Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04410

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04405 and CSW01_04410 are separated by 263 nucleotidesCSW01_04410 and CSW01_04415 are separated by 200 nucleotides CSW01_04405: CSW01_04405 - nucleotide exchange factor GrpE, at 918,296 to 918,898 _04405 CSW01_04410: CSW01_04410 - molecular chaperone DnaK, at 919,162 to 921,069 _04410 CSW01_04415: CSW01_04415 - molecular chaperone DnaJ, at 921,270 to 922,415 _04415 Position (kb) 919 920 921 922Strain fitness (log2 ratio) -3 -2 -1 0 1at 918.261 kb on + strandat 918.261 kb on + strandat 918.279 kb on - strandat 918.909 kb on - strandat 921.072 kb on + strandat 921.132 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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918,261 + +0.4
918,261 + -2.9
918,279 - +0.6
918,909 - -3.2
921,072 + +0.5
921,132 + +0.9

Or see this region's nucleotide sequence