Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04690

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04670 and CSW01_04675 are separated by 84 nucleotidesCSW01_04675 and CSW01_04680 are separated by 84 nucleotidesCSW01_04680 and CSW01_04685 are separated by 85 nucleotidesCSW01_04685 and CSW01_04690 are separated by 285 nucleotidesCSW01_04690 and CSW01_04695 overlap by 1 nucleotides CSW01_04670: CSW01_04670 - tRNA-Tyr, at 971,910 to 971,994 _04670 CSW01_04675: CSW01_04675 - tRNA-Tyr, at 972,079 to 972,163 _04675 CSW01_04680: CSW01_04680 - tRNA-Tyr, at 972,248 to 972,332 _04680 CSW01_04685: CSW01_04685 - tRNA-Tyr, at 972,418 to 972,502 _04685 CSW01_04690: CSW01_04690 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 972,788 to 973,846 _04690 CSW01_04695: CSW01_04695 - AcrB/AcrD/AcrF family protein, at 973,846 to 976,956 _04695 Position (kb) 972 973 974Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 972.674 kb on + strandat 972.674 kb on + strandat 972.674 kb on + strandat 972.817 kb on - strandat 972.838 kb on - strandat 972.840 kb on + strandat 972.840 kb on + strandat 972.845 kb on + strandat 972.845 kb on + strandat 972.848 kb on - strandat 972.848 kb on - strandat 972.896 kb on + strand, within CSW01_04690at 972.940 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.946 kb on + strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.954 kb on - strand, within CSW01_04690at 972.995 kb on + strand, within CSW01_04690at 973.090 kb on + strand, within CSW01_04690at 973.117 kb on + strand, within CSW01_04690at 973.138 kb on - strand, within CSW01_04690at 973.224 kb on - strand, within CSW01_04690at 973.262 kb on - strand, within CSW01_04690at 973.396 kb on + strand, within CSW01_04690at 973.408 kb on + strand, within CSW01_04690at 973.415 kb on + strand, within CSW01_04690at 973.423 kb on - strand, within CSW01_04690at 973.423 kb on - strand, within CSW01_04690at 973.427 kb on + strand, within CSW01_04690at 973.458 kb on - strand, within CSW01_04690at 973.538 kb on - strand, within CSW01_04690at 973.538 kb on - strand, within CSW01_04690at 973.538 kb on - strand, within CSW01_04690at 973.550 kb on - strand, within CSW01_04690at 973.613 kb on - strand, within CSW01_04690at 973.617 kb on + strand, within CSW01_04690at 973.619 kb on + strand, within CSW01_04690at 973.624 kb on - strand, within CSW01_04690at 973.625 kb on - strand, within CSW01_04690at 973.625 kb on - strand, within CSW01_04690at 973.630 kb on - strand, within CSW01_04690at 973.666 kb on - strand, within CSW01_04690at 973.780 kb on - strandat 973.809 kb on + strandat 973.809 kb on + strandat 973.809 kb on + strandat 973.817 kb on - strandat 973.817 kb on - strandat 973.817 kb on - strandat 973.819 kb on - strandat 973.828 kb on + strandat 973.887 kb on - strandat 973.899 kb on - strandat 973.899 kb on - strandat 973.899 kb on - strandat 973.900 kb on + strandat 973.904 kb on - strandat 973.906 kb on - strandat 973.931 kb on - strandat 973.970 kb on + strandat 974.126 kb on + strandat 974.134 kb on - strandat 974.134 kb on - strandat 974.134 kb on - strandat 974.150 kb on + strandat 974.153 kb on - strandat 974.210 kb on - strand, within CSW01_04695at 974.210 kb on - strand, within CSW01_04695at 974.227 kb on - strand, within CSW01_04695at 974.248 kb on + strand, within CSW01_04695at 974.256 kb on - strand, within CSW01_04695at 974.261 kb on - strand, within CSW01_04695at 974.261 kb on - strand, within CSW01_04695at 974.272 kb on - strand, within CSW01_04695at 974.307 kb on - strand, within CSW01_04695at 974.358 kb on + strand, within CSW01_04695at 974.385 kb on + strand, within CSW01_04695at 974.406 kb on + strand, within CSW01_04695at 974.411 kb on + strand, within CSW01_04695at 974.414 kb on - strand, within CSW01_04695at 974.437 kb on + strand, within CSW01_04695at 974.443 kb on - strand, within CSW01_04695at 974.494 kb on + strand, within CSW01_04695at 974.494 kb on + strand, within CSW01_04695at 974.494 kb on + strand, within CSW01_04695at 974.502 kb on - strand, within CSW01_04695at 974.509 kb on + strand, within CSW01_04695at 974.543 kb on + strand, within CSW01_04695at 974.703 kb on + strand, within CSW01_04695at 974.764 kb on + strand, within CSW01_04695at 974.765 kb on - strand, within CSW01_04695at 974.765 kb on - strand, within CSW01_04695at 974.792 kb on - strand, within CSW01_04695at 974.845 kb on + strand, within CSW01_04695at 974.845 kb on + strand, within CSW01_04695

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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972,674 + -0.5
972,674 + -1.2
972,674 + +0.9
972,817 - +0.1
972,838 - +1.5
972,840 + -1.3
972,840 + +0.6
972,845 + -2.8
972,845 + +1.7
972,848 - +0.0
972,848 - +0.0
972,896 + CSW01_04690 0.10 -0.4
972,940 + CSW01_04690 0.14 -1.9
972,946 + CSW01_04690 0.15 +0.8
972,946 + CSW01_04690 0.15 +2.7
972,946 + CSW01_04690 0.15 +1.9
972,946 + CSW01_04690 0.15 +1.1
972,946 + CSW01_04690 0.15 +0.3
972,946 + CSW01_04690 0.15 -1.9
972,946 + CSW01_04690 0.15 +0.4
972,946 + CSW01_04690 0.15 -0.1
972,946 + CSW01_04690 0.15 -1.8
972,946 + CSW01_04690 0.15 -1.0
972,946 + CSW01_04690 0.15 +1.4
972,946 + CSW01_04690 0.15 -0.7
972,946 + CSW01_04690 0.15 -0.2
972,946 + CSW01_04690 0.15 -1.8
972,946 + CSW01_04690 0.15 +0.0
972,946 + CSW01_04690 0.15 -1.3
972,946 + CSW01_04690 0.15 +0.3
972,946 + CSW01_04690 0.15 -1.2
972,946 + CSW01_04690 0.15 +0.1
972,946 + CSW01_04690 0.15 -3.8
972,954 - CSW01_04690 0.16 +0.1
972,954 - CSW01_04690 0.16 +0.9
972,954 - CSW01_04690 0.16 -1.1
972,954 - CSW01_04690 0.16 +1.5
972,954 - CSW01_04690 0.16 +0.2
972,954 - CSW01_04690 0.16 -3.1
972,954 - CSW01_04690 0.16 -0.1
972,954 - CSW01_04690 0.16 -0.7
972,954 - CSW01_04690 0.16 +1.0
972,954 - CSW01_04690 0.16 -0.4
972,954 - CSW01_04690 0.16 -0.7
972,954 - CSW01_04690 0.16 +0.7
972,954 - CSW01_04690 0.16 +0.0
972,954 - CSW01_04690 0.16 -0.3
972,954 - CSW01_04690 0.16 +0.5
972,954 - CSW01_04690 0.16 -0.0
972,995 + CSW01_04690 0.20 +0.2
973,090 + CSW01_04690 0.29 -0.9
973,117 + CSW01_04690 0.31 -0.4
973,138 - CSW01_04690 0.33 +0.4
973,224 - CSW01_04690 0.41 +1.7
973,262 - CSW01_04690 0.45 -0.9
973,396 + CSW01_04690 0.57 +1.3
973,408 + CSW01_04690 0.59 +1.0
973,415 + CSW01_04690 0.59 -0.1
973,423 - CSW01_04690 0.60 -3.1
973,423 - CSW01_04690 0.60 -0.7
973,427 + CSW01_04690 0.60 -1.3
973,458 - CSW01_04690 0.63 +1.5
973,538 - CSW01_04690 0.71 +1.7
973,538 - CSW01_04690 0.71 -2.2
973,538 - CSW01_04690 0.71 +1.1
973,550 - CSW01_04690 0.72 +0.3
973,613 - CSW01_04690 0.78 -0.9
973,617 + CSW01_04690 0.78 -1.0
973,619 + CSW01_04690 0.78 -1.9
973,624 - CSW01_04690 0.79 +1.0
973,625 - CSW01_04690 0.79 +1.1
973,625 - CSW01_04690 0.79 -2.4
973,630 - CSW01_04690 0.80 +0.2
973,666 - CSW01_04690 0.83 -0.6
973,780 - -2.8
973,809 + -1.5
973,809 + -0.4
973,809 + +0.1
973,817 - +1.7
973,817 - -3.7
973,817 - +0.7
973,819 - +1.3
973,828 + +0.8
973,887 - -0.3
973,899 - +0.5
973,899 - -2.1
973,899 - -0.4
973,900 + +0.4
973,904 - -0.3
973,906 - -2.1
973,931 - -0.4
973,970 + +0.5
974,126 + +0.1
974,134 - +0.7
974,134 - -1.6
974,134 - +1.6
974,150 + +0.4
974,153 - -0.2
974,210 - CSW01_04695 0.12 +0.8
974,210 - CSW01_04695 0.12 +0.3
974,227 - CSW01_04695 0.12 +0.5
974,248 + CSW01_04695 0.13 -2.8
974,256 - CSW01_04695 0.13 +0.9
974,261 - CSW01_04695 0.13 +0.7
974,261 - CSW01_04695 0.13 +0.0
974,272 - CSW01_04695 0.14 +1.9
974,307 - CSW01_04695 0.15 +0.0
974,358 + CSW01_04695 0.16 -0.6
974,385 + CSW01_04695 0.17 +0.3
974,406 + CSW01_04695 0.18 +0.9
974,411 + CSW01_04695 0.18 +0.2
974,414 - CSW01_04695 0.18 -0.6
974,437 + CSW01_04695 0.19 -1.5
974,443 - CSW01_04695 0.19 -1.3
974,494 + CSW01_04695 0.21 +1.5
974,494 + CSW01_04695 0.21 -2.1
974,494 + CSW01_04695 0.21 -0.4
974,502 - CSW01_04695 0.21 +0.9
974,509 + CSW01_04695 0.21 +0.4
974,543 + CSW01_04695 0.22 +0.8
974,703 + CSW01_04695 0.28 +1.0
974,764 + CSW01_04695 0.30 +0.9
974,765 - CSW01_04695 0.30 -0.5
974,765 - CSW01_04695 0.30 +0.3
974,792 - CSW01_04695 0.30 -1.4
974,845 + CSW01_04695 0.32 +1.2
974,845 + CSW01_04695 0.32 -3.5

Or see this region's nucleotide sequence