Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_07715 and CSW01_07720 are separated by 9 nucleotides CSW01_07720 and CSW01_07725 are separated by 522 nucleotides CSW01_07725 and CSW01_07730 are separated by 157 nucleotides CSW01_07730 and CSW01_07735 are separated by 254 nucleotides
CSW01_07715: CSW01_07715 - lipoprotein NlpC, at 1,648,237 to 1,648,737
_07715
CSW01_07720: CSW01_07720 - DUF3802 domain-containing protein, at 1,648,747 to 1,649,088
_07720
CSW01_07725: CSW01_07725 - fructosamine kinase family protein, at 1,649,611 to 1,650,477
_07725
CSW01_07730: CSW01_07730 - CPXCG motif-containing cysteine-rich protein, at 1,650,635 to 1,650,838
_07730
CSW01_07735: CSW01_07735 - multidrug resistance protein NorM, at 1,651,093 to 1,652,466
_07735
Position (kb) 1649
1650
1651 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1648.629 kb on + strand, within CSW01_07715 at 1648.673 kb on - strand, within CSW01_07715 at 1648.780 kb on + strand at 1648.864 kb on + strand, within CSW01_07720 at 1649.238 kb on - strand at 1649.249 kb on - strand at 1649.377 kb on - strand at 1649.447 kb on + strand at 1649.562 kb on + strand at 1649.701 kb on + strand, within CSW01_07725 at 1649.716 kb on - strand, within CSW01_07725 at 1649.814 kb on + strand, within CSW01_07725 at 1649.814 kb on + strand, within CSW01_07725 at 1649.814 kb on + strand, within CSW01_07725 at 1649.842 kb on + strand, within CSW01_07725 at 1649.870 kb on + strand, within CSW01_07725 at 1649.958 kb on + strand, within CSW01_07725 at 1649.960 kb on + strand, within CSW01_07725 at 1649.968 kb on - strand, within CSW01_07725 at 1650.021 kb on + strand, within CSW01_07725 at 1650.021 kb on + strand, within CSW01_07725 at 1650.021 kb on + strand, within CSW01_07725 at 1650.029 kb on - strand, within CSW01_07725 at 1650.069 kb on - strand, within CSW01_07725 at 1650.141 kb on + strand, within CSW01_07725 at 1650.141 kb on + strand, within CSW01_07725 at 1650.176 kb on + strand, within CSW01_07725 at 1650.176 kb on + strand, within CSW01_07725 at 1650.184 kb on - strand, within CSW01_07725 at 1650.184 kb on - strand, within CSW01_07725 at 1650.305 kb on - strand, within CSW01_07725 at 1650.336 kb on - strand, within CSW01_07725 at 1650.407 kb on + strand at 1650.598 kb on + strand at 1650.670 kb on + strand, within CSW01_07730 at 1650.670 kb on + strand, within CSW01_07730 at 1650.733 kb on + strand, within CSW01_07730 at 1650.803 kb on - strand, within CSW01_07730 at 1651.070 kb on - strand at 1651.179 kb on - strand at 1651.314 kb on + strand, within CSW01_07735 at 1651.314 kb on + strand, within CSW01_07735 at 1651.314 kb on + strand, within CSW01_07735 at 1651.352 kb on + strand, within CSW01_07735 at 1651.371 kb on - strand, within CSW01_07735 at 1651.475 kb on + strand, within CSW01_07735
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 1,648,629 + CSW01_07715 0.78 -0.2 1,648,673 - CSW01_07715 0.87 +0.8 1,648,780 + +0.9 1,648,864 + CSW01_07720 0.34 +0.4 1,649,238 - -0.1 1,649,249 - -0.4 1,649,377 - +0.1 1,649,447 + -2.1 1,649,562 + +1.2 1,649,701 + CSW01_07725 0.10 +0.4 1,649,716 - CSW01_07725 0.12 -1.3 1,649,814 + CSW01_07725 0.23 -2.2 1,649,814 + CSW01_07725 0.23 +0.4 1,649,814 + CSW01_07725 0.23 -1.1 1,649,842 + CSW01_07725 0.27 -0.8 1,649,870 + CSW01_07725 0.30 +0.3 1,649,958 + CSW01_07725 0.40 -0.6 1,649,960 + CSW01_07725 0.40 -0.3 1,649,968 - CSW01_07725 0.41 -0.5 1,650,021 + CSW01_07725 0.47 +0.1 1,650,021 + CSW01_07725 0.47 +2.1 1,650,021 + CSW01_07725 0.47 -0.7 1,650,029 - CSW01_07725 0.48 +0.2 1,650,069 - CSW01_07725 0.53 +0.5 1,650,141 + CSW01_07725 0.61 -0.8 1,650,141 + CSW01_07725 0.61 +0.6 1,650,176 + CSW01_07725 0.65 +3.1 1,650,176 + CSW01_07725 0.65 -0.3 1,650,184 - CSW01_07725 0.66 -0.9 1,650,184 - CSW01_07725 0.66 +0.0 1,650,305 - CSW01_07725 0.80 +0.3 1,650,336 - CSW01_07725 0.84 +0.1 1,650,407 + -0.0 1,650,598 + +0.2 1,650,670 + CSW01_07730 0.17 -1.9 1,650,670 + CSW01_07730 0.17 -0.1 1,650,733 + CSW01_07730 0.48 +0.1 1,650,803 - CSW01_07730 0.82 +0.8 1,651,070 - +0.9 1,651,179 - +0.9 1,651,314 + CSW01_07735 0.16 +0.6 1,651,314 + CSW01_07735 0.16 -0.7 1,651,314 + CSW01_07735 0.16 -1.2 1,651,352 + CSW01_07735 0.19 -1.4 1,651,371 - CSW01_07735 0.20 -0.3 1,651,475 + CSW01_07735 0.28 +0.7
Or see this region's nucleotide sequence