Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04630 and CSW01_04635 are separated by 132 nucleotides CSW01_04635 and CSW01_04640 are separated by 36 nucleotides CSW01_04640 and CSW01_04645 overlap by 11 nucleotides
CSW01_04630: CSW01_04630 - hypothetical protein, at 963,023 to 963,799
_04630
CSW01_04635: CSW01_04635 - methionine ABC transporter substrate-binding protein MetQ, at 963,932 to 964,741
_04635
CSW01_04640: CSW01_04640 - methionine ABC transporter permease, at 964,778 to 965,455
_04640
CSW01_04645: CSW01_04645 - methionine import ATP-binding protein MetN, at 965,445 to 966,479
_04645
Position (kb) 964
965
966 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 963.874 kb on + strand at 963.962 kb on - strand at 963.983 kb on - strand at 964.036 kb on + strand, within CSW01_04635 at 964.125 kb on - strand, within CSW01_04635 at 964.148 kb on - strand, within CSW01_04635 at 964.164 kb on - strand, within CSW01_04635 at 964.186 kb on + strand, within CSW01_04635 at 964.253 kb on - strand, within CSW01_04635 at 964.298 kb on + strand, within CSW01_04635 at 964.321 kb on - strand, within CSW01_04635 at 964.384 kb on + strand, within CSW01_04635 at 964.384 kb on + strand, within CSW01_04635 at 964.392 kb on - strand, within CSW01_04635 at 964.392 kb on - strand, within CSW01_04635 at 964.392 kb on - strand, within CSW01_04635 at 964.392 kb on - strand, within CSW01_04635 at 964.478 kb on + strand, within CSW01_04635 at 964.519 kb on - strand, within CSW01_04635 at 964.657 kb on - strand, within CSW01_04635 at 964.657 kb on - strand, within CSW01_04635 at 964.729 kb on + strand at 964.913 kb on + strand, within CSW01_04640 at 964.913 kb on + strand, within CSW01_04640 at 964.918 kb on + strand, within CSW01_04640 at 965.015 kb on + strand, within CSW01_04640 at 965.015 kb on + strand, within CSW01_04640 at 965.023 kb on - strand, within CSW01_04640 at 965.023 kb on - strand, within CSW01_04640 at 965.052 kb on + strand, within CSW01_04640 at 965.081 kb on + strand, within CSW01_04640 at 965.088 kb on + strand, within CSW01_04640 at 965.096 kb on - strand, within CSW01_04640 at 965.103 kb on + strand, within CSW01_04640 at 965.255 kb on - strand, within CSW01_04640 at 965.266 kb on + strand, within CSW01_04640 at 965.279 kb on - strand, within CSW01_04640 at 965.281 kb on - strand, within CSW01_04640 at 965.283 kb on + strand, within CSW01_04640 at 965.320 kb on + strand, within CSW01_04640 at 965.322 kb on + strand, within CSW01_04640 at 965.381 kb on - strand, within CSW01_04640 at 965.405 kb on - strand at 965.450 kb on + strand at 965.460 kb on - strand at 965.465 kb on - strand at 965.571 kb on - strand, within CSW01_04645 at 965.574 kb on + strand, within CSW01_04645 at 965.574 kb on + strand, within CSW01_04645 at 965.574 kb on + strand, within CSW01_04645 at 965.574 kb on + strand, within CSW01_04645 at 965.582 kb on - strand, within CSW01_04645 at 965.582 kb on - strand, within CSW01_04645 at 965.582 kb on - strand, within CSW01_04645 at 965.600 kb on + strand, within CSW01_04645 at 965.787 kb on - strand, within CSW01_04645 at 965.833 kb on - strand, within CSW01_04645 at 965.833 kb on - strand, within CSW01_04645 at 965.857 kb on - strand, within CSW01_04645 at 965.906 kb on + strand, within CSW01_04645 at 965.914 kb on - strand, within CSW01_04645 at 965.976 kb on + strand, within CSW01_04645 at 965.991 kb on + strand, within CSW01_04645 at 966.257 kb on - strand, within CSW01_04645 at 966.275 kb on + strand, within CSW01_04645 at 966.283 kb on - strand, within CSW01_04645
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 963,874 + +0.5 963,962 - -1.0 963,983 - +0.2 964,036 + CSW01_04635 0.13 +0.5 964,125 - CSW01_04635 0.24 -2.0 964,148 - CSW01_04635 0.27 -0.6 964,164 - CSW01_04635 0.29 -1.2 964,186 + CSW01_04635 0.31 +0.1 964,253 - CSW01_04635 0.40 -1.0 964,298 + CSW01_04635 0.45 -0.2 964,321 - CSW01_04635 0.48 -2.0 964,384 + CSW01_04635 0.56 +1.1 964,384 + CSW01_04635 0.56 +1.7 964,392 - CSW01_04635 0.57 +0.3 964,392 - CSW01_04635 0.57 +0.9 964,392 - CSW01_04635 0.57 -0.5 964,392 - CSW01_04635 0.57 -1.3 964,478 + CSW01_04635 0.67 -0.6 964,519 - CSW01_04635 0.72 -0.1 964,657 - CSW01_04635 0.90 +0.6 964,657 - CSW01_04635 0.90 -1.2 964,729 + +0.4 964,913 + CSW01_04640 0.20 +0.2 964,913 + CSW01_04640 0.20 +0.5 964,918 + CSW01_04640 0.21 -1.3 965,015 + CSW01_04640 0.35 -2.3 965,015 + CSW01_04640 0.35 +0.2 965,023 - CSW01_04640 0.36 +0.9 965,023 - CSW01_04640 0.36 -0.7 965,052 + CSW01_04640 0.40 +0.2 965,081 + CSW01_04640 0.45 -2.3 965,088 + CSW01_04640 0.46 +0.2 965,096 - CSW01_04640 0.47 +0.6 965,103 + CSW01_04640 0.48 -0.4 965,255 - CSW01_04640 0.70 -0.2 965,266 + CSW01_04640 0.72 +2.0 965,279 - CSW01_04640 0.74 -2.2 965,281 - CSW01_04640 0.74 +3.4 965,283 + CSW01_04640 0.74 -4.4 965,320 + CSW01_04640 0.80 +0.3 965,322 + CSW01_04640 0.80 -2.4 965,381 - CSW01_04640 0.89 -0.8 965,405 - -1.8 965,450 + +0.0 965,460 - -0.7 965,465 - -2.1 965,571 - CSW01_04645 0.12 -0.5 965,574 + CSW01_04645 0.12 -0.5 965,574 + CSW01_04645 0.12 +0.2 965,574 + CSW01_04645 0.12 +0.4 965,574 + CSW01_04645 0.12 -2.5 965,582 - CSW01_04645 0.13 +0.1 965,582 - CSW01_04645 0.13 -0.7 965,582 - CSW01_04645 0.13 +0.2 965,600 + CSW01_04645 0.15 -1.1 965,787 - CSW01_04645 0.33 -1.1 965,833 - CSW01_04645 0.37 +1.3 965,833 - CSW01_04645 0.37 -0.5 965,857 - CSW01_04645 0.40 -3.8 965,906 + CSW01_04645 0.45 +0.3 965,914 - CSW01_04645 0.45 -0.1 965,976 + CSW01_04645 0.51 -0.9 965,991 + CSW01_04645 0.53 -2.9 966,257 - CSW01_04645 0.78 -1.1 966,275 + CSW01_04645 0.80 -0.8 966,283 - CSW01_04645 0.81 +1.4
Or see this region's nucleotide sequence