Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01965 and CSW01_01970 are separated by 202 nucleotides CSW01_01970 and CSW01_01975 are separated by 116 nucleotides CSW01_01975 and CSW01_01980 are separated by 9 nucleotides
CSW01_01965: CSW01_01965 - glucose-6-phosphate isomerase, at 388,627 to 390,279
_01965
CSW01_01970: CSW01_01970 - MBL fold metallo-hydrolase, at 390,482 to 391,660
_01970
CSW01_01975: CSW01_01975 - chemotaxis protein CheX, at 391,777 to 392,238
_01975
CSW01_01980: CSW01_01980 - transcriptional regulator Zur, at 392,248 to 392,715
_01980
Position (kb) 390
391
392 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 389.754 kb on + strand, within CSW01_01965 at 390.015 kb on + strand, within CSW01_01965 at 390.083 kb on - strand, within CSW01_01965 at 390.192 kb on + strand at 390.249 kb on + strand at 390.308 kb on + strand at 390.308 kb on + strand at 390.308 kb on + strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.316 kb on - strand at 390.393 kb on - strand at 390.454 kb on + strand at 390.454 kb on + strand at 390.463 kb on + strand at 390.477 kb on - strand at 390.526 kb on - strand at 390.526 kb on - strand at 390.553 kb on + strand at 390.556 kb on - strand at 390.556 kb on - strand at 390.574 kb on - strand at 390.591 kb on - strand at 390.601 kb on - strand, within CSW01_01970 at 390.614 kb on + strand, within CSW01_01970 at 390.629 kb on - strand, within CSW01_01970 at 390.665 kb on + strand, within CSW01_01970 at 390.665 kb on + strand, within CSW01_01970 at 390.665 kb on + strand, within CSW01_01970 at 390.673 kb on - strand, within CSW01_01970 at 390.694 kb on + strand, within CSW01_01970 at 390.707 kb on - strand, within CSW01_01970 at 390.772 kb on + strand, within CSW01_01970 at 390.794 kb on - strand, within CSW01_01970 at 390.812 kb on + strand, within CSW01_01970 at 390.813 kb on + strand, within CSW01_01970 at 390.829 kb on - strand, within CSW01_01970 at 390.853 kb on + strand, within CSW01_01970 at 390.861 kb on - strand, within CSW01_01970 at 390.960 kb on + strand, within CSW01_01970 at 390.960 kb on + strand, within CSW01_01970 at 390.968 kb on - strand, within CSW01_01970 at 390.970 kb on + strand, within CSW01_01970 at 390.970 kb on + strand, within CSW01_01970 at 390.970 kb on + strand, within CSW01_01970 at 390.970 kb on + strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.978 kb on - strand, within CSW01_01970 at 390.982 kb on + strand, within CSW01_01970 at 390.982 kb on + strand, within CSW01_01970 at 390.990 kb on - strand, within CSW01_01970 at 391.005 kb on + strand, within CSW01_01970 at 391.011 kb on + strand, within CSW01_01970 at 391.013 kb on - strand, within CSW01_01970 at 391.029 kb on - strand, within CSW01_01970 at 391.031 kb on - strand, within CSW01_01970 at 391.051 kb on + strand, within CSW01_01970 at 391.172 kb on + strand, within CSW01_01970 at 391.172 kb on + strand, within CSW01_01970 at 391.270 kb on - strand, within CSW01_01970 at 391.283 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.293 kb on + strand, within CSW01_01970 at 391.301 kb on - strand, within CSW01_01970 at 391.301 kb on - strand, within CSW01_01970 at 391.301 kb on - strand, within CSW01_01970 at 391.321 kb on + strand, within CSW01_01970 at 391.327 kb on + strand, within CSW01_01970 at 391.327 kb on + strand, within CSW01_01970 at 391.329 kb on - strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.373 kb on + strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.381 kb on - strand, within CSW01_01970 at 391.435 kb on - strand, within CSW01_01970 at 391.447 kb on + strand, within CSW01_01970 at 391.482 kb on - strand, within CSW01_01970 at 391.485 kb on + strand, within CSW01_01970 at 391.485 kb on + strand, within CSW01_01970 at 391.493 kb on - strand, within CSW01_01970 at 391.495 kb on + strand, within CSW01_01970 at 391.503 kb on - strand, within CSW01_01970 at 391.520 kb on - strand, within CSW01_01970 at 391.520 kb on - strand, within CSW01_01970 at 391.523 kb on + strand, within CSW01_01970 at 391.529 kb on + strand, within CSW01_01970 at 391.529 kb on + strand, within CSW01_01970 at 391.549 kb on - strand at 391.551 kb on + strand at 391.564 kb on - strand at 391.591 kb on + strand at 391.591 kb on + strand at 391.683 kb on - strand at 391.779 kb on + strand at 391.815 kb on - strand at 391.954 kb on - strand, within CSW01_01975 at 392.001 kb on - strand, within CSW01_01975 at 392.010 kb on - strand, within CSW01_01975 at 392.052 kb on + strand, within CSW01_01975 at 392.052 kb on + strand, within CSW01_01975 at 392.052 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.067 kb on + strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.075 kb on - strand, within CSW01_01975 at 392.101 kb on + strand, within CSW01_01975 at 392.101 kb on + strand, within CSW01_01975 at 392.109 kb on - strand, within CSW01_01975 at 392.109 kb on - strand, within CSW01_01975 at 392.248 kb on - strand at 392.283 kb on + strand at 392.309 kb on + strand, within CSW01_01980 at 392.327 kb on - strand, within CSW01_01980 at 392.329 kb on + strand, within CSW01_01980 at 392.358 kb on + strand, within CSW01_01980 at 392.390 kb on + strand, within CSW01_01980 at 392.400 kb on + strand, within CSW01_01980 at 392.408 kb on - strand, within CSW01_01980 at 392.417 kb on + strand, within CSW01_01980 at 392.423 kb on - strand, within CSW01_01980 at 392.425 kb on + strand, within CSW01_01980 at 392.433 kb on - strand, within CSW01_01980 at 392.462 kb on - strand, within CSW01_01980 at 392.524 kb on - strand, within CSW01_01980 at 392.528 kb on + strand, within CSW01_01980 at 392.528 kb on + strand, within CSW01_01980 at 392.536 kb on - strand, within CSW01_01980 at 392.583 kb on + strand, within CSW01_01980 at 392.583 kb on + strand, within CSW01_01980 at 392.583 kb on + strand, within CSW01_01980 at 392.591 kb on - strand, within CSW01_01980 at 392.593 kb on - strand, within CSW01_01980 at 392.603 kb on + strand, within CSW01_01980 at 392.624 kb on + strand, within CSW01_01980 at 392.624 kb on + strand, within CSW01_01980
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 389,754 + CSW01_01965 0.68 -2.1 390,015 + CSW01_01965 0.84 -2.1 390,083 - CSW01_01965 0.88 -1.6 390,192 + +0.2 390,249 + -0.4 390,308 + +0.5 390,308 + -2.7 390,308 + +1.6 390,316 - +0.3 390,316 - -0.2 390,316 - -2.8 390,316 - +1.1 390,316 - -2.3 390,316 - -2.0 390,316 - -3.7 390,316 - -2.8 390,316 - -2.0 390,393 - +0.3 390,454 + -2.5 390,454 + -2.6 390,463 + +0.9 390,477 - -2.3 390,526 - +1.0 390,526 - -2.4 390,553 + +1.0 390,556 - +1.5 390,556 - +1.8 390,574 - -2.4 390,591 - +0.8 390,601 - CSW01_01970 0.10 +0.6 390,614 + CSW01_01970 0.11 -2.8 390,629 - CSW01_01970 0.12 +0.9 390,665 + CSW01_01970 0.16 -1.3 390,665 + CSW01_01970 0.16 -3.1 390,665 + CSW01_01970 0.16 +1.2 390,673 - CSW01_01970 0.16 -1.1 390,694 + CSW01_01970 0.18 +0.3 390,707 - CSW01_01970 0.19 +0.6 390,772 + CSW01_01970 0.25 +1.0 390,794 - CSW01_01970 0.26 -2.5 390,812 + CSW01_01970 0.28 -0.0 390,813 + CSW01_01970 0.28 +0.6 390,829 - CSW01_01970 0.29 +0.6 390,853 + CSW01_01970 0.31 -4.8 390,861 - CSW01_01970 0.32 +1.2 390,960 + CSW01_01970 0.41 -0.0 390,960 + CSW01_01970 0.41 +0.5 390,968 - CSW01_01970 0.41 -1.7 390,970 + CSW01_01970 0.41 +1.2 390,970 + CSW01_01970 0.41 +1.4 390,970 + CSW01_01970 0.41 +2.2 390,970 + CSW01_01970 0.41 +1.2 390,978 - CSW01_01970 0.42 -0.5 390,978 - CSW01_01970 0.42 +0.7 390,978 - CSW01_01970 0.42 +0.6 390,978 - CSW01_01970 0.42 -1.3 390,978 - CSW01_01970 0.42 +0.7 390,982 + CSW01_01970 0.42 -0.5 390,982 + CSW01_01970 0.42 -1.4 390,990 - CSW01_01970 0.43 -0.2 391,005 + CSW01_01970 0.44 +0.2 391,011 + CSW01_01970 0.45 +1.9 391,013 - CSW01_01970 0.45 -3.2 391,029 - CSW01_01970 0.46 -3.2 391,031 - CSW01_01970 0.47 -2.5 391,051 + CSW01_01970 0.48 +0.4 391,172 + CSW01_01970 0.59 +0.4 391,172 + CSW01_01970 0.59 -1.8 391,270 - CSW01_01970 0.67 +1.4 391,283 + CSW01_01970 0.68 +0.7 391,293 + CSW01_01970 0.69 -1.2 391,293 + CSW01_01970 0.69 -1.0 391,293 + CSW01_01970 0.69 +0.3 391,293 + CSW01_01970 0.69 -2.3 391,293 + CSW01_01970 0.69 +1.2 391,293 + CSW01_01970 0.69 +0.2 391,293 + CSW01_01970 0.69 -3.2 391,301 - CSW01_01970 0.69 -2.2 391,301 - CSW01_01970 0.69 -1.1 391,301 - CSW01_01970 0.69 -0.7 391,321 + CSW01_01970 0.71 -2.3 391,327 + CSW01_01970 0.72 +0.2 391,327 + CSW01_01970 0.72 +1.3 391,329 - CSW01_01970 0.72 +0.3 391,373 + CSW01_01970 0.76 +0.3 391,373 + CSW01_01970 0.76 +0.6 391,373 + CSW01_01970 0.76 -1.1 391,373 + CSW01_01970 0.76 +1.3 391,373 + CSW01_01970 0.76 +0.6 391,381 - CSW01_01970 0.76 +0.7 391,381 - CSW01_01970 0.76 +1.8 391,381 - CSW01_01970 0.76 +1.6 391,381 - CSW01_01970 0.76 -0.5 391,381 - CSW01_01970 0.76 -1.9 391,381 - CSW01_01970 0.76 -0.2 391,381 - CSW01_01970 0.76 +0.1 391,435 - CSW01_01970 0.81 -1.1 391,447 + CSW01_01970 0.82 +0.1 391,482 - CSW01_01970 0.85 -1.8 391,485 + CSW01_01970 0.85 +2.1 391,485 + CSW01_01970 0.85 -0.2 391,493 - CSW01_01970 0.86 -0.3 391,495 + CSW01_01970 0.86 +0.6 391,503 - CSW01_01970 0.87 -0.3 391,520 - CSW01_01970 0.88 +0.4 391,520 - CSW01_01970 0.88 +0.2 391,523 + CSW01_01970 0.88 +0.3 391,529 + CSW01_01970 0.89 +1.7 391,529 + CSW01_01970 0.89 +0.9 391,549 - +1.4 391,551 + +0.8 391,564 - -3.2 391,591 + +1.3 391,591 + +0.1 391,683 - -3.9 391,779 + -0.3 391,815 - +0.6 391,954 - CSW01_01975 0.38 -3.1 392,001 - CSW01_01975 0.48 +1.5 392,010 - CSW01_01975 0.50 -0.3 392,052 + CSW01_01975 0.60 +0.1 392,052 + CSW01_01975 0.60 +0.2 392,052 + CSW01_01975 0.60 -3.3 392,067 + CSW01_01975 0.63 -0.1 392,067 + CSW01_01975 0.63 -0.5 392,067 + CSW01_01975 0.63 +0.2 392,067 + CSW01_01975 0.63 -0.1 392,067 + CSW01_01975 0.63 -3.9 392,067 + CSW01_01975 0.63 +0.7 392,067 + CSW01_01975 0.63 +0.5 392,067 + CSW01_01975 0.63 +0.5 392,067 + CSW01_01975 0.63 -0.1 392,067 + CSW01_01975 0.63 -0.9 392,067 + CSW01_01975 0.63 -0.2 392,067 + CSW01_01975 0.63 -0.2 392,067 + CSW01_01975 0.63 +0.2 392,067 + CSW01_01975 0.63 -3.9 392,067 + CSW01_01975 0.63 +0.3 392,075 - CSW01_01975 0.65 +0.5 392,075 - CSW01_01975 0.65 +1.4 392,075 - CSW01_01975 0.65 +1.7 392,075 - CSW01_01975 0.65 +0.7 392,075 - CSW01_01975 0.65 +1.1 392,075 - CSW01_01975 0.65 -1.9 392,075 - CSW01_01975 0.65 +1.5 392,075 - CSW01_01975 0.65 -0.5 392,075 - CSW01_01975 0.65 -0.2 392,075 - CSW01_01975 0.65 +1.4 392,075 - CSW01_01975 0.65 -3.6 392,075 - CSW01_01975 0.65 -1.0 392,075 - CSW01_01975 0.65 +0.4 392,101 + CSW01_01975 0.70 +1.4 392,101 + CSW01_01975 0.70 +0.6 392,109 - CSW01_01975 0.72 +0.8 392,109 - CSW01_01975 0.72 -2.4 392,248 - +0.9 392,283 + -3.1 392,309 + CSW01_01980 0.13 -4.4 392,327 - CSW01_01980 0.17 +0.2 392,329 + CSW01_01980 0.17 -1.5 392,358 + CSW01_01980 0.24 -2.8 392,390 + CSW01_01980 0.30 +0.9 392,400 + CSW01_01980 0.32 -0.9 392,408 - CSW01_01980 0.34 +1.2 392,417 + CSW01_01980 0.36 -3.2 392,423 - CSW01_01980 0.37 +0.6 392,425 + CSW01_01980 0.38 -2.9 392,433 - CSW01_01980 0.40 -0.2 392,462 - CSW01_01980 0.46 +0.4 392,524 - CSW01_01980 0.59 -2.0 392,528 + CSW01_01980 0.60 -0.4 392,528 + CSW01_01980 0.60 -1.5 392,536 - CSW01_01980 0.62 -1.2 392,583 + CSW01_01980 0.72 +0.6 392,583 + CSW01_01980 0.72 -1.2 392,583 + CSW01_01980 0.72 -0.1 392,591 - CSW01_01980 0.73 -3.8 392,593 - CSW01_01980 0.74 -2.2 392,603 + CSW01_01980 0.76 -2.6 392,624 + CSW01_01980 0.80 +0.6 392,624 + CSW01_01980 0.80 -2.6
Or see this region's nucleotide sequence