Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04040

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04035 and CSW01_04040 are separated by 116 nucleotidesCSW01_04040 and CSW01_04045 overlap by 70 nucleotidesCSW01_04045 and CSW01_04050 are separated by 9 nucleotides CSW01_04035: CSW01_04035 - Fe(3+)-siderophore ABC transporter permease, at 833,222 to 834,298 _04035 CSW01_04040: CSW01_04040 - ABC transporter ATP-binding protein, at 834,415 to 835,254 _04040 CSW01_04045: CSW01_04045 - vibriobactin biosynthesis 4'-phosphopantetheinyl transferase VibD, at 835,185 to 835,970 _04045 CSW01_04050: CSW01_04050 - LysR family transcriptional regulator, at 835,980 to 836,906 _04050 Position (kb) 834 835 836Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 833.462 kb on + strand, within CSW01_04035at 833.524 kb on - strand, within CSW01_04035at 833.524 kb on - strand, within CSW01_04035at 833.524 kb on - strand, within CSW01_04035at 833.553 kb on + strand, within CSW01_04035at 833.553 kb on + strand, within CSW01_04035at 833.578 kb on + strand, within CSW01_04035at 833.600 kb on - strand, within CSW01_04035at 833.615 kb on - strand, within CSW01_04035at 833.718 kb on + strand, within CSW01_04035at 833.750 kb on - strand, within CSW01_04035at 833.769 kb on + strand, within CSW01_04035at 833.769 kb on + strand, within CSW01_04035at 833.785 kb on + strand, within CSW01_04035at 833.813 kb on + strand, within CSW01_04035at 833.821 kb on - strand, within CSW01_04035at 833.821 kb on - strand, within CSW01_04035at 833.858 kb on + strand, within CSW01_04035at 833.943 kb on + strand, within CSW01_04035at 833.951 kb on - strand, within CSW01_04035at 834.101 kb on - strand, within CSW01_04035at 834.139 kb on + strand, within CSW01_04035at 834.144 kb on + strand, within CSW01_04035at 834.144 kb on + strand, within CSW01_04035at 834.157 kb on - strand, within CSW01_04035at 834.162 kb on - strand, within CSW01_04035at 834.180 kb on - strand, within CSW01_04035at 834.180 kb on - strand, within CSW01_04035at 834.180 kb on - strand, within CSW01_04035at 834.185 kb on - strand, within CSW01_04035at 834.203 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.342 kb on + strandat 834.342 kb on + strandat 834.350 kb on - strandat 834.350 kb on - strandat 834.355 kb on + strandat 834.355 kb on + strandat 834.355 kb on + strandat 834.363 kb on - strandat 834.363 kb on - strandat 834.363 kb on - strandat 834.365 kb on + strandat 834.365 kb on + strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.436 kb on + strandat 834.436 kb on + strandat 834.436 kb on + strandat 834.444 kb on - strandat 834.451 kb on + strandat 834.459 kb on - strandat 834.459 kb on - strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.592 kb on - strand, within CSW01_04040at 834.597 kb on - strand, within CSW01_04040at 834.655 kb on + strand, within CSW01_04040at 834.663 kb on - strand, within CSW01_04040at 834.711 kb on - strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.776 kb on - strand, within CSW01_04040at 834.806 kb on + strand, within CSW01_04040at 834.814 kb on - strand, within CSW01_04040at 834.865 kb on - strand, within CSW01_04040at 834.867 kb on + strand, within CSW01_04040at 834.870 kb on - strand, within CSW01_04040at 834.875 kb on - strand, within CSW01_04040at 834.880 kb on - strand, within CSW01_04040at 834.914 kb on - strand, within CSW01_04040at 834.999 kb on + strand, within CSW01_04040at 835.033 kb on + strand, within CSW01_04040at 835.033 kb on + strand, within CSW01_04040at 835.041 kb on - strand, within CSW01_04040at 835.042 kb on - strand, within CSW01_04040at 835.059 kb on - strand, within CSW01_04040at 835.090 kb on + strand, within CSW01_04040at 835.111 kb on + strand, within CSW01_04040at 835.151 kb on + strand, within CSW01_04040at 835.159 kb on - strand, within CSW01_04040at 835.159 kb on - strand, within CSW01_04040at 835.227 kb on - strandat 835.227 kb on - strandat 835.227 kb on - strandat 835.319 kb on + strand, within CSW01_04045at 835.357 kb on + strand, within CSW01_04045at 835.365 kb on - strand, within CSW01_04045at 835.365 kb on - strand, within CSW01_04045at 835.365 kb on - strand, within CSW01_04045at 835.375 kb on + strand, within CSW01_04045at 835.383 kb on - strand, within CSW01_04045at 835.383 kb on - strand, within CSW01_04045at 835.388 kb on - strand, within CSW01_04045at 835.393 kb on - strand, within CSW01_04045at 835.393 kb on - strand, within CSW01_04045at 835.393 kb on - strand, within CSW01_04045at 835.406 kb on - strand, within CSW01_04045at 835.425 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.467 kb on + strand, within CSW01_04045at 835.474 kb on - strand, within CSW01_04045at 835.475 kb on - strand, within CSW01_04045at 835.516 kb on - strand, within CSW01_04045at 835.516 kb on - strand, within CSW01_04045at 835.516 kb on - strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.577 kb on - strand, within CSW01_04045at 835.577 kb on - strand, within CSW01_04045at 835.579 kb on - strand, within CSW01_04045at 835.579 kb on - strand, within CSW01_04045at 835.579 kb on - strand, within CSW01_04045at 835.586 kb on - strand, within CSW01_04045at 835.594 kb on - strand, within CSW01_04045at 835.631 kb on - strand, within CSW01_04045at 835.650 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.742 kb on + strand, within CSW01_04045at 835.761 kb on + strand, within CSW01_04045at 835.769 kb on + strand, within CSW01_04045at 835.796 kb on + strand, within CSW01_04045at 835.796 kb on + strand, within CSW01_04045at 835.807 kb on - strand, within CSW01_04045at 835.844 kb on + strand, within CSW01_04045at 835.852 kb on + strand, within CSW01_04045at 835.857 kb on + strand, within CSW01_04045at 835.867 kb on + strand, within CSW01_04045at 835.872 kb on - strand, within CSW01_04045at 835.872 kb on - strand, within CSW01_04045at 835.910 kb on - strandat 835.939 kb on - strandat 836.059 kb on - strandat 836.073 kb on + strand, within CSW01_04050at 836.166 kb on - strand, within CSW01_04050at 836.166 kb on - strand, within CSW01_04050

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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833,462 + CSW01_04035 0.22 -0.5
833,524 - CSW01_04035 0.28 -1.2
833,524 - CSW01_04035 0.28 -1.2
833,524 - CSW01_04035 0.28 +1.0
833,553 + CSW01_04035 0.31 +1.3
833,553 + CSW01_04035 0.31 +0.3
833,578 + CSW01_04035 0.33 +1.1
833,600 - CSW01_04035 0.35 +0.3
833,615 - CSW01_04035 0.36 -2.5
833,718 + CSW01_04035 0.46 -0.7
833,750 - CSW01_04035 0.49 -0.8
833,769 + CSW01_04035 0.51 +0.0
833,769 + CSW01_04035 0.51 -2.9
833,785 + CSW01_04035 0.52 -2.5
833,813 + CSW01_04035 0.55 +1.2
833,821 - CSW01_04035 0.56 -2.1
833,821 - CSW01_04035 0.56 +1.0
833,858 + CSW01_04035 0.59 +0.3
833,943 + CSW01_04035 0.67 -0.3
833,951 - CSW01_04035 0.68 +0.0
834,101 - CSW01_04035 0.82 +0.4
834,139 + CSW01_04035 0.85 -0.4
834,144 + CSW01_04035 0.86 -0.1
834,144 + CSW01_04035 0.86 +0.8
834,157 - CSW01_04035 0.87 +0.5
834,162 - CSW01_04035 0.87 +0.7
834,180 - CSW01_04035 0.89 +0.8
834,180 - CSW01_04035 0.89 -0.8
834,180 - CSW01_04035 0.89 +1.0
834,185 - CSW01_04035 0.89 -1.7
834,203 + -0.7
834,210 + +0.0
834,210 + -2.3
834,210 + -2.8
834,210 + +1.1
834,210 + +0.5
834,218 - +0.8
834,218 - -2.1
834,218 - -0.3
834,218 - -2.5
834,342 + -1.8
834,342 + +0.1
834,350 - -1.0
834,350 - +0.3
834,355 + +1.1
834,355 + +0.8
834,355 + -0.5
834,363 - -1.9
834,363 - +1.0
834,363 - +1.4
834,365 + -3.3
834,365 + -0.6
834,373 - +0.6
834,373 - -3.5
834,373 - -0.1
834,373 - +0.0
834,373 - -0.2
834,436 + +0.5
834,436 + +0.3
834,436 + -1.6
834,444 - -1.6
834,451 + -0.8
834,459 - -3.9
834,459 - +0.0
834,474 + +1.0
834,474 + +0.6
834,482 - -0.4
834,482 - -0.4
834,482 - -0.5
834,482 - -1.3
834,482 - -2.2
834,592 - CSW01_04040 0.21 -1.1
834,597 - CSW01_04040 0.22 -1.6
834,655 + CSW01_04040 0.29 -1.1
834,663 - CSW01_04040 0.30 +2.1
834,711 - CSW01_04040 0.35 +1.2
834,737 + CSW01_04040 0.38 -2.8
834,737 + CSW01_04040 0.38 -2.0
834,737 + CSW01_04040 0.38 +0.1
834,737 + CSW01_04040 0.38 -0.0
834,737 + CSW01_04040 0.38 -0.2
834,737 + CSW01_04040 0.38 -1.1
834,745 - CSW01_04040 0.39 -0.6
834,745 - CSW01_04040 0.39 +0.2
834,745 - CSW01_04040 0.39 +1.0
834,745 - CSW01_04040 0.39 +1.7
834,745 - CSW01_04040 0.39 +1.4
834,745 - CSW01_04040 0.39 -0.3
834,745 - CSW01_04040 0.39 -0.3
834,776 - CSW01_04040 0.43 +0.5
834,806 + CSW01_04040 0.47 +3.1
834,814 - CSW01_04040 0.47 +1.0
834,865 - CSW01_04040 0.54 -0.8
834,867 + CSW01_04040 0.54 -1.2
834,870 - CSW01_04040 0.54 -1.1
834,875 - CSW01_04040 0.55 +0.4
834,880 - CSW01_04040 0.55 -3.3
834,914 - CSW01_04040 0.59 +0.4
834,999 + CSW01_04040 0.70 -1.4
835,033 + CSW01_04040 0.74 -3.2
835,033 + CSW01_04040 0.74 -0.3
835,041 - CSW01_04040 0.75 -2.5
835,042 - CSW01_04040 0.75 -3.4
835,059 - CSW01_04040 0.77 -1.4
835,090 + CSW01_04040 0.80 -2.7
835,111 + CSW01_04040 0.83 +0.0
835,151 + CSW01_04040 0.88 -2.8
835,159 - CSW01_04040 0.89 +1.6
835,159 - CSW01_04040 0.89 -0.2
835,227 - +0.9
835,227 - -1.1
835,227 - +0.4
835,319 + CSW01_04045 0.17 +1.7
835,357 + CSW01_04045 0.22 -0.4
835,365 - CSW01_04045 0.23 -0.8
835,365 - CSW01_04045 0.23 +1.8
835,365 - CSW01_04045 0.23 +2.5
835,375 + CSW01_04045 0.24 -0.7
835,383 - CSW01_04045 0.25 +1.8
835,383 - CSW01_04045 0.25 +3.5
835,388 - CSW01_04045 0.26 -2.6
835,393 - CSW01_04045 0.26 -2.0
835,393 - CSW01_04045 0.26 +0.3
835,393 - CSW01_04045 0.26 -1.9
835,406 - CSW01_04045 0.28 +1.5
835,425 + CSW01_04045 0.31 +1.5
835,466 + CSW01_04045 0.36 -0.1
835,466 + CSW01_04045 0.36 +2.3
835,466 + CSW01_04045 0.36 +1.2
835,466 + CSW01_04045 0.36 -0.4
835,467 + CSW01_04045 0.36 +0.9
835,474 - CSW01_04045 0.37 +0.1
835,475 - CSW01_04045 0.37 -1.0
835,516 - CSW01_04045 0.42 +1.6
835,516 - CSW01_04045 0.42 +1.0
835,516 - CSW01_04045 0.42 -1.3
835,571 + CSW01_04045 0.49 -0.3
835,571 + CSW01_04045 0.49 +0.5
835,571 + CSW01_04045 0.49 +0.6
835,571 + CSW01_04045 0.49 +1.1
835,571 + CSW01_04045 0.49 +0.1
835,571 + CSW01_04045 0.49 +1.1
835,577 - CSW01_04045 0.50 +0.6
835,577 - CSW01_04045 0.50 -1.6
835,579 - CSW01_04045 0.50 +0.9
835,579 - CSW01_04045 0.50 +0.2
835,579 - CSW01_04045 0.50 +1.5
835,586 - CSW01_04045 0.51 -1.1
835,594 - CSW01_04045 0.52 -0.3
835,631 - CSW01_04045 0.57 +0.6
835,650 + CSW01_04045 0.59 +1.9
835,662 + CSW01_04045 0.61 +1.4
835,662 + CSW01_04045 0.61 +0.3
835,662 + CSW01_04045 0.61 -2.5
835,662 + CSW01_04045 0.61 +1.4
835,670 - CSW01_04045 0.62 +1.8
835,670 - CSW01_04045 0.62 +1.1
835,670 - CSW01_04045 0.62 +1.2
835,670 - CSW01_04045 0.62 -1.4
835,670 - CSW01_04045 0.62 -3.4
835,670 - CSW01_04045 0.62 -2.3
835,670 - CSW01_04045 0.62 -1.2
835,670 - CSW01_04045 0.62 +0.6
835,670 - CSW01_04045 0.62 -3.1
835,670 - CSW01_04045 0.62 -0.3
835,670 - CSW01_04045 0.62 +0.7
835,670 - CSW01_04045 0.62 +0.2
835,670 - CSW01_04045 0.62 -2.6
835,670 - CSW01_04045 0.62 -1.7
835,670 - CSW01_04045 0.62 +0.8
835,742 + CSW01_04045 0.71 +1.1
835,761 + CSW01_04045 0.73 -0.6
835,769 + CSW01_04045 0.74 +0.9
835,796 + CSW01_04045 0.78 +2.0
835,796 + CSW01_04045 0.78 +0.5
835,807 - CSW01_04045 0.79 +0.7
835,844 + CSW01_04045 0.84 -3.0
835,852 + CSW01_04045 0.85 +1.6
835,857 + CSW01_04045 0.85 -0.5
835,867 + CSW01_04045 0.87 +1.5
835,872 - CSW01_04045 0.87 +1.9
835,872 - CSW01_04045 0.87 -3.3
835,910 - -2.0
835,939 - -2.1
836,059 - +1.4
836,073 + CSW01_04050 0.10 -1.2
836,166 - CSW01_04050 0.20 -0.8
836,166 - CSW01_04050 0.20 +2.6

Or see this region's nucleotide sequence