226,232	-				+0.3
2,226,232	-				+0.8
2,226,242	-				-3.4
2,226,274	-				-0.4
2,226,282	-				+0.4
2,226,460	+		CSW01_10360	0.11	+0.8
2,226,460	+		CSW01_10360	0.11	-0.4
2,226,462	+		CSW01_10360	0.11	+0.8
2,226,463	-		CSW01_10360	0.11	+1.4
2,226,468	-		CSW01_10360	0.12	-0.9
2,226,468	-		CSW01_10360	0.12	+1.1
2,226,468	-		CSW01_10360	0.12	-1.1
2,226,468	-		CSW01_10360	0.12	+0.9
2,226,541	+		CSW01_10360	0.14	+1.3
2,226,546	+		CSW01_10360	0.14	+0.7
2,226,572	-		CSW01_10360	0.15	-0.2
2,226,587	+		CSW01_10360	0.16	-0.2
2,226,701	+		CSW01_10360	0.20	-1.6
2,226,701	+		CSW01_10360	0.20	-0.1
2,226,701	+		CSW01_10360	0.20	+0.0
2,226,701	+		CSW01_10360	0.20	+1.2
2,226,701	+		CSW01_10360	0.20	+0.6
2,226,701	+		CSW01_10360	0.20	+0.9
2,226,701	+		CSW01_10360	0.20	-0.1
2,226,701	+		CSW01_10360	0.20	+0.8
2,226,701	+		CSW01_10360	0.20	+0.7
2,226,701	+		CSW01_10360	0.20	-0.6
2,226,701	+		CSW01_10360	0.20	-0.4
2,226,701	+		CSW01_10360	0.20	+0.0
2,226,701	+		CSW01_10360	0.20	+0.3
2,226,701	+		CSW01_10360	0.20	+1.6
2,226,701	+		CSW01_10360	0.20	+0.1
2,226,701	+		CSW01_10360	0.20	+0.7
2,226,707	-		CSW01_10360	0.20	-2.6
2,226,707	-		CSW01_10360	0.20	+1.1
2,226,709	-		CSW01_10360	0.20	-0.0
2,226,709	-		CSW01_10360	0.20	+1.9
2,226,709	-		CSW01_10360	0.20	+0.5
2,226,709	-		CSW01_10360	0.20	+1.0
2,226,709	-		CSW01_10360	0.20	-0.4
2,226,709	-		CSW01_10360	0.20	+0.9
2,226,709	-		CSW01_10360	0.20	+1.8
2,226,709	-		CSW01_10360	0.20	+0.1
2,226,709	-		CSW01_10360	0.20	-0.9
2,226,709	-		CSW01_10360	0.20	-0.5
2,226,709	-		CSW01_10360	0.20	+0.4
2,226,709	-		CSW01_10360	0.20	-0.1
2,226,709	-		CSW01_10360	0.20	-2.3
2,226,709	-		CSW01_10360	0.20	+0.1
2,226,790	-		CSW01_10360	0.23	-2.4
2,226,932	-		CSW01_10360	0.28	-0.8
2,227,008	+		CSW01_10360	0.31	+2.4
2,227,016	-		CSW01_10360	0.31	+0.6
2,227,039	+		CSW01_10360	0.32	-2.3
2,227,042	+		CSW01_10360	0.32	+0.3
2,227,047	-		CSW01_10360	0.32	-0.8
2,227,075	+		CSW01_10360	0.33	-0.5
2,227,098	-		CSW01_10360	0.34	-2.6
2,227,150	-		CSW01_10360	0.36	-1.0
2,227,150	-		CSW01_10360	0.36	+0.4
2,227,205	-		CSW01_10360	0.38	+1.1
2,227,222	+		CSW01_10360	0.38	+0.4
2,227,308	+		CSW01_10360	0.41	-0.3
2,227,433	-		CSW01_10360	0.46	-0.5
2,227,526	+		CSW01_10360	0.49	+2.1
2,227,536	+		CSW01_10360	0.50	+0.5
2,227,544	+		CSW01_10360	0.50	+1.4
2,227,624	+		CSW01_10360	0.53	+1.1
2,227,632	+		CSW01_10360	0.53	-1.9
2,227,633	+		CSW01_10360	0.53	+0.6
2,227,651	+		CSW01_10360	0.54	+1.2
2,227,672	-		CSW01_10360	0.54	-1.6
2,227,718	-		CSW01_10360	0.56	+0.5
2,227,718	-		CSW01_10360	0.56	+1.3
2,227,831	-		CSW01_10360	0.60	+0.6
2,227,860	+		CSW01_10360	0.61	-0.8
2,227,873	-		CSW01_10360	0.61	+1.3
2,227,875	+		CSW01_10360	0.62	+1.9
2,227,954	-		CSW01_10360	0.64	-0.3
2,228,028	+		CSW01_10360	0.67	+1.0
2,228,036	-		CSW01_10360	0.67	+1.1
2,228,036	-		CSW01_10360	0.67	-1.6
2,228,120	+		CSW01_10360	0.70	-0.4
2,228,223	-		CSW01_10360	0.74	+0.6
2,228,235	+		CSW01_10360	0.74	+0.5
2,228,235	+		CSW01_10360	0.74	-0.7
2,228,243	-		CSW01_10360	0.75	-1.1
2,228,267	+		CSW01_10360	0.75	-2.8
2,228,315	-		CSW01_10360	0.77	-0.2
2,228,329	+		CSW01_10360	0.78	+0.8
2,228,329	+		CSW01_10360	0.78	-0.2
2,228,337	-		CSW01_10360	0.78	-0.2
2,228,337	-		CSW01_10360	0.78	+0.1
2,228,396	+		CSW01_10360	0.80	+1.0
2,228,396	+		CSW01_10360	0.80	+2.8
2,228,399	-		CSW01_10360	0.80	+0.7
2,228,404	-		CSW01_10360	0.80	+0.4
2,228,459	-		CSW01_10360	0.82	-0.4
2,228,482	-		CSW01_10360	0.83	+0.9
2,228,575	+		CSW01_10360	0.86	+0.7
2,228,608	-		CSW01_10360	0.88	-0.9
2,228,686	-				+0.9
2,228,703	+				+0.7
2,228,764	+				-3.2
2,228,817	+				+0.8
2,228,886	-				+0.2
2,228,929	-				+2.7
2,228,942	-				-3.2
2,228,961	-				-0.6
2,228,961	-				-3.0
2,229,000	-				-1.2
2,229,002	+				+0.6
2,229,002	+				+0.4
2,229,002	+				-2.4
2,229,002	+				+1.6
2,229,002	+				-0.7
2,229,002	+				-0.4
2,229,010	-				+0.6
2,229,010	-				+0.8
2,229,010	-				-0.7
2,229,010	-				+0.4
2,229,014	+				-2.2
2,229,020	-		CSW01_10365	0.11	+0.4
2,229,064	-		CSW01_10365	0.18	-2.3
2,229,064	-		CSW01_10365	0.18	+0.3
2,229,066	-		CSW01_10365	0.19	+1.6
2,229,135	-		CSW01_10365	0.30	+1.1
2,229,142	+		CSW01_10365	0.31	-0.2
2,229,142	+		CSW01_10365	0.31	-0.1
2,229,150	-		CSW01_10365	0.33	+0.0
2,229,150	-		CSW01_10365	0.33	+0.8
2,229,171	+		CSW01_10365	0.36	+1.4
2,229,172	+		CSW01_10365	0.36	-0.3
2,229,172	-		CSW01_10365	0.36	+2.8
2,229,207	+		CSW01_10365	0.42	-1.5
2,229,216	-		CSW01_10365	0.44	-0.2
2,229,223	+		CSW01_10365	0.45	-1.9
2,229,226	-		CSW01_10365	0.45	+0.9
2,229,228	+		CSW01_10365	0.46	+1.8
2,229,244	+		CSW01_10365	0.48	-0.3
2,229,244	+		CSW01_10365	0.48	+0.2
2,229,244	+		CSW01_10365	0.48	-1.1
2,229,244	+		CSW01_10365	0.48	-3.4
2,229,244	+		CSW01_10365	0.48	-1.8
2,229,252	-		CSW01_10365	0.50	-0.8
2,229,252	-		CSW01_10365	0.50	-0.6
2,229,252	-		CSW01_10365	0.50	-2.2
2,229,254	+		CSW01_10365	0.50	+0.5
2,229,254	+		CSW01_10365	0.50	+0.3
2,229,254	+		CSW01_10365	0.50	-1.6
2,229,282	+		CSW01_10365	0.55	+0.6
2,229,325	+		CSW01_10365	0.62	+0.1
2,229,325	+		CSW01_10365	0.62	-2.6
2,229,333	-		CSW01_10365	0.63	+1.0
2,229,348	-		CSW01_10365	0.66	-1.2
2,229,348	-		CSW01_10365	0.66	-1.4
2,229,377	-		CSW01_10365	0.71	-2.4
2,229,519	+				-1.7
2,229,526	-				+0.8