Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04475 and CSW01_04480 are separated by 110 nucleotides CSW01_04480 and CSW01_04485 are separated by 5 nucleotides CSW01_04485 and CSW01_04490 are separated by 102 nucleotides CSW01_04490 and CSW01_04495 are separated by 32 nucleotides CSW01_04495 and CSW01_04500 are separated by 17 nucleotides
CSW01_04475: CSW01_04475 - IS200/IS605 family transposase IS1004, at 934,656 to 935,093
_04475
CSW01_04480: CSW01_04480 - DUF4250 domain-containing protein, at 935,204 to 935,395
_04480
CSW01_04485: CSW01_04485 - hypothetical protein, at 935,401 to 935,604
_04485
CSW01_04490: CSW01_04490 - DUF533 domain-containing protein, at 935,707 to 936,351
_04490
CSW01_04495: CSW01_04495 - hypothetical protein, at 936,384 to 936,575
_04495
CSW01_04500: CSW01_04500 - proline--tRNA ligase, at 936,593 to 938,308
_04500
Position (kb) 935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 935.398 kb on - strand at 935.536 kb on + strand, within CSW01_04485 at 935.588 kb on - strand at 935.588 kb on - strand at 935.613 kb on + strand at 935.679 kb on + strand at 935.726 kb on + strand at 935.915 kb on - strand, within CSW01_04490 at 935.944 kb on + strand, within CSW01_04490 at 935.988 kb on - strand, within CSW01_04490 at 936.121 kb on - strand, within CSW01_04490 at 936.122 kb on + strand, within CSW01_04490 at 936.296 kb on - strand at 936.317 kb on - strand at 936.329 kb on - strand at 936.374 kb on - strand at 936.545 kb on + strand, within CSW01_04495 at 936.553 kb on - strand, within CSW01_04495 at 936.591 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 935,398 - -0.5 935,536 + CSW01_04485 0.66 -0.3 935,588 - +1.0 935,588 - -3.1 935,613 + -0.4 935,679 + +0.3 935,726 + +0.4 935,915 - CSW01_04490 0.32 +0.7 935,944 + CSW01_04490 0.37 +2.0 935,988 - CSW01_04490 0.44 +0.1 936,121 - CSW01_04490 0.64 +0.4 936,122 + CSW01_04490 0.64 +0.3 936,296 - -0.2 936,317 - -2.5 936,329 - +1.1 936,374 - +1.2 936,545 + CSW01_04495 0.84 -0.4 936,553 - CSW01_04495 0.88 +0.4 936,591 + +0.1
Or see this region's nucleotide sequence