Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03550

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03545 and CSW01_03550 are separated by 394 nucleotidesCSW01_03550 and CSW01_03555 are separated by 198 nucleotidesCSW01_03555 and CSW01_03560 are separated by 68 nucleotides CSW01_03545: CSW01_03545 - Na/Pi cotransporter family protein, at 721,256 to 722,404 _03545 CSW01_03550: CSW01_03550 - transcriptional activator protein NhaR, at 722,799 to 723,689 _03550 CSW01_03555: CSW01_03555 - transcriptional regulator, at 723,888 to 724,214 _03555 CSW01_03560: CSW01_03560 - 30S ribosomal protein S20, at 724,283 to 724,543 _03560 Position (kb) 722 723 724Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 721.805 kb on - strand, within CSW01_03545at 721.805 kb on - strand, within CSW01_03545at 721.864 kb on + strand, within CSW01_03545at 721.872 kb on - strand, within CSW01_03545at 721.919 kb on + strand, within CSW01_03545at 721.919 kb on + strand, within CSW01_03545at 721.967 kb on + strand, within CSW01_03545at 721.975 kb on - strand, within CSW01_03545at 722.012 kb on + strand, within CSW01_03545at 722.020 kb on - strand, within CSW01_03545at 722.032 kb on + strand, within CSW01_03545at 722.032 kb on + strand, within CSW01_03545at 722.055 kb on + strand, within CSW01_03545at 722.072 kb on + strand, within CSW01_03545at 722.097 kb on + strand, within CSW01_03545at 722.097 kb on + strand, within CSW01_03545at 722.132 kb on + strand, within CSW01_03545at 722.345 kb on + strandat 722.345 kb on + strandat 722.353 kb on - strandat 722.353 kb on - strandat 722.421 kb on - strandat 722.430 kb on - strandat 722.432 kb on - strandat 722.663 kb on + strandat 722.671 kb on - strandat 722.759 kb on + strandat 722.822 kb on + strandat 722.882 kb on + strandat 722.912 kb on + strand, within CSW01_03550at 722.912 kb on + strand, within CSW01_03550at 722.920 kb on - strand, within CSW01_03550at 722.920 kb on - strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.982 kb on + strand, within CSW01_03550at 723.012 kb on + strand, within CSW01_03550at 723.020 kb on - strand, within CSW01_03550at 723.103 kb on - strand, within CSW01_03550at 723.139 kb on + strand, within CSW01_03550at 723.139 kb on + strand, within CSW01_03550at 723.139 kb on + strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.165 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.183 kb on - strand, within CSW01_03550at 723.183 kb on - strand, within CSW01_03550at 723.183 kb on - strand, within CSW01_03550at 723.194 kb on - strand, within CSW01_03550at 723.207 kb on + strand, within CSW01_03550at 723.208 kb on + strand, within CSW01_03550at 723.354 kb on + strand, within CSW01_03550at 723.354 kb on + strand, within CSW01_03550at 723.362 kb on - strand, within CSW01_03550at 723.362 kb on - strand, within CSW01_03550at 723.378 kb on + strand, within CSW01_03550at 723.378 kb on + strand, within CSW01_03550at 723.435 kb on + strand, within CSW01_03550at 723.444 kb on - strand, within CSW01_03550at 723.474 kb on + strand, within CSW01_03550at 723.482 kb on - strand, within CSW01_03550at 723.511 kb on - strand, within CSW01_03550at 723.513 kb on - strand, within CSW01_03550at 723.590 kb on + strand, within CSW01_03550at 723.602 kb on + strandat 723.635 kb on + strandat 723.635 kb on + strandat 724.055 kb on + strand, within CSW01_03555at 724.136 kb on + strand, within CSW01_03555at 724.151 kb on - strand, within CSW01_03555at 724.153 kb on + strand, within CSW01_03555at 724.153 kb on + strand, within CSW01_03555at 724.153 kb on + strand, within CSW01_03555at 724.153 kb on + strand, within CSW01_03555at 724.161 kb on - strand, within CSW01_03555at 724.161 kb on - strand, within CSW01_03555at 724.161 kb on - strand, within CSW01_03555

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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721,805 - CSW01_03545 0.48 -2.3
721,805 - CSW01_03545 0.48 -3.4
721,864 + CSW01_03545 0.53 +1.6
721,872 - CSW01_03545 0.54 +0.8
721,919 + CSW01_03545 0.58 -1.2
721,919 + CSW01_03545 0.58 +0.3
721,967 + CSW01_03545 0.62 +0.1
721,975 - CSW01_03545 0.63 -3.7
722,012 + CSW01_03545 0.66 +0.1
722,020 - CSW01_03545 0.66 +1.4
722,032 + CSW01_03545 0.68 -0.3
722,032 + CSW01_03545 0.68 +0.3
722,055 + CSW01_03545 0.70 -1.5
722,072 + CSW01_03545 0.71 +1.2
722,097 + CSW01_03545 0.73 +1.5
722,097 + CSW01_03545 0.73 +0.4
722,132 + CSW01_03545 0.76 -0.3
722,345 + -2.5
722,345 + +1.5
722,353 - -1.4
722,353 - -4.6
722,421 - -1.0
722,430 - -0.2
722,432 - +0.5
722,663 + -3.0
722,671 - -3.5
722,759 + +0.9
722,822 + -2.0
722,882 + -0.6
722,912 + CSW01_03550 0.13 -0.2
722,912 + CSW01_03550 0.13 +0.2
722,920 - CSW01_03550 0.14 +0.3
722,920 - CSW01_03550 0.14 -2.6
722,968 + CSW01_03550 0.19 -0.2
722,968 + CSW01_03550 0.19 +0.4
722,968 + CSW01_03550 0.19 +1.1
722,968 + CSW01_03550 0.19 -0.9
722,968 + CSW01_03550 0.19 +1.0
722,968 + CSW01_03550 0.19 +1.0
722,968 + CSW01_03550 0.19 +1.1
722,968 + CSW01_03550 0.19 +1.1
722,976 - CSW01_03550 0.20 +0.1
722,976 - CSW01_03550 0.20 +1.2
722,976 - CSW01_03550 0.20 -2.8
722,976 - CSW01_03550 0.20 -0.4
722,976 - CSW01_03550 0.20 +0.4
722,976 - CSW01_03550 0.20 -1.3
722,976 - CSW01_03550 0.20 +1.5
722,976 - CSW01_03550 0.20 +1.7
722,976 - CSW01_03550 0.20 -0.9
722,976 - CSW01_03550 0.20 -2.0
722,976 - CSW01_03550 0.20 +1.1
722,976 - CSW01_03550 0.20 +1.3
722,976 - CSW01_03550 0.20 +0.8
722,982 + CSW01_03550 0.21 -0.5
723,012 + CSW01_03550 0.24 -1.3
723,020 - CSW01_03550 0.25 +0.8
723,103 - CSW01_03550 0.34 +2.1
723,139 + CSW01_03550 0.38 -2.2
723,139 + CSW01_03550 0.38 +0.8
723,139 + CSW01_03550 0.38 -0.0
723,147 - CSW01_03550 0.39 -2.9
723,147 - CSW01_03550 0.39 -1.0
723,147 - CSW01_03550 0.39 +0.1
723,147 - CSW01_03550 0.39 +0.3
723,147 - CSW01_03550 0.39 +0.1
723,147 - CSW01_03550 0.39 +0.1
723,165 + CSW01_03550 0.41 +0.5
723,175 + CSW01_03550 0.42 +2.6
723,175 + CSW01_03550 0.42 +0.7
723,175 + CSW01_03550 0.42 -1.8
723,175 + CSW01_03550 0.42 -0.0
723,183 - CSW01_03550 0.43 +2.3
723,183 - CSW01_03550 0.43 +0.3
723,183 - CSW01_03550 0.43 +0.7
723,194 - CSW01_03550 0.44 -1.1
723,207 + CSW01_03550 0.46 -2.7
723,208 + CSW01_03550 0.46 -2.0
723,354 + CSW01_03550 0.62 +1.8
723,354 + CSW01_03550 0.62 +0.0
723,362 - CSW01_03550 0.63 -0.7
723,362 - CSW01_03550 0.63 -0.2
723,378 + CSW01_03550 0.65 -0.1
723,378 + CSW01_03550 0.65 -0.1
723,435 + CSW01_03550 0.71 -0.3
723,444 - CSW01_03550 0.72 +0.9
723,474 + CSW01_03550 0.76 -3.3
723,482 - CSW01_03550 0.77 -3.1
723,511 - CSW01_03550 0.80 +1.4
723,513 - CSW01_03550 0.80 +0.8
723,590 + CSW01_03550 0.89 -0.2
723,602 + +1.3
723,635 + +0.3
723,635 + -0.2
724,055 + CSW01_03555 0.51 -2.0
724,136 + CSW01_03555 0.76 +0.1
724,151 - CSW01_03555 0.80 -2.0
724,153 + CSW01_03555 0.81 +0.4
724,153 + CSW01_03555 0.81 +0.7
724,153 + CSW01_03555 0.81 +0.8
724,153 + CSW01_03555 0.81 -1.5
724,161 - CSW01_03555 0.83 +0.3
724,161 - CSW01_03555 0.83 +1.0
724,161 - CSW01_03555 0.83 +0.9

Or see this region's nucleotide sequence