Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04635 and CSW01_04640 are separated by 36 nucleotides CSW01_04640 and CSW01_04645 overlap by 11 nucleotides CSW01_04645 and CSW01_04650 are separated by 235 nucleotides CSW01_04650 and CSW01_04655 are separated by 64 nucleotides
CSW01_04635: CSW01_04635 - methionine ABC transporter substrate-binding protein MetQ, at 963,932 to 964,741
_04635
CSW01_04640: CSW01_04640 - methionine ABC transporter permease, at 964,778 to 965,455
_04640
CSW01_04645: CSW01_04645 - methionine import ATP-binding protein MetN, at 965,445 to 966,479
_04645
CSW01_04650: CSW01_04650 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 966,715 to 967,275
_04650
CSW01_04655: CSW01_04655 - HTH-type transcriptional regulator TreR, at 967,340 to 968,290
_04655
Position (kb) 965
966
967 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 964.478 kb on + strand, within CSW01_04635 at 964.519 kb on - strand, within CSW01_04635 at 964.657 kb on - strand, within CSW01_04635 at 964.657 kb on - strand, within CSW01_04635 at 964.729 kb on + strand at 964.913 kb on + strand, within CSW01_04640 at 964.913 kb on + strand, within CSW01_04640 at 964.918 kb on + strand, within CSW01_04640 at 965.015 kb on + strand, within CSW01_04640 at 965.015 kb on + strand, within CSW01_04640 at 965.023 kb on - strand, within CSW01_04640 at 965.023 kb on - strand, within CSW01_04640 at 965.052 kb on + strand, within CSW01_04640 at 965.081 kb on + strand, within CSW01_04640 at 965.088 kb on + strand, within CSW01_04640 at 965.096 kb on - strand, within CSW01_04640 at 965.103 kb on + strand, within CSW01_04640 at 965.255 kb on - strand, within CSW01_04640 at 965.266 kb on + strand, within CSW01_04640 at 965.279 kb on - strand, within CSW01_04640 at 965.281 kb on - strand, within CSW01_04640 at 965.283 kb on + strand, within CSW01_04640 at 965.320 kb on + strand, within CSW01_04640 at 965.322 kb on + strand, within CSW01_04640 at 965.381 kb on - strand, within CSW01_04640 at 965.405 kb on - strand at 965.450 kb on + strand at 965.460 kb on - strand at 965.465 kb on - strand at 965.571 kb on - strand, within CSW01_04645 at 965.574 kb on + strand, within CSW01_04645 at 965.574 kb on + strand, within CSW01_04645 at 965.574 kb on + strand, within CSW01_04645 at 965.574 kb on + strand, within CSW01_04645 at 965.582 kb on - strand, within CSW01_04645 at 965.582 kb on - strand, within CSW01_04645 at 965.582 kb on - strand, within CSW01_04645 at 965.600 kb on + strand, within CSW01_04645 at 965.787 kb on - strand, within CSW01_04645 at 965.833 kb on - strand, within CSW01_04645 at 965.833 kb on - strand, within CSW01_04645 at 965.857 kb on - strand, within CSW01_04645 at 965.906 kb on + strand, within CSW01_04645 at 965.914 kb on - strand, within CSW01_04645 at 965.976 kb on + strand, within CSW01_04645 at 965.991 kb on + strand, within CSW01_04645 at 966.257 kb on - strand, within CSW01_04645 at 966.275 kb on + strand, within CSW01_04645 at 966.283 kb on - strand, within CSW01_04645 at 966.485 kb on + strand at 966.485 kb on + strand at 966.485 kb on + strand at 966.485 kb on + strand at 966.485 kb on + strand at 966.485 kb on + strand at 966.485 kb on + strand at 966.485 kb on + strand at 966.485 kb on + strand at 966.493 kb on - strand at 966.495 kb on + strand at 966.501 kb on - strand at 966.942 kb on - strand, within CSW01_04650 at 967.040 kb on + strand, within CSW01_04650 at 967.048 kb on - strand, within CSW01_04650 at 967.185 kb on + strand, within CSW01_04650 at 967.251 kb on - strand at 967.283 kb on + strand at 967.377 kb on + strand at 967.460 kb on - strand, within CSW01_04655
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 964,478 + CSW01_04635 0.67 -0.6 964,519 - CSW01_04635 0.72 -0.1 964,657 - CSW01_04635 0.90 +0.6 964,657 - CSW01_04635 0.90 -1.2 964,729 + +0.4 964,913 + CSW01_04640 0.20 +0.2 964,913 + CSW01_04640 0.20 +0.5 964,918 + CSW01_04640 0.21 -1.3 965,015 + CSW01_04640 0.35 -2.3 965,015 + CSW01_04640 0.35 +0.2 965,023 - CSW01_04640 0.36 +0.9 965,023 - CSW01_04640 0.36 -0.7 965,052 + CSW01_04640 0.40 +0.2 965,081 + CSW01_04640 0.45 -2.3 965,088 + CSW01_04640 0.46 +0.2 965,096 - CSW01_04640 0.47 +0.6 965,103 + CSW01_04640 0.48 -0.4 965,255 - CSW01_04640 0.70 -0.2 965,266 + CSW01_04640 0.72 +2.0 965,279 - CSW01_04640 0.74 -2.2 965,281 - CSW01_04640 0.74 +3.4 965,283 + CSW01_04640 0.74 -4.4 965,320 + CSW01_04640 0.80 +0.3 965,322 + CSW01_04640 0.80 -2.4 965,381 - CSW01_04640 0.89 -0.8 965,405 - -1.8 965,450 + +0.0 965,460 - -0.7 965,465 - -2.1 965,571 - CSW01_04645 0.12 -0.5 965,574 + CSW01_04645 0.12 -0.5 965,574 + CSW01_04645 0.12 +0.2 965,574 + CSW01_04645 0.12 +0.4 965,574 + CSW01_04645 0.12 -2.5 965,582 - CSW01_04645 0.13 +0.1 965,582 - CSW01_04645 0.13 -0.7 965,582 - CSW01_04645 0.13 +0.2 965,600 + CSW01_04645 0.15 -1.1 965,787 - CSW01_04645 0.33 -1.1 965,833 - CSW01_04645 0.37 +1.3 965,833 - CSW01_04645 0.37 -0.5 965,857 - CSW01_04645 0.40 -3.8 965,906 + CSW01_04645 0.45 +0.3 965,914 - CSW01_04645 0.45 -0.1 965,976 + CSW01_04645 0.51 -0.9 965,991 + CSW01_04645 0.53 -2.9 966,257 - CSW01_04645 0.78 -1.1 966,275 + CSW01_04645 0.80 -0.8 966,283 - CSW01_04645 0.81 +1.4 966,485 + +0.4 966,485 + -3.7 966,485 + -2.6 966,485 + -1.4 966,485 + +0.1 966,485 + +1.1 966,485 + +1.3 966,485 + -0.2 966,485 + +0.6 966,493 - +0.8 966,495 + -0.3 966,501 - +1.8 966,942 - CSW01_04650 0.40 +3.8 967,040 + CSW01_04650 0.58 +1.5 967,048 - CSW01_04650 0.59 +1.9 967,185 + CSW01_04650 0.84 +1.9 967,251 - -3.0 967,283 + +0.7 967,377 + +0.8 967,460 - CSW01_04655 0.13 +0.6
Or see this region's nucleotide sequence