Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03520

Experiment: ICP3_phage_0.41_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03515 and CSW01_03520 are separated by 567 nucleotidesCSW01_03520 and CSW01_03525 are separated by 2 nucleotides CSW01_03515: CSW01_03515 - DNA mismatch repair protein MutH, at 714,591 to 715,256 _03515 CSW01_03520: CSW01_03520 - RNA pyrophosphohydrolase, at 715,824 to 716,405 _03520 CSW01_03525: CSW01_03525 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 716,408 to 718,654 _03525 Position (kb) 715 716 717Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 714.848 kb on + strand, within CSW01_03515at 714.856 kb on - strand, within CSW01_03515at 714.856 kb on - strand, within CSW01_03515at 714.907 kb on + strand, within CSW01_03515at 714.924 kb on - strand, within CSW01_03515at 714.953 kb on + strand, within CSW01_03515at 714.960 kb on + strand, within CSW01_03515at 714.975 kb on + strand, within CSW01_03515at 714.983 kb on - strand, within CSW01_03515at 715.038 kb on + strand, within CSW01_03515at 715.046 kb on - strand, within CSW01_03515at 715.145 kb on + strand, within CSW01_03515at 715.153 kb on - strand, within CSW01_03515at 715.153 kb on - strand, within CSW01_03515at 715.158 kb on + strand, within CSW01_03515at 715.166 kb on - strand, within CSW01_03515at 715.199 kb on - strandat 715.289 kb on - strandat 715.320 kb on - strandat 715.358 kb on + strandat 715.402 kb on - strandat 715.440 kb on + strandat 715.491 kb on + strandat 715.491 kb on + strandat 715.491 kb on + strandat 715.821 kb on + strandat 715.821 kb on + strandat 716.064 kb on - strand, within CSW01_03520at 716.271 kb on - strand, within CSW01_03520at 716.400 kb on + strandat 716.400 kb on + strandat 716.400 kb on + strandat 716.408 kb on - strandat 716.408 kb on - strandat 716.419 kb on + strandat 716.433 kb on - strandat 716.433 kb on - strandat 716.494 kb on - strandat 716.514 kb on - strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.515 kb on + strandat 716.516 kb on - strandat 716.517 kb on + strandat 716.520 kb on + strandat 716.520 kb on + strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.523 kb on - strandat 716.528 kb on - strandat 716.551 kb on - strandat 716.584 kb on + strandat 716.592 kb on - strandat 716.656 kb on + strand, within CSW01_03525at 716.656 kb on + strand, within CSW01_03525at 716.672 kb on + strand, within CSW01_03525at 716.752 kb on - strand, within CSW01_03525at 716.780 kb on - strand, within CSW01_03525at 716.834 kb on - strand, within CSW01_03525at 716.937 kb on + strand, within CSW01_03525at 716.967 kb on - strand, within CSW01_03525at 717.011 kb on + strand, within CSW01_03525at 717.014 kb on - strand, within CSW01_03525at 717.019 kb on - strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.159 kb on + strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.167 kb on - strand, within CSW01_03525at 717.272 kb on - strand, within CSW01_03525at 717.288 kb on - strand, within CSW01_03525

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
remove
714,848 + CSW01_03515 0.39 -3.5
714,856 - CSW01_03515 0.40 +1.1
714,856 - CSW01_03515 0.40 +1.0
714,907 + CSW01_03515 0.47 +0.9
714,924 - CSW01_03515 0.50 -0.3
714,953 + CSW01_03515 0.54 -1.9
714,960 + CSW01_03515 0.55 +1.0
714,975 + CSW01_03515 0.58 +2.4
714,983 - CSW01_03515 0.59 -0.1
715,038 + CSW01_03515 0.67 -0.8
715,046 - CSW01_03515 0.68 -1.7
715,145 + CSW01_03515 0.83 +0.3
715,153 - CSW01_03515 0.84 -2.8
715,153 - CSW01_03515 0.84 +1.0
715,158 + CSW01_03515 0.85 -0.0
715,166 - CSW01_03515 0.86 -1.8
715,199 - -0.1
715,289 - -0.1
715,320 - +0.6
715,358 + -4.0
715,402 - +0.7
715,440 + +1.6
715,491 + +1.0
715,491 + +0.6
715,491 + -3.0
715,821 + +1.3
715,821 + +0.4
716,064 - CSW01_03520 0.41 -1.8
716,271 - CSW01_03520 0.77 +1.0
716,400 + +0.0
716,400 + +0.5
716,400 + +0.9
716,408 - -2.4
716,408 - +0.0
716,419 + -0.2
716,433 - +1.2
716,433 - +0.3
716,494 - +0.6
716,514 - -1.0
716,515 + +0.9
716,515 + -0.9
716,515 + -3.7
716,515 + -0.1
716,515 + +1.0
716,515 + +0.8
716,515 + +1.0
716,515 + +0.4
716,516 - +0.7
716,517 + -1.3
716,520 + +0.4
716,520 + +1.0
716,523 - +0.1
716,523 - -0.1
716,523 - -4.5
716,523 - +0.6
716,523 - +0.1
716,523 - +0.7
716,523 - -0.2
716,523 - -0.3
716,523 - +1.2
716,523 - +1.6
716,523 - -1.4
716,528 - +2.1
716,551 - -0.4
716,584 + -0.3
716,592 - -1.2
716,656 + CSW01_03525 0.11 +0.3
716,656 + CSW01_03525 0.11 -4.2
716,672 + CSW01_03525 0.12 -0.5
716,752 - CSW01_03525 0.15 -0.6
716,780 - CSW01_03525 0.17 -3.0
716,834 - CSW01_03525 0.19 +0.3
716,937 + CSW01_03525 0.24 +0.3
716,967 - CSW01_03525 0.25 -0.1
717,011 + CSW01_03525 0.27 -1.2
717,014 - CSW01_03525 0.27 -1.6
717,019 - CSW01_03525 0.27 -3.4
717,159 + CSW01_03525 0.33 +0.4
717,159 + CSW01_03525 0.33 -0.5
717,159 + CSW01_03525 0.33 -3.4
717,159 + CSW01_03525 0.33 -1.6
717,167 - CSW01_03525 0.34 -1.5
717,167 - CSW01_03525 0.34 -1.0
717,167 - CSW01_03525 0.34 -1.5
717,167 - CSW01_03525 0.34 -2.0
717,272 - CSW01_03525 0.38 +0.4
717,288 - CSW01_03525 0.39 +0.1

Or see this region's nucleotide sequence