Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02255 and CSW01_02260 overlap by 32 nucleotides CSW01_02260 and CSW01_02265 are separated by 208 nucleotides CSW01_02265 and CSW01_02270 are separated by 327 nucleotides
CSW01_02255: CSW01_02255 - C4-dicarboxylate ABC transporter substrate-binding protein, at 458,894 to 459,880
_02255
CSW01_02260: CSW01_02260 - C4-dicarboxylate ABC transporter substrate-binding protein, at 459,849 to 459,977
_02260
CSW01_02265: CSW01_02265 - arginine repressor, at 460,186 to 460,656
_02265
CSW01_02270: CSW01_02270 - malate dehydrogenase, at 460,984 to 461,919
_02270
Position (kb) 460
461 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 459.240 kb on - strand, within CSW01_02255 at 459.333 kb on - strand, within CSW01_02255 at 459.352 kb on + strand, within CSW01_02255 at 459.360 kb on - strand, within CSW01_02255 at 459.360 kb on - strand, within CSW01_02255 at 459.455 kb on + strand, within CSW01_02255 at 459.535 kb on + strand, within CSW01_02255 at 459.550 kb on - strand, within CSW01_02255 at 459.580 kb on + strand, within CSW01_02255 at 459.667 kb on - strand, within CSW01_02255 at 459.805 kb on - strand at 459.805 kb on - strand at 459.909 kb on + strand, within CSW01_02260 at 459.917 kb on - strand, within CSW01_02260 at 459.966 kb on - strand at 460.113 kb on + strand at 460.182 kb on + strand at 460.217 kb on + strand at 460.225 kb on - strand at 460.225 kb on - strand at 460.225 kb on - strand at 460.225 kb on - strand at 460.225 kb on - strand at 460.225 kb on - strand at 460.333 kb on + strand, within CSW01_02265 at 460.348 kb on + strand, within CSW01_02265 at 460.356 kb on - strand, within CSW01_02265 at 460.358 kb on + strand, within CSW01_02265 at 460.411 kb on - strand, within CSW01_02265 at 460.415 kb on + strand, within CSW01_02265 at 460.435 kb on + strand, within CSW01_02265 at 460.435 kb on + strand, within CSW01_02265 at 460.443 kb on - strand, within CSW01_02265 at 460.453 kb on + strand, within CSW01_02265 at 460.453 kb on + strand, within CSW01_02265 at 460.483 kb on + strand, within CSW01_02265 at 460.491 kb on - strand, within CSW01_02265 at 460.548 kb on - strand, within CSW01_02265 at 460.610 kb on + strand at 460.610 kb on + strand at 460.619 kb on + strand at 460.626 kb on - strand at 460.626 kb on - strand at 460.672 kb on + strand at 460.783 kb on - strand at 460.795 kb on - strand at 460.863 kb on - strand at 460.937 kb on + strand at 460.961 kb on + strand at 461.020 kb on + strand at 461.027 kb on + strand at 461.028 kb on - strand at 461.028 kb on - strand at 461.029 kb on - strand at 461.035 kb on - strand at 461.079 kb on + strand, within CSW01_02270 at 461.079 kb on + strand, within CSW01_02270 at 461.079 kb on + strand, within CSW01_02270 at 461.087 kb on - strand, within CSW01_02270 at 461.140 kb on - strand, within CSW01_02270 at 461.160 kb on - strand, within CSW01_02270 at 461.256 kb on - strand, within CSW01_02270 at 461.309 kb on + strand, within CSW01_02270 at 461.317 kb on - strand, within CSW01_02270 at 461.346 kb on + strand, within CSW01_02270 at 461.444 kb on + strand, within CSW01_02270 at 461.472 kb on - strand, within CSW01_02270 at 461.521 kb on - strand, within CSW01_02270 at 461.589 kb on + strand, within CSW01_02270
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 459,240 - CSW01_02255 0.35 +0.2 459,333 - CSW01_02255 0.44 -1.4 459,352 + CSW01_02255 0.46 +2.8 459,360 - CSW01_02255 0.47 +1.2 459,360 - CSW01_02255 0.47 -1.8 459,455 + CSW01_02255 0.57 +2.8 459,535 + CSW01_02255 0.65 -1.4 459,550 - CSW01_02255 0.66 -0.1 459,580 + CSW01_02255 0.70 +1.2 459,667 - CSW01_02255 0.78 +1.0 459,805 - +0.7 459,805 - +0.6 459,909 + CSW01_02260 0.47 -2.5 459,917 - CSW01_02260 0.53 +0.0 459,966 - -1.0 460,113 + -0.4 460,182 + -0.4 460,217 + +0.3 460,225 - +3.3 460,225 - -1.1 460,225 - +1.4 460,225 - +0.3 460,225 - +0.1 460,225 - -0.8 460,333 + CSW01_02265 0.31 -3.6 460,348 + CSW01_02265 0.34 -2.9 460,356 - CSW01_02265 0.36 -0.8 460,358 + CSW01_02265 0.37 +0.2 460,411 - CSW01_02265 0.48 +0.0 460,415 + CSW01_02265 0.49 +0.1 460,435 + CSW01_02265 0.53 -2.8 460,435 + CSW01_02265 0.53 -0.2 460,443 - CSW01_02265 0.55 -1.5 460,453 + CSW01_02265 0.57 +0.0 460,453 + CSW01_02265 0.57 -3.0 460,483 + CSW01_02265 0.63 -2.4 460,491 - CSW01_02265 0.65 +0.7 460,548 - CSW01_02265 0.77 -0.9 460,610 + -3.2 460,610 + +1.1 460,619 + +0.4 460,626 - +0.6 460,626 - -3.2 460,672 + -0.7 460,783 - -2.4 460,795 - +1.6 460,863 - +1.2 460,937 + -1.3 460,961 + -2.4 461,020 + -0.1 461,027 + -1.9 461,028 - +1.1 461,028 - +1.0 461,029 - -0.3 461,035 - +1.7 461,079 + CSW01_02270 0.10 -0.5 461,079 + CSW01_02270 0.10 +1.3 461,079 + CSW01_02270 0.10 +2.2 461,087 - CSW01_02270 0.11 +0.6 461,140 - CSW01_02270 0.17 -4.2 461,160 - CSW01_02270 0.19 -0.9 461,256 - CSW01_02270 0.29 -1.3 461,309 + CSW01_02270 0.35 +1.3 461,317 - CSW01_02270 0.36 -2.9 461,346 + CSW01_02270 0.39 +0.5 461,444 + CSW01_02270 0.49 -1.3 461,472 - CSW01_02270 0.52 -0.3 461,521 - CSW01_02270 0.57 +2.0 461,589 + CSW01_02270 0.65 -0.4
Or see this region's nucleotide sequence