Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_06320 and CSW01_06325 are separated by 172 nucleotides CSW01_06325 and CSW01_06330 overlap by 76 nucleotides CSW01_06330 and CSW01_06335 overlap by 4 nucleotides CSW01_06335 and CSW01_06340 overlap by 1 nucleotides CSW01_06340 and CSW01_06345 are separated by 95 nucleotides
CSW01_06320: CSW01_06320 - competence/damage-inducible protein A, at 1,321,670 to 1,322,917
_06320
CSW01_06325: CSW01_06325 - hypothetical protein, at 1,323,090 to 1,323,518
_06325
CSW01_06330: CSW01_06330 - hypothetical protein, at 1,323,443 to 1,323,622
_06330
CSW01_06335: CSW01_06335 - (2Fe-2S)-binding protein, at 1,323,619 to 1,323,897
_06335
CSW01_06340: CSW01_06340 - ribonucleotide-diphosphate reductase subunit beta, at 1,323,897 to 1,325,030
_06340
CSW01_06345: CSW01_06345 - ribonucleoside-diphosphate reductase subunit alpha, at 1,325,126 to 1,327,411
_06345
Position (kb) 1323
1324
1325
1326 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1323.002 kb on + strand at 1323.176 kb on - strand, within CSW01_06325 at 1323.286 kb on - strand, within CSW01_06325 at 1323.378 kb on - strand, within CSW01_06325 at 1323.422 kb on + strand, within CSW01_06325 at 1323.526 kb on + strand, within CSW01_06330 at 1323.534 kb on - strand, within CSW01_06330 at 1323.616 kb on + strand at 1323.647 kb on - strand, within CSW01_06335 at 1323.721 kb on - strand, within CSW01_06335 at 1323.721 kb on - strand, within CSW01_06335 at 1323.773 kb on + strand, within CSW01_06335 at 1323.781 kb on - strand, within CSW01_06335 at 1323.796 kb on + strand, within CSW01_06335 at 1323.801 kb on + strand, within CSW01_06335 at 1323.804 kb on - strand, within CSW01_06335 at 1323.804 kb on - strand, within CSW01_06335 at 1323.814 kb on - strand, within CSW01_06335 at 1323.847 kb on + strand, within CSW01_06335 at 1323.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 1,323,002 + +0.1 1,323,176 - CSW01_06325 0.20 -1.9 1,323,286 - CSW01_06325 0.46 +1.3 1,323,378 - CSW01_06325 0.67 -1.1 1,323,422 + CSW01_06325 0.77 +0.7 1,323,526 + CSW01_06330 0.46 -0.6 1,323,534 - CSW01_06330 0.51 -1.1 1,323,616 + +1.1 1,323,647 - CSW01_06335 0.10 -0.4 1,323,721 - CSW01_06335 0.37 -2.4 1,323,721 - CSW01_06335 0.37 +0.3 1,323,773 + CSW01_06335 0.55 -3.6 1,323,781 - CSW01_06335 0.58 +0.6 1,323,796 + CSW01_06335 0.63 -0.6 1,323,801 + CSW01_06335 0.65 -1.8 1,323,804 - CSW01_06335 0.66 -2.1 1,323,804 - CSW01_06335 0.66 +0.1 1,323,814 - CSW01_06335 0.70 +0.4 1,323,847 + CSW01_06335 0.82 -1.4 1,323,902 - +1.0
Or see this region's nucleotide sequence