Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04060

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04055 and CSW01_04060 are separated by 79 nucleotidesCSW01_04060 and CSW01_04065 are separated by 366 nucleotides CSW01_04055: CSW01_04055 - alkyl/aryl-sulfatase, at 837,124 to 839,106 _04055 CSW01_04060: CSW01_04060 - alanine:cation symporter family protein, at 839,186 to 840,736 _04060 CSW01_04065: CSW01_04065 - D-amino acid dehydrogenase small subunit, at 841,103 to 842,368 _04065 Position (kb) 839 840 841Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 838.254 kb on + strand, within CSW01_04055at 838.313 kb on + strand, within CSW01_04055at 838.335 kb on - strand, within CSW01_04055at 838.366 kb on - strand, within CSW01_04055at 838.392 kb on - strand, within CSW01_04055at 838.399 kb on - strand, within CSW01_04055at 838.449 kb on - strand, within CSW01_04055at 838.474 kb on + strand, within CSW01_04055at 838.482 kb on - strand, within CSW01_04055at 838.497 kb on + strand, within CSW01_04055at 838.529 kb on - strand, within CSW01_04055at 838.584 kb on - strand, within CSW01_04055at 838.592 kb on - strand, within CSW01_04055at 838.624 kb on - strand, within CSW01_04055at 838.656 kb on + strand, within CSW01_04055at 838.656 kb on + strand, within CSW01_04055at 838.664 kb on - strand, within CSW01_04055at 838.697 kb on - strand, within CSW01_04055at 838.754 kb on + strand, within CSW01_04055at 838.762 kb on - strand, within CSW01_04055at 838.762 kb on - strand, within CSW01_04055at 838.846 kb on - strand, within CSW01_04055at 838.943 kb on + strandat 838.981 kb on + strandat 838.981 kb on + strandat 839.028 kb on - strandat 839.132 kb on + strandat 839.183 kb on + strandat 839.203 kb on + strandat 839.203 kb on + strandat 839.206 kb on - strandat 839.211 kb on - strandat 839.269 kb on - strandat 839.425 kb on + strand, within CSW01_04060at 839.436 kb on + strand, within CSW01_04060at 839.450 kb on - strand, within CSW01_04060at 839.481 kb on + strand, within CSW01_04060at 839.506 kb on + strand, within CSW01_04060at 839.514 kb on - strand, within CSW01_04060at 839.533 kb on - strand, within CSW01_04060at 839.559 kb on - strand, within CSW01_04060at 839.561 kb on + strand, within CSW01_04060at 839.563 kb on - strand, within CSW01_04060at 839.580 kb on + strand, within CSW01_04060at 839.621 kb on - strand, within CSW01_04060at 839.647 kb on - strand, within CSW01_04060at 839.669 kb on - strand, within CSW01_04060at 839.720 kb on + strand, within CSW01_04060at 839.728 kb on - strand, within CSW01_04060at 839.730 kb on + strand, within CSW01_04060at 839.732 kb on + strand, within CSW01_04060at 839.732 kb on + strand, within CSW01_04060at 839.740 kb on - strand, within CSW01_04060at 839.839 kb on + strand, within CSW01_04060at 839.847 kb on - strand, within CSW01_04060at 839.847 kb on - strand, within CSW01_04060at 839.848 kb on - strand, within CSW01_04060at 839.862 kb on - strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.863 kb on + strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.871 kb on - strand, within CSW01_04060at 839.888 kb on + strand, within CSW01_04060at 839.896 kb on - strand, within CSW01_04060at 839.900 kb on + strand, within CSW01_04060at 839.900 kb on + strand, within CSW01_04060at 839.900 kb on + strand, within CSW01_04060at 839.908 kb on - strand, within CSW01_04060at 839.908 kb on - strand, within CSW01_04060at 839.908 kb on - strand, within CSW01_04060at 839.908 kb on - strand, within CSW01_04060at 839.919 kb on + strand, within CSW01_04060at 839.927 kb on - strand, within CSW01_04060at 840.186 kb on - strand, within CSW01_04060at 840.206 kb on + strand, within CSW01_04060at 840.218 kb on + strand, within CSW01_04060at 840.275 kb on - strand, within CSW01_04060at 840.368 kb on + strand, within CSW01_04060at 840.413 kb on - strand, within CSW01_04060at 840.538 kb on - strand, within CSW01_04060at 840.563 kb on + strand, within CSW01_04060at 840.598 kb on - strandat 840.656 kb on + strandat 840.659 kb on - strandat 840.686 kb on - strandat 840.704 kb on - strandat 840.736 kb on - strandat 840.786 kb on + strandat 840.896 kb on + strandat 840.904 kb on - strandat 841.166 kb on + strandat 841.209 kb on + strandat 841.266 kb on - strand, within CSW01_04065at 841.274 kb on - strand, within CSW01_04065at 841.467 kb on + strand, within CSW01_04065at 841.470 kb on - strand, within CSW01_04065at 841.536 kb on - strand, within CSW01_04065at 841.536 kb on - strand, within CSW01_04065at 841.551 kb on + strand, within CSW01_04065at 841.640 kb on + strand, within CSW01_04065at 841.648 kb on - strand, within CSW01_04065at 841.648 kb on - strand, within CSW01_04065at 841.703 kb on - strand, within CSW01_04065

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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838,254 + CSW01_04055 0.57 +1.3
838,313 + CSW01_04055 0.60 -0.0
838,335 - CSW01_04055 0.61 -0.7
838,366 - CSW01_04055 0.63 +0.3
838,392 - CSW01_04055 0.64 +1.4
838,399 - CSW01_04055 0.64 +0.3
838,449 - CSW01_04055 0.67 -1.0
838,474 + CSW01_04055 0.68 +1.2
838,482 - CSW01_04055 0.68 -1.4
838,497 + CSW01_04055 0.69 +0.6
838,529 - CSW01_04055 0.71 +0.7
838,584 - CSW01_04055 0.74 +0.8
838,592 - CSW01_04055 0.74 -0.3
838,624 - CSW01_04055 0.76 +3.1
838,656 + CSW01_04055 0.77 -2.2
838,656 + CSW01_04055 0.77 +0.8
838,664 - CSW01_04055 0.78 -1.9
838,697 - CSW01_04055 0.79 +1.9
838,754 + CSW01_04055 0.82 +0.1
838,762 - CSW01_04055 0.83 -0.4
838,762 - CSW01_04055 0.83 -0.6
838,846 - CSW01_04055 0.87 -0.7
838,943 + -0.8
838,981 + +0.9
838,981 + +0.1
839,028 - -0.0
839,132 + -0.0
839,183 + -1.2
839,203 + +0.4
839,203 + -0.7
839,206 - +0.5
839,211 - +0.7
839,269 - +0.3
839,425 + CSW01_04060 0.15 -3.3
839,436 + CSW01_04060 0.16 +0.4
839,450 - CSW01_04060 0.17 -1.6
839,481 + CSW01_04060 0.19 -3.4
839,506 + CSW01_04060 0.21 +0.4
839,514 - CSW01_04060 0.21 -2.9
839,533 - CSW01_04060 0.22 -3.7
839,559 - CSW01_04060 0.24 -2.6
839,561 + CSW01_04060 0.24 +0.9
839,563 - CSW01_04060 0.24 +0.1
839,580 + CSW01_04060 0.25 +0.8
839,621 - CSW01_04060 0.28 -0.5
839,647 - CSW01_04060 0.30 +1.0
839,669 - CSW01_04060 0.31 -2.3
839,720 + CSW01_04060 0.34 +1.5
839,728 - CSW01_04060 0.35 -0.7
839,730 + CSW01_04060 0.35 +0.1
839,732 + CSW01_04060 0.35 -2.1
839,732 + CSW01_04060 0.35 -2.6
839,740 - CSW01_04060 0.36 +1.6
839,839 + CSW01_04060 0.42 +0.1
839,847 - CSW01_04060 0.43 +0.9
839,847 - CSW01_04060 0.43 +2.2
839,848 - CSW01_04060 0.43 -2.6
839,862 - CSW01_04060 0.44 +1.7
839,863 + CSW01_04060 0.44 +1.0
839,863 + CSW01_04060 0.44 -2.9
839,863 + CSW01_04060 0.44 -3.0
839,863 + CSW01_04060 0.44 -2.1
839,863 + CSW01_04060 0.44 +1.7
839,863 + CSW01_04060 0.44 +0.0
839,863 + CSW01_04060 0.44 -0.1
839,863 + CSW01_04060 0.44 +1.4
839,863 + CSW01_04060 0.44 -3.6
839,863 + CSW01_04060 0.44 +1.1
839,871 - CSW01_04060 0.44 +2.1
839,871 - CSW01_04060 0.44 +0.6
839,871 - CSW01_04060 0.44 -2.5
839,871 - CSW01_04060 0.44 +0.2
839,871 - CSW01_04060 0.44 -0.7
839,871 - CSW01_04060 0.44 -0.0
839,888 + CSW01_04060 0.45 -2.7
839,896 - CSW01_04060 0.46 +0.9
839,900 + CSW01_04060 0.46 +0.6
839,900 + CSW01_04060 0.46 -2.6
839,900 + CSW01_04060 0.46 -3.5
839,908 - CSW01_04060 0.47 +1.1
839,908 - CSW01_04060 0.47 +1.2
839,908 - CSW01_04060 0.47 -0.6
839,908 - CSW01_04060 0.47 -1.9
839,919 + CSW01_04060 0.47 +0.2
839,927 - CSW01_04060 0.48 -1.1
840,186 - CSW01_04060 0.64 +0.1
840,206 + CSW01_04060 0.66 +0.1
840,218 + CSW01_04060 0.67 -1.0
840,275 - CSW01_04060 0.70 -0.2
840,368 + CSW01_04060 0.76 -1.4
840,413 - CSW01_04060 0.79 -0.3
840,538 - CSW01_04060 0.87 +1.8
840,563 + CSW01_04060 0.89 -2.2
840,598 - -2.1
840,656 + -0.4
840,659 - +0.7
840,686 - +0.0
840,704 - -0.7
840,736 - +1.8
840,786 + -0.3
840,896 + +0.0
840,904 - -0.4
841,166 + -0.6
841,209 + -3.2
841,266 - CSW01_04065 0.13 -2.1
841,274 - CSW01_04065 0.14 +0.6
841,467 + CSW01_04065 0.29 -0.3
841,470 - CSW01_04065 0.29 +2.9
841,536 - CSW01_04065 0.34 +0.7
841,536 - CSW01_04065 0.34 -2.5
841,551 + CSW01_04065 0.35 +0.6
841,640 + CSW01_04065 0.42 -1.0
841,648 - CSW01_04065 0.43 +0.8
841,648 - CSW01_04065 0.43 -0.1
841,703 - CSW01_04065 0.47 -2.0

Or see this region's nucleotide sequence