Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04540

Experiment: ICP3_phage_0.41_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04535 and CSW01_04540 overlap by 44 nucleotidesCSW01_04540 and CSW01_04545 are separated by 3 nucleotides CSW01_04535: CSW01_04535 - N-acetyltransferase, at 943,106 to 943,729 _04535 CSW01_04540: CSW01_04540 - DUF3301 domain-containing protein, at 943,686 to 943,988 _04540 CSW01_04545: CSW01_04545 - DUF3549 domain-containing protein, at 943,992 to 945,029 _04545 Position (kb) 943 944Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 942.719 kb on + strandat 942.719 kb on + strandat 942.727 kb on - strandat 942.752 kb on - strandat 942.792 kb on + strandat 942.795 kb on - strandat 942.807 kb on + strandat 942.813 kb on + strandat 942.857 kb on + strandat 942.888 kb on - strandat 942.990 kb on - strandat 943.006 kb on + strandat 943.077 kb on + strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.228 kb on + strand, within CSW01_04535at 943.228 kb on + strand, within CSW01_04535at 943.236 kb on - strand, within CSW01_04535at 943.387 kb on + strand, within CSW01_04535at 943.387 kb on + strand, within CSW01_04535at 943.395 kb on - strand, within CSW01_04535at 943.414 kb on - strand, within CSW01_04535at 943.445 kb on + strand, within CSW01_04535at 943.573 kb on + strand, within CSW01_04535at 943.616 kb on - strand, within CSW01_04535at 943.683 kb on + strandat 943.683 kb on + strandat 943.683 kb on + strandat 943.683 kb on + strandat 943.732 kb on - strand, within CSW01_04540at 943.809 kb on + strand, within CSW01_04540at 943.817 kb on - strand, within CSW01_04540at 943.849 kb on - strand, within CSW01_04540at 944.018 kb on + strandat 944.026 kb on - strandat 944.026 kb on - strandat 944.026 kb on - strandat 944.031 kb on + strandat 944.132 kb on + strand, within CSW01_04545at 944.140 kb on - strand, within CSW01_04545at 944.233 kb on - strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.371 kb on - strand, within CSW01_04545at 944.414 kb on + strand, within CSW01_04545at 944.419 kb on + strand, within CSW01_04545at 944.421 kb on + strand, within CSW01_04545at 944.429 kb on - strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.439 kb on - strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.465 kb on - strand, within CSW01_04545at 944.482 kb on - strand, within CSW01_04545at 944.563 kb on - strand, within CSW01_04545at 944.611 kb on + strand, within CSW01_04545at 944.619 kb on - strand, within CSW01_04545at 944.726 kb on - strand, within CSW01_04545at 944.727 kb on - strand, within CSW01_04545at 944.773 kb on + strand, within CSW01_04545at 944.773 kb on + strand, within CSW01_04545at 944.807 kb on + strand, within CSW01_04545at 944.833 kb on + strand, within CSW01_04545at 944.843 kb on + strand, within CSW01_04545at 944.843 kb on + strand, within CSW01_04545at 944.851 kb on - strand, within CSW01_04545at 944.851 kb on - strand, within CSW01_04545at 944.893 kb on + strand, within CSW01_04545at 944.915 kb on - strand, within CSW01_04545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
remove
942,719 + -2.6
942,719 + -2.0
942,727 - -0.1
942,752 - -0.1
942,792 + +0.4
942,795 - +0.3
942,807 + -2.9
942,813 + +1.5
942,857 + +0.0
942,888 - -1.9
942,990 - -0.7
943,006 + +0.2
943,077 + -0.6
943,085 - -0.1
943,085 - +1.0
943,085 - -0.1
943,228 + CSW01_04535 0.20 -2.0
943,228 + CSW01_04535 0.20 -2.9
943,236 - CSW01_04535 0.21 +0.3
943,387 + CSW01_04535 0.45 -0.5
943,387 + CSW01_04535 0.45 -3.4
943,395 - CSW01_04535 0.46 +1.3
943,414 - CSW01_04535 0.49 -3.3
943,445 + CSW01_04535 0.54 -0.8
943,573 + CSW01_04535 0.75 -3.4
943,616 - CSW01_04535 0.82 -2.6
943,683 + -1.3
943,683 + -2.7
943,683 + +0.6
943,683 + -4.1
943,732 - CSW01_04540 0.15 +0.9
943,809 + CSW01_04540 0.41 -3.7
943,817 - CSW01_04540 0.43 +1.7
943,849 - CSW01_04540 0.54 -0.2
944,018 + -2.1
944,026 - -1.3
944,026 - +0.2
944,026 - +1.3
944,031 + +1.0
944,132 + CSW01_04545 0.13 -0.2
944,140 - CSW01_04545 0.14 -1.0
944,233 - CSW01_04545 0.23 +0.9
944,310 + CSW01_04545 0.31 -0.9
944,310 + CSW01_04545 0.31 +1.4
944,318 - CSW01_04545 0.31 +0.5
944,318 - CSW01_04545 0.31 +0.9
944,318 - CSW01_04545 0.31 -1.6
944,371 - CSW01_04545 0.37 +0.7
944,414 + CSW01_04545 0.41 +0.3
944,419 + CSW01_04545 0.41 +1.3
944,421 + CSW01_04545 0.41 +1.7
944,429 - CSW01_04545 0.42 -0.3
944,431 + CSW01_04545 0.42 +0.6
944,431 + CSW01_04545 0.42 -0.9
944,439 - CSW01_04545 0.43 -0.3
944,464 + CSW01_04545 0.45 -0.3
944,464 + CSW01_04545 0.45 -2.7
944,465 - CSW01_04545 0.46 +0.1
944,482 - CSW01_04545 0.47 +2.2
944,563 - CSW01_04545 0.55 +1.0
944,611 + CSW01_04545 0.60 +1.7
944,619 - CSW01_04545 0.60 +0.5
944,726 - CSW01_04545 0.71 -0.2
944,727 - CSW01_04545 0.71 -2.9
944,773 + CSW01_04545 0.75 -3.0
944,773 + CSW01_04545 0.75 +1.0
944,807 + CSW01_04545 0.79 +0.5
944,833 + CSW01_04545 0.81 +0.1
944,843 + CSW01_04545 0.82 +0.2
944,843 + CSW01_04545 0.82 -1.3
944,851 - CSW01_04545 0.83 -1.7
944,851 - CSW01_04545 0.83 +2.0
944,893 + CSW01_04545 0.87 +0.8
944,915 - CSW01_04545 0.89 +2.0

Or see this region's nucleotide sequence