Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02395

Experiment: ICP3_phage_0.41_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02375 and CSW01_02380 are separated by 255 nucleotidesCSW01_02380 and CSW01_02385 are separated by 37 nucleotidesCSW01_02385 and CSW01_02390 are separated by 10 nucleotidesCSW01_02390 and CSW01_02395 are separated by 48 nucleotidesCSW01_02395 and CSW01_02400 are separated by 109 nucleotides CSW01_02375: CSW01_02375 - methyl-accepting chemotaxis protein, at 478,034 to 479,659 _02375 CSW01_02380: CSW01_02380 - tRNA-Asn, at 479,915 to 479,990 _02380 CSW01_02385: CSW01_02385 - tRNA-Phe, at 480,028 to 480,103 _02385 CSW01_02390: CSW01_02390 - tRNA-Thr, at 480,114 to 480,189 _02390 CSW01_02395: CSW01_02395 - tRNA-Phe, at 480,238 to 480,313 _02395 CSW01_02400: CSW01_02400 - lytic murein transglycosylase, at 480,423 to 481,550 _02400 Position (kb) 480 481Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 479.298 kb on + strand, within CSW01_02375at 479.339 kb on + strand, within CSW01_02375at 479.339 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.349 kb on + strand, within CSW01_02375at 479.352 kb on - strand, within CSW01_02375at 479.352 kb on - strand, within CSW01_02375at 479.429 kb on + strand, within CSW01_02375at 479.460 kb on + strand, within CSW01_02375at 479.502 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.528 kb on - strandat 479.528 kb on - strandat 479.528 kb on - strandat 479.541 kb on - strandat 479.620 kb on - strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.735 kb on - strandat 479.735 kb on - strandat 479.835 kb on + strandat 479.939 kb on - strand, within CSW01_02380at 479.966 kb on + strand, within CSW01_02380at 480.158 kb on - strand, within CSW01_02390at 480.191 kb on + strandat 480.191 kb on + strandat 480.199 kb on - strandat 480.543 kb on - strand, within CSW01_02400at 480.543 kb on - strand, within CSW01_02400at 480.568 kb on + strand, within CSW01_02400at 480.577 kb on + strand, within CSW01_02400at 480.577 kb on + strand, within CSW01_02400at 480.577 kb on - strand, within CSW01_02400at 480.587 kb on - strand, within CSW01_02400at 480.632 kb on - strand, within CSW01_02400at 480.632 kb on - strand, within CSW01_02400at 480.634 kb on + strand, within CSW01_02400at 480.642 kb on - strand, within CSW01_02400at 480.688 kb on + strand, within CSW01_02400at 480.723 kb on - strand, within CSW01_02400at 480.723 kb on - strand, within CSW01_02400at 480.723 kb on - strand, within CSW01_02400at 480.753 kb on + strand, within CSW01_02400at 480.763 kb on + strand, within CSW01_02400at 480.764 kb on + strand, within CSW01_02400at 480.773 kb on + strand, within CSW01_02400at 480.823 kb on + strand, within CSW01_02400at 480.842 kb on + strand, within CSW01_02400at 480.843 kb on + strand, within CSW01_02400at 480.876 kb on + strand, within CSW01_02400at 480.876 kb on + strand, within CSW01_02400at 480.876 kb on + strand, within CSW01_02400at 480.884 kb on - strand, within CSW01_02400at 480.884 kb on - strand, within CSW01_02400at 480.884 kb on - strand, within CSW01_02400at 480.910 kb on + strand, within CSW01_02400at 480.910 kb on + strand, within CSW01_02400at 480.990 kb on - strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.042 kb on + strand, within CSW01_02400at 481.049 kb on + strand, within CSW01_02400at 481.050 kb on - strand, within CSW01_02400at 481.050 kb on - strand, within CSW01_02400at 481.093 kb on + strand, within CSW01_02400at 481.121 kb on - strand, within CSW01_02400at 481.144 kb on - strand, within CSW01_02400at 481.169 kb on + strand, within CSW01_02400at 481.169 kb on + strand, within CSW01_02400at 481.177 kb on - strand, within CSW01_02400at 481.251 kb on - strand, within CSW01_02400at 481.279 kb on - strand, within CSW01_02400at 481.279 kb on - strand, within CSW01_02400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
remove
479,298 + CSW01_02375 0.78 +0.7
479,339 + CSW01_02375 0.80 -1.3
479,339 + CSW01_02375 0.80 -2.4
479,344 + CSW01_02375 0.81 +0.5
479,344 + CSW01_02375 0.81 -0.2
479,344 + CSW01_02375 0.81 +0.5
479,344 + CSW01_02375 0.81 -0.5
479,349 + CSW01_02375 0.81 -1.7
479,352 - CSW01_02375 0.81 -2.5
479,352 - CSW01_02375 0.81 -0.1
479,429 + CSW01_02375 0.86 +1.6
479,460 + CSW01_02375 0.88 +0.3
479,502 + -1.1
479,520 + +0.4
479,520 + -2.2
479,520 + -3.9
479,520 + -0.4
479,520 + +0.7
479,520 + +1.4
479,520 + +0.2
479,520 + -0.2
479,520 + -0.6
479,520 + +1.9
479,520 + +2.7
479,520 + +1.1
479,520 + -0.0
479,528 - +1.2
479,528 - -0.9
479,528 - -0.2
479,541 - +0.7
479,620 - -3.8
479,680 + +1.0
479,680 + +0.3
479,680 + -1.1
479,680 + +0.9
479,688 - +0.8
479,688 - +1.1
479,688 - +1.5
479,688 - -0.4
479,688 - +0.4
479,688 - -3.5
479,688 - +1.6
479,735 - -0.2
479,735 - -2.3
479,835 + -0.3
479,939 - CSW01_02380 0.32 -0.8
479,966 + CSW01_02380 0.67 -0.4
480,158 - CSW01_02390 0.58 +0.1
480,191 + -0.6
480,191 + -0.8
480,199 - -2.0
480,543 - CSW01_02400 0.11 -0.3
480,543 - CSW01_02400 0.11 +0.3
480,568 + CSW01_02400 0.13 -3.3
480,577 + CSW01_02400 0.14 -3.3
480,577 + CSW01_02400 0.14 -2.4
480,577 - CSW01_02400 0.14 -0.4
480,587 - CSW01_02400 0.15 -0.8
480,632 - CSW01_02400 0.19 -2.4
480,632 - CSW01_02400 0.19 +0.0
480,634 + CSW01_02400 0.19 -1.7
480,642 - CSW01_02400 0.19 -0.1
480,688 + CSW01_02400 0.23 -0.2
480,723 - CSW01_02400 0.27 +1.1
480,723 - CSW01_02400 0.27 -0.0
480,723 - CSW01_02400 0.27 -0.1
480,753 + CSW01_02400 0.29 -2.5
480,763 + CSW01_02400 0.30 -2.3
480,764 + CSW01_02400 0.30 +1.0
480,773 + CSW01_02400 0.31 +1.3
480,823 + CSW01_02400 0.35 +0.2
480,842 + CSW01_02400 0.37 +0.3
480,843 + CSW01_02400 0.37 +0.3
480,876 + CSW01_02400 0.40 +0.7
480,876 + CSW01_02400 0.40 +0.7
480,876 + CSW01_02400 0.40 -0.2
480,884 - CSW01_02400 0.41 +0.8
480,884 - CSW01_02400 0.41 +0.3
480,884 - CSW01_02400 0.41 -1.3
480,910 + CSW01_02400 0.43 -0.3
480,910 + CSW01_02400 0.43 -4.2
480,990 - CSW01_02400 0.50 -3.9
481,042 + CSW01_02400 0.55 -3.8
481,042 + CSW01_02400 0.55 +1.4
481,042 + CSW01_02400 0.55 -3.8
481,042 + CSW01_02400 0.55 +0.2
481,042 + CSW01_02400 0.55 -0.6
481,042 + CSW01_02400 0.55 -0.5
481,042 + CSW01_02400 0.55 -1.7
481,049 + CSW01_02400 0.55 +0.7
481,050 - CSW01_02400 0.56 -2.4
481,050 - CSW01_02400 0.56 +0.7
481,093 + CSW01_02400 0.59 -1.1
481,121 - CSW01_02400 0.62 +0.3
481,144 - CSW01_02400 0.64 -0.6
481,169 + CSW01_02400 0.66 +0.7
481,169 + CSW01_02400 0.66 +1.2
481,177 - CSW01_02400 0.67 -0.7
481,251 - CSW01_02400 0.73 -2.1
481,279 - CSW01_02400 0.76 +0.3
481,279 - CSW01_02400 0.76 +1.1

Or see this region's nucleotide sequence