Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04745

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04740 and CSW01_04745 overlap by 25 nucleotidesCSW01_04745 and CSW01_04750 overlap by 4 nucleotides CSW01_04740: CSW01_04740 - capsule biosynthesis protein CapK, at 985,336 to 986,676 _04740 CSW01_04745: CSW01_04745 - glycosyltransferase family 1 protein, at 986,652 to 987,749 _04745 CSW01_04750: CSW01_04750 - aspartate-semialdehyde dehydrogenase, at 987,746 to 988,918 _04750 Position (kb) 986 987 988Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 985.702 kb on + strand, within CSW01_04740at 985.702 kb on + strand, within CSW01_04740at 985.789 kb on + strand, within CSW01_04740at 985.791 kb on + strand, within CSW01_04740at 985.799 kb on - strand, within CSW01_04740at 985.809 kb on - strand, within CSW01_04740at 985.814 kb on + strand, within CSW01_04740at 985.814 kb on + strand, within CSW01_04740at 985.863 kb on + strand, within CSW01_04740at 985.870 kb on - strand, within CSW01_04740at 985.878 kb on + strand, within CSW01_04740at 985.885 kb on + strand, within CSW01_04740at 985.968 kb on + strand, within CSW01_04740at 985.968 kb on + strand, within CSW01_04740at 985.968 kb on + strand, within CSW01_04740at 986.003 kb on + strand, within CSW01_04740at 986.011 kb on - strand, within CSW01_04740at 986.045 kb on - strand, within CSW01_04740at 986.116 kb on + strand, within CSW01_04740at 986.126 kb on + strand, within CSW01_04740at 986.167 kb on + strand, within CSW01_04740at 986.171 kb on - strand, within CSW01_04740at 986.203 kb on - strand, within CSW01_04740at 986.252 kb on - strand, within CSW01_04740at 986.395 kb on + strand, within CSW01_04740at 986.427 kb on + strand, within CSW01_04740at 986.458 kb on - strand, within CSW01_04740at 986.475 kb on + strand, within CSW01_04740at 986.485 kb on + strand, within CSW01_04740at 986.560 kb on + strandat 986.614 kb on + strandat 986.673 kb on - strandat 986.715 kb on + strandat 986.715 kb on + strandat 986.715 kb on + strandat 986.723 kb on - strandat 986.739 kb on + strandat 986.746 kb on - strandat 986.747 kb on - strandat 986.798 kb on + strand, within CSW01_04745at 986.813 kb on - strand, within CSW01_04745at 986.813 kb on - strand, within CSW01_04745at 986.813 kb on - strand, within CSW01_04745at 987.052 kb on + strand, within CSW01_04745at 987.136 kb on + strand, within CSW01_04745at 987.144 kb on - strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.164 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.242 kb on + strand, within CSW01_04745at 987.242 kb on + strand, within CSW01_04745at 987.272 kb on - strand, within CSW01_04745at 987.295 kb on + strand, within CSW01_04745at 987.303 kb on - strand, within CSW01_04745at 987.303 kb on - strand, within CSW01_04745at 987.308 kb on + strand, within CSW01_04745at 987.365 kb on - strand, within CSW01_04745at 987.561 kb on + strand, within CSW01_04745at 987.561 kb on + strand, within CSW01_04745at 987.781 kb on - strandat 987.964 kb on + strand, within CSW01_04750at 987.964 kb on + strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 988.181 kb on + strand, within CSW01_04750at 988.181 kb on + strand, within CSW01_04750at 988.181 kb on + strand, within CSW01_04750at 988.242 kb on + strand, within CSW01_04750at 988.250 kb on - strand, within CSW01_04750at 988.250 kb on - strand, within CSW01_04750at 988.365 kb on + strand, within CSW01_04750at 988.375 kb on + strand, within CSW01_04750at 988.396 kb on + strand, within CSW01_04750at 988.396 kb on + strand, within CSW01_04750at 988.404 kb on - strand, within CSW01_04750at 988.409 kb on - strand, within CSW01_04750at 988.421 kb on + strand, within CSW01_04750at 988.429 kb on - strand, within CSW01_04750at 988.433 kb on + strand, within CSW01_04750at 988.433 kb on + strand, within CSW01_04750at 988.441 kb on - strand, within CSW01_04750at 988.531 kb on - strand, within CSW01_04750at 988.538 kb on + strand, within CSW01_04750at 988.554 kb on - strand, within CSW01_04750at 988.624 kb on + strand, within CSW01_04750at 988.686 kb on + strand, within CSW01_04750at 988.688 kb on + strand, within CSW01_04750at 988.694 kb on - strand, within CSW01_04750at 988.694 kb on - strand, within CSW01_04750at 988.694 kb on - strand, within CSW01_04750at 988.700 kb on + strand, within CSW01_04750at 988.719 kb on - strand, within CSW01_04750at 988.730 kb on - strand, within CSW01_04750

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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985,702 + CSW01_04740 0.27 -2.0
985,702 + CSW01_04740 0.27 +0.7
985,789 + CSW01_04740 0.34 +0.3
985,791 + CSW01_04740 0.34 +0.1
985,799 - CSW01_04740 0.35 -1.6
985,809 - CSW01_04740 0.35 -4.1
985,814 + CSW01_04740 0.36 -1.0
985,814 + CSW01_04740 0.36 -0.2
985,863 + CSW01_04740 0.39 +0.8
985,870 - CSW01_04740 0.40 -0.8
985,878 + CSW01_04740 0.40 +1.5
985,885 + CSW01_04740 0.41 +1.2
985,968 + CSW01_04740 0.47 -0.9
985,968 + CSW01_04740 0.47 -0.3
985,968 + CSW01_04740 0.47 -2.1
986,003 + CSW01_04740 0.50 -0.0
986,011 - CSW01_04740 0.50 +0.7
986,045 - CSW01_04740 0.53 +0.8
986,116 + CSW01_04740 0.58 +0.2
986,126 + CSW01_04740 0.59 +1.1
986,167 + CSW01_04740 0.62 -1.5
986,171 - CSW01_04740 0.62 -1.5
986,203 - CSW01_04740 0.65 +1.6
986,252 - CSW01_04740 0.68 +1.5
986,395 + CSW01_04740 0.79 +1.2
986,427 + CSW01_04740 0.81 +1.5
986,458 - CSW01_04740 0.84 -1.0
986,475 + CSW01_04740 0.85 +0.5
986,485 + CSW01_04740 0.86 +0.8
986,560 + +0.3
986,614 + -0.6
986,673 - +0.5
986,715 + -0.9
986,715 + -0.0
986,715 + +0.1
986,723 - -2.4
986,739 + -0.7
986,746 - +1.3
986,747 - -1.8
986,798 + CSW01_04745 0.13 -0.4
986,813 - CSW01_04745 0.15 +0.9
986,813 - CSW01_04745 0.15 -1.0
986,813 - CSW01_04745 0.15 +2.2
987,052 + CSW01_04745 0.36 -0.8
987,136 + CSW01_04745 0.44 +0.5
987,144 - CSW01_04745 0.45 +0.5
987,161 + CSW01_04745 0.46 -1.1
987,161 + CSW01_04745 0.46 -0.6
987,161 + CSW01_04745 0.46 -0.4
987,161 + CSW01_04745 0.46 +1.5
987,161 + CSW01_04745 0.46 -2.6
987,161 + CSW01_04745 0.46 -0.1
987,161 + CSW01_04745 0.46 +0.5
987,161 + CSW01_04745 0.46 +1.3
987,161 + CSW01_04745 0.46 +0.7
987,161 + CSW01_04745 0.46 -2.5
987,164 - CSW01_04745 0.47 +0.6
987,169 - CSW01_04745 0.47 -3.5
987,169 - CSW01_04745 0.47 +0.5
987,169 - CSW01_04745 0.47 +0.8
987,169 - CSW01_04745 0.47 -0.6
987,169 - CSW01_04745 0.47 +0.4
987,169 - CSW01_04745 0.47 -1.1
987,169 - CSW01_04745 0.47 +0.7
987,242 + CSW01_04745 0.54 +1.4
987,242 + CSW01_04745 0.54 -0.8
987,272 - CSW01_04745 0.56 +0.6
987,295 + CSW01_04745 0.59 +1.5
987,303 - CSW01_04745 0.59 -0.4
987,303 - CSW01_04745 0.59 -1.7
987,308 + CSW01_04745 0.60 -2.8
987,365 - CSW01_04745 0.65 -0.6
987,561 + CSW01_04745 0.83 +0.9
987,561 + CSW01_04745 0.83 +1.7
987,781 - +1.4
987,964 + CSW01_04750 0.19 +0.7
987,964 + CSW01_04750 0.19 +0.7
987,972 - CSW01_04750 0.19 -0.9
987,972 - CSW01_04750 0.19 +0.6
987,972 - CSW01_04750 0.19 -1.6
987,972 - CSW01_04750 0.19 -0.3
987,972 - CSW01_04750 0.19 +1.1
988,181 + CSW01_04750 0.37 -3.8
988,181 + CSW01_04750 0.37 -1.8
988,181 + CSW01_04750 0.37 +0.3
988,242 + CSW01_04750 0.42 +1.6
988,250 - CSW01_04750 0.43 -2.0
988,250 - CSW01_04750 0.43 +0.8
988,365 + CSW01_04750 0.53 -3.7
988,375 + CSW01_04750 0.54 -0.4
988,396 + CSW01_04750 0.55 +0.6
988,396 + CSW01_04750 0.55 +1.0
988,404 - CSW01_04750 0.56 +0.8
988,409 - CSW01_04750 0.57 -2.5
988,421 + CSW01_04750 0.58 +0.6
988,429 - CSW01_04750 0.58 -0.4
988,433 + CSW01_04750 0.59 +0.3
988,433 + CSW01_04750 0.59 +1.0
988,441 - CSW01_04750 0.59 +0.2
988,531 - CSW01_04750 0.67 +0.7
988,538 + CSW01_04750 0.68 -2.3
988,554 - CSW01_04750 0.69 +0.4
988,624 + CSW01_04750 0.75 -2.0
988,686 + CSW01_04750 0.80 +0.4
988,688 + CSW01_04750 0.80 -3.4
988,694 - CSW01_04750 0.81 +0.7
988,694 - CSW01_04750 0.81 +0.1
988,694 - CSW01_04750 0.81 +0.7
988,700 + CSW01_04750 0.81 +0.2
988,719 - CSW01_04750 0.83 -0.7
988,730 - CSW01_04750 0.84 -0.2

Or see this region's nucleotide sequence