Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02285 and CSW01_02290 are separated by 20 nucleotides CSW01_02290 and CSW01_02295 are separated by 222 nucleotides CSW01_02295 and CSW01_02300 are separated by 13 nucleotides CSW01_02300 and CSW01_02305 overlap by 13 nucleotides
CSW01_02285: CSW01_02285 - 50S ribosomal protein L21, at 465,190 to 465,501
_02285
CSW01_02290: CSW01_02290 - 50S ribosomal protein L27, at 465,522 to 465,782
_02290
CSW01_02295: CSW01_02295 - GTPase ObgE, at 466,005 to 467,177
_02295
CSW01_02300: CSW01_02300 - hypothetical protein, at 467,191 to 468,060
_02300
CSW01_02305: CSW01_02305 - hypothetical protein, at 468,048 to 468,533
_02305
Position (kb) 466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 465.008 kb on + strand at 465.008 kb on + strand at 465.875 kb on + strand at 465.882 kb on + strand at 465.882 kb on + strand at 465.889 kb on + strand at 465.896 kb on + strand at 465.896 kb on + strand at 467.069 kb on - strand at 467.160 kb on + strand at 467.255 kb on + strand at 467.263 kb on - strand at 467.263 kb on - strand at 467.273 kb on - strand at 467.284 kb on - strand, within CSW01_02300 at 467.344 kb on + strand, within CSW01_02300 at 467.352 kb on - strand, within CSW01_02300 at 467.352 kb on - strand, within CSW01_02300 at 467.464 kb on - strand, within CSW01_02300 at 467.489 kb on + strand, within CSW01_02300 at 467.489 kb on + strand, within CSW01_02300 at 467.489 kb on + strand, within CSW01_02300 at 467.490 kb on + strand, within CSW01_02300 at 467.510 kb on + strand, within CSW01_02300 at 467.594 kb on + strand, within CSW01_02300 at 467.594 kb on + strand, within CSW01_02300 at 467.602 kb on - strand, within CSW01_02300 at 467.624 kb on + strand, within CSW01_02300 at 467.632 kb on - strand, within CSW01_02300 at 467.632 kb on - strand, within CSW01_02300 at 467.668 kb on - strand, within CSW01_02300 at 467.688 kb on - strand, within CSW01_02300 at 467.688 kb on - strand, within CSW01_02300 at 467.704 kb on + strand, within CSW01_02300 at 467.893 kb on + strand, within CSW01_02300 at 467.922 kb on + strand, within CSW01_02300 at 467.943 kb on + strand, within CSW01_02300 at 467.951 kb on - strand, within CSW01_02300 at 468.007 kb on - strand at 468.097 kb on - strand, within CSW01_02305 at 468.174 kb on + strand, within CSW01_02305
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 465,008 + -0.6 465,008 + +0.3 465,875 + +0.2 465,882 + +1.2 465,882 + -3.1 465,889 + +0.8 465,896 + -0.4 465,896 + +0.4 467,069 - -3.1 467,160 + +0.2 467,255 + -0.6 467,263 - +1.3 467,263 - +1.3 467,273 - +0.6 467,284 - CSW01_02300 0.11 +0.7 467,344 + CSW01_02300 0.18 +2.2 467,352 - CSW01_02300 0.19 +0.0 467,352 - CSW01_02300 0.19 +1.6 467,464 - CSW01_02300 0.31 -1.0 467,489 + CSW01_02300 0.34 +2.4 467,489 + CSW01_02300 0.34 -0.5 467,489 + CSW01_02300 0.34 +2.9 467,490 + CSW01_02300 0.34 +1.0 467,510 + CSW01_02300 0.37 -0.4 467,594 + CSW01_02300 0.46 -2.0 467,594 + CSW01_02300 0.46 -0.5 467,602 - CSW01_02300 0.47 +0.5 467,624 + CSW01_02300 0.50 +0.6 467,632 - CSW01_02300 0.51 +1.4 467,632 - CSW01_02300 0.51 -2.7 467,668 - CSW01_02300 0.55 -0.7 467,688 - CSW01_02300 0.57 +0.6 467,688 - CSW01_02300 0.57 -2.4 467,704 + CSW01_02300 0.59 -1.5 467,893 + CSW01_02300 0.81 -1.0 467,922 + CSW01_02300 0.84 +0.2 467,943 + CSW01_02300 0.86 +0.2 467,951 - CSW01_02300 0.87 -0.2 468,007 - -0.1 468,097 - CSW01_02305 0.10 -2.9 468,174 + CSW01_02305 0.26 +2.0
Or see this region's nucleotide sequence