Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03765

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03755 and CSW01_03760 are separated by 236 nucleotidesCSW01_03760 and CSW01_03765 are separated by 21 nucleotidesCSW01_03765 and CSW01_03770 overlap by 4 nucleotides CSW01_03755: CSW01_03755 - recombination-associated protein RdgC, at 769,862 to 770,776 _03755 CSW01_03760: CSW01_03760 - phosphate regulon transcriptional regulatory protein PhoB, at 771,013 to 771,702 _03760 CSW01_03765: CSW01_03765 - two-component system sensor histidine kinase PhoR, at 771,724 to 773,025 _03765 CSW01_03770: CSW01_03770 - phosphate ABC transporter substrate-binding protein, at 773,022 to 773,999 _03770 Position (kb) 771 772 773 774Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 770.729 kb on - strandat 770.760 kb on - strandat 770.893 kb on - strandat 770.901 kb on - strandat 770.945 kb on + strandat 770.945 kb on + strandat 770.945 kb on + strandat 771.054 kb on - strandat 771.061 kb on + strandat 771.234 kb on - strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.322 kb on + strand, within CSW01_03760at 771.364 kb on - strand, within CSW01_03760at 771.391 kb on + strand, within CSW01_03760at 771.517 kb on + strand, within CSW01_03760at 771.517 kb on + strand, within CSW01_03760at 771.525 kb on - strand, within CSW01_03760at 771.537 kb on - strand, within CSW01_03760at 771.557 kb on - strand, within CSW01_03760at 771.626 kb on + strand, within CSW01_03760at 771.676 kb on + strandat 771.679 kb on - strandat 771.684 kb on - strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.707 kb on + strandat 771.715 kb on - strandat 771.755 kb on + strandat 771.811 kb on + strandat 771.825 kb on + strandat 772.007 kb on + strand, within CSW01_03765at 772.049 kb on - strand, within CSW01_03765at 772.097 kb on - strand, within CSW01_03765at 772.136 kb on + strand, within CSW01_03765at 772.146 kb on + strand, within CSW01_03765at 772.269 kb on + strand, within CSW01_03765at 772.275 kb on + strand, within CSW01_03765at 772.282 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.291 kb on - strand, within CSW01_03765at 772.317 kb on + strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.372 kb on - strand, within CSW01_03765at 772.421 kb on + strand, within CSW01_03765at 772.446 kb on - strand, within CSW01_03765at 772.529 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.612 kb on - strand, within CSW01_03765at 772.666 kb on - strand, within CSW01_03765at 772.666 kb on - strand, within CSW01_03765at 772.735 kb on - strand, within CSW01_03765at 772.764 kb on + strand, within CSW01_03765at 772.828 kb on + strand, within CSW01_03765at 772.828 kb on + strand, within CSW01_03765at 772.836 kb on + strand, within CSW01_03765at 772.836 kb on - strand, within CSW01_03765at 772.838 kb on + strand, within CSW01_03765at 772.838 kb on + strand, within CSW01_03765at 772.872 kb on - strand, within CSW01_03765at 773.056 kb on + strandat 773.138 kb on - strand, within CSW01_03770at 773.184 kb on - strand, within CSW01_03770at 773.212 kb on + strand, within CSW01_03770at 773.215 kb on - strand, within CSW01_03770at 773.232 kb on + strand, within CSW01_03770at 773.240 kb on - strand, within CSW01_03770at 773.287 kb on + strand, within CSW01_03770at 773.340 kb on - strand, within CSW01_03770at 773.365 kb on - strand, within CSW01_03770at 773.464 kb on + strand, within CSW01_03770at 773.471 kb on - strand, within CSW01_03770at 773.473 kb on + strand, within CSW01_03770at 773.516 kb on + strand, within CSW01_03770at 773.525 kb on - strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.603 kb on + strand, within CSW01_03770at 773.611 kb on - strand, within CSW01_03770at 773.695 kb on + strand, within CSW01_03770at 773.707 kb on + strand, within CSW01_03770at 773.761 kb on + strand, within CSW01_03770at 773.797 kb on - strand, within CSW01_03770at 773.815 kb on + strand, within CSW01_03770at 773.815 kb on + strand, within CSW01_03770at 773.823 kb on - strand, within CSW01_03770at 773.909 kb on - strandat 773.914 kb on - strandat 773.963 kb on - strandat 774.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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770,729 - -0.7
770,760 - -1.3
770,893 - +1.4
770,901 - -0.8
770,945 + -0.3
770,945 + -2.3
770,945 + -2.8
771,054 - -1.2
771,061 + +1.6
771,234 - CSW01_03760 0.32 +0.5
771,293 + CSW01_03760 0.41 -2.3
771,293 + CSW01_03760 0.41 -2.9
771,293 + CSW01_03760 0.41 -3.1
771,293 + CSW01_03760 0.41 -2.1
771,301 - CSW01_03760 0.42 +0.3
771,301 - CSW01_03760 0.42 -3.1
771,301 - CSW01_03760 0.42 -0.9
771,301 - CSW01_03760 0.42 -2.4
771,301 - CSW01_03760 0.42 -0.9
771,301 - CSW01_03760 0.42 -3.0
771,301 - CSW01_03760 0.42 -1.7
771,301 - CSW01_03760 0.42 +0.2
771,301 - CSW01_03760 0.42 -1.7
771,322 + CSW01_03760 0.45 -0.9
771,364 - CSW01_03760 0.51 -0.9
771,391 + CSW01_03760 0.55 +1.1
771,517 + CSW01_03760 0.73 -0.7
771,517 + CSW01_03760 0.73 -2.0
771,525 - CSW01_03760 0.74 +0.9
771,537 - CSW01_03760 0.76 -0.9
771,557 - CSW01_03760 0.79 -2.8
771,626 + CSW01_03760 0.89 +1.1
771,676 + -3.2
771,679 - +0.1
771,684 - -1.6
771,697 + -0.6
771,697 + +1.3
771,697 + +0.6
771,697 + -2.6
771,697 + -0.6
771,705 - +0.7
771,705 - +1.4
771,705 - +0.8
771,705 - -3.0
771,705 - +1.9
771,705 - +0.1
771,705 - +1.6
771,705 - +0.9
771,705 - -0.6
771,707 + -1.1
771,715 - -0.9
771,755 + +1.3
771,811 + -3.3
771,825 + +1.4
772,007 + CSW01_03765 0.22 -2.2
772,049 - CSW01_03765 0.25 +0.0
772,097 - CSW01_03765 0.29 +0.4
772,136 + CSW01_03765 0.32 +0.0
772,146 + CSW01_03765 0.32 -1.6
772,269 + CSW01_03765 0.42 -0.9
772,275 + CSW01_03765 0.42 +0.0
772,282 + CSW01_03765 0.43 -4.4
772,290 + CSW01_03765 0.43 +1.2
772,290 + CSW01_03765 0.43 -1.0
772,290 + CSW01_03765 0.43 -0.1
772,291 - CSW01_03765 0.44 -1.1
772,317 + CSW01_03765 0.46 +1.7
772,334 - CSW01_03765 0.47 -4.3
772,334 - CSW01_03765 0.47 -0.2
772,334 - CSW01_03765 0.47 -0.6
772,372 - CSW01_03765 0.50 +1.5
772,421 + CSW01_03765 0.54 -2.0
772,446 - CSW01_03765 0.55 -0.2
772,529 - CSW01_03765 0.62 +0.6
772,553 - CSW01_03765 0.64 +0.4
772,553 - CSW01_03765 0.64 +0.8
772,553 - CSW01_03765 0.64 -2.7
772,553 - CSW01_03765 0.64 -2.5
772,612 - CSW01_03765 0.68 +0.1
772,666 - CSW01_03765 0.72 -1.4
772,666 - CSW01_03765 0.72 -2.4
772,735 - CSW01_03765 0.78 +1.4
772,764 + CSW01_03765 0.80 -0.5
772,828 + CSW01_03765 0.85 +1.3
772,828 + CSW01_03765 0.85 -0.5
772,836 + CSW01_03765 0.85 -3.2
772,836 - CSW01_03765 0.85 -0.6
772,838 + CSW01_03765 0.86 +0.4
772,838 + CSW01_03765 0.86 -2.1
772,872 - CSW01_03765 0.88 +0.3
773,056 + +0.3
773,138 - CSW01_03770 0.12 +1.8
773,184 - CSW01_03770 0.17 +0.7
773,212 + CSW01_03770 0.19 -2.2
773,215 - CSW01_03770 0.20 -2.2
773,232 + CSW01_03770 0.21 -3.1
773,240 - CSW01_03770 0.22 +0.6
773,287 + CSW01_03770 0.27 +0.9
773,340 - CSW01_03770 0.33 -2.2
773,365 - CSW01_03770 0.35 +0.7
773,464 + CSW01_03770 0.45 -0.9
773,471 - CSW01_03770 0.46 +0.1
773,473 + CSW01_03770 0.46 -3.4
773,516 + CSW01_03770 0.51 +0.2
773,525 - CSW01_03770 0.51 -0.4
773,603 + CSW01_03770 0.59 -2.9
773,603 + CSW01_03770 0.59 -1.2
773,603 + CSW01_03770 0.59 +0.0
773,611 - CSW01_03770 0.60 +0.8
773,695 + CSW01_03770 0.69 -0.8
773,707 + CSW01_03770 0.70 +0.7
773,761 + CSW01_03770 0.76 -3.2
773,797 - CSW01_03770 0.79 -3.2
773,815 + CSW01_03770 0.81 +0.5
773,815 + CSW01_03770 0.81 +0.7
773,823 - CSW01_03770 0.82 +1.6
773,909 - -0.0
773,914 - +0.2
773,963 - +1.3
774,021 + +1.0

Or see this region's nucleotide sequence