Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07685

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07670 and CSW01_07675 overlap by 4 nucleotidesCSW01_07675 and CSW01_07680 are separated by 130 nucleotidesCSW01_07680 and CSW01_07685 are separated by 43 nucleotidesCSW01_07685 and CSW01_07690 overlap by 47 nucleotidesCSW01_07690 and CSW01_07695 are separated by 73 nucleotides CSW01_07670: CSW01_07670 - amino acid ABC transporter, at 1,641,950 to 1,642,306 _07670 CSW01_07675: CSW01_07675 - amino acid ABC transporter, at 1,642,303 to 1,642,608 _07675 CSW01_07680: CSW01_07680 - hypothetical protein, at 1,642,739 to 1,642,900 _07680 CSW01_07685: CSW01_07685 - DUF2960 domain-containing protein, at 1,642,944 to 1,643,219 _07685 CSW01_07690: CSW01_07690 - hypothetical protein, at 1,643,173 to 1,643,352 _07690 CSW01_07695: CSW01_07695 - N-acetylglucosamine kinase, at 1,643,426 to 1,644,334 _07695 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -2 -1 0 1 2at 1641.974 kb on - strandat 1641.997 kb on - strand, within CSW01_07670at 1642.412 kb on - strand, within CSW01_07675at 1642.436 kb on - strand, within CSW01_07675at 1642.575 kb on - strand, within CSW01_07675at 1642.599 kb on - strandat 1642.729 kb on + strandat 1642.730 kb on + strandat 1642.830 kb on - strand, within CSW01_07680at 1642.922 kb on - strandat 1642.932 kb on - strandat 1642.932 kb on - strandat 1642.932 kb on - strandat 1642.949 kb on - strandat 1642.959 kb on + strandat 1643.047 kb on + strand, within CSW01_07685at 1643.047 kb on + strand, within CSW01_07685at 1643.047 kb on + strand, within CSW01_07685at 1643.047 kb on + strand, within CSW01_07685at 1643.047 kb on + strand, within CSW01_07685at 1643.055 kb on - strand, within CSW01_07685at 1643.399 kb on - strandat 1643.428 kb on + strandat 1643.516 kb on - strandat 1643.670 kb on + strand, within CSW01_07695at 1643.678 kb on - strand, within CSW01_07695at 1643.747 kb on - strand, within CSW01_07695at 1643.903 kb on + strand, within CSW01_07695at 1643.903 kb on + strand, within CSW01_07695at 1643.913 kb on + strand, within CSW01_07695at 1643.913 kb on + strand, within CSW01_07695at 1643.913 kb on + strand, within CSW01_07695at 1643.968 kb on - strand, within CSW01_07695at 1643.994 kb on + strand, within CSW01_07695at 1643.994 kb on + strand, within CSW01_07695at 1643.994 kb on + strand, within CSW01_07695at 1644.002 kb on - strand, within CSW01_07695at 1644.002 kb on - strand, within CSW01_07695at 1644.004 kb on + strand, within CSW01_07695at 1644.097 kb on + strand, within CSW01_07695at 1644.112 kb on - strand, within CSW01_07695at 1644.151 kb on + strand, within CSW01_07695at 1644.181 kb on - strand, within CSW01_07695at 1644.194 kb on + strand, within CSW01_07695

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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1,641,974 - -1.9
1,641,997 - CSW01_07670 0.13 +1.2
1,642,412 - CSW01_07675 0.36 +0.9
1,642,436 - CSW01_07675 0.43 +0.3
1,642,575 - CSW01_07675 0.89 +0.5
1,642,599 - +1.5
1,642,729 + -0.7
1,642,730 + +0.3
1,642,830 - CSW01_07680 0.56 -1.2
1,642,922 - -0.6
1,642,932 - -0.3
1,642,932 - -2.7
1,642,932 - +1.3
1,642,949 - -0.7
1,642,959 + -0.5
1,643,047 + CSW01_07685 0.37 +0.8
1,643,047 + CSW01_07685 0.37 +0.5
1,643,047 + CSW01_07685 0.37 +0.8
1,643,047 + CSW01_07685 0.37 +0.7
1,643,047 + CSW01_07685 0.37 +0.7
1,643,055 - CSW01_07685 0.40 -1.1
1,643,399 - +1.8
1,643,428 + +0.5
1,643,516 - +0.8
1,643,670 + CSW01_07695 0.27 +0.1
1,643,678 - CSW01_07695 0.28 +0.1
1,643,747 - CSW01_07695 0.35 +0.6
1,643,903 + CSW01_07695 0.52 -2.1
1,643,903 + CSW01_07695 0.52 +0.2
1,643,913 + CSW01_07695 0.54 +0.2
1,643,913 + CSW01_07695 0.54 -2.4
1,643,913 + CSW01_07695 0.54 -1.2
1,643,968 - CSW01_07695 0.60 -1.9
1,643,994 + CSW01_07695 0.62 +2.2
1,643,994 + CSW01_07695 0.62 +0.7
1,643,994 + CSW01_07695 0.62 -0.5
1,644,002 - CSW01_07695 0.63 -2.1
1,644,002 - CSW01_07695 0.63 +0.2
1,644,004 + CSW01_07695 0.64 -2.0
1,644,097 + CSW01_07695 0.74 -2.6
1,644,112 - CSW01_07695 0.75 +0.2
1,644,151 + CSW01_07695 0.80 -0.5
1,644,181 - CSW01_07695 0.83 -2.3
1,644,194 + CSW01_07695 0.84 +0.1

Or see this region's nucleotide sequence