Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02575 and CSW01_02580 are separated by 415 nucleotides CSW01_02580 and CSW01_02585 are separated by 62 nucleotides
CSW01_02575: CSW01_02575 - pyruvate kinase PykF, at 513,472 to 514,884
_02575
CSW01_02580: CSW01_02580 - DeoR/GlpR transcriptional regulator, at 515,300 to 516,082
_02580
CSW01_02585: CSW01_02585 - glutamine--fructose-6-phosphate aminotransferase, at 516,145 to 517,977
_02585
Position (kb) 515
516
517 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 514.423 kb on - strand, within CSW01_02575 at 514.502 kb on - strand, within CSW01_02575 at 514.938 kb on - strand at 514.978 kb on + strand at 514.986 kb on - strand at 515.087 kb on + strand at 515.087 kb on + strand at 515.087 kb on + strand at 515.087 kb on + strand at 515.088 kb on + strand at 515.088 kb on + strand at 515.090 kb on + strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.095 kb on - strand at 515.108 kb on - strand at 515.382 kb on + strand, within CSW01_02580 at 515.382 kb on + strand, within CSW01_02580 at 515.435 kb on + strand, within CSW01_02580 at 515.435 kb on + strand, within CSW01_02580 at 515.557 kb on + strand, within CSW01_02580 at 515.652 kb on + strand, within CSW01_02580 at 515.660 kb on - strand, within CSW01_02580 at 515.726 kb on + strand, within CSW01_02580 at 515.792 kb on + strand, within CSW01_02580 at 515.792 kb on + strand, within CSW01_02580 at 515.837 kb on - strand, within CSW01_02580 at 515.843 kb on + strand, within CSW01_02580 at 515.938 kb on + strand, within CSW01_02580 at 515.985 kb on + strand, within CSW01_02580 at 515.985 kb on + strand, within CSW01_02580 at 515.993 kb on - strand, within CSW01_02580 at 515.993 kb on - strand, within CSW01_02580 at 516.045 kb on + strand at 516.056 kb on + strand at 516.119 kb on - strand at 516.119 kb on - strand at 516.135 kb on + strand at 516.135 kb on + strand at 516.137 kb on + strand at 516.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 514,423 - CSW01_02575 0.67 -2.7 514,502 - CSW01_02575 0.73 -1.8 514,938 - -0.4 514,978 + -2.5 514,986 - +2.0 515,087 + -3.2 515,087 + -1.0 515,087 + -1.7 515,087 + +0.3 515,088 + -2.8 515,088 + -1.0 515,090 + -2.1 515,095 - +0.8 515,095 - +0.8 515,095 - -1.0 515,095 - +0.7 515,095 - -3.3 515,095 - +0.4 515,095 - -0.2 515,095 - +2.9 515,095 - -0.1 515,095 - +0.3 515,095 - -0.0 515,095 - -3.0 515,095 - -1.3 515,095 - -3.2 515,095 - -0.6 515,095 - +1.1 515,095 - -1.1 515,095 - +1.8 515,108 - +0.3 515,382 + CSW01_02580 0.10 -0.3 515,382 + CSW01_02580 0.10 -0.3 515,435 + CSW01_02580 0.17 -0.9 515,435 + CSW01_02580 0.17 -3.0 515,557 + CSW01_02580 0.33 +0.6 515,652 + CSW01_02580 0.45 +1.3 515,660 - CSW01_02580 0.46 -2.2 515,726 + CSW01_02580 0.54 -0.4 515,792 + CSW01_02580 0.63 -1.7 515,792 + CSW01_02580 0.63 -2.9 515,837 - CSW01_02580 0.69 -2.8 515,843 + CSW01_02580 0.69 -0.8 515,938 + CSW01_02580 0.81 +1.5 515,985 + CSW01_02580 0.87 -0.1 515,985 + CSW01_02580 0.87 -0.2 515,993 - CSW01_02580 0.89 -1.7 515,993 - CSW01_02580 0.89 +1.1 516,045 + +0.7 516,056 + -3.1 516,119 - +2.0 516,119 - +2.1 516,135 + -1.0 516,135 + +0.7 516,137 + +1.8 516,137 + +1.4
Or see this region's nucleotide sequence