Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01530 and CSW01_01535 overlap by 46 nucleotides CSW01_01535 and CSW01_01540 are separated by 98 nucleotides
CSW01_01530: CSW01_01530 - cyclic nucleotide-binding protein, at 306,651 to 308,474
_01530
CSW01_01535: CSW01_01535 - hypothetical protein, at 308,429 to 308,635
_01535
CSW01_01540: CSW01_01540 - 3-phenylpropionate MFS transporter, at 308,734 to 309,924
_01540
Position (kb) 308
309 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 307.429 kb on + strand, within CSW01_01530 at 307.429 kb on + strand, within CSW01_01530 at 307.429 kb on + strand, within CSW01_01530 at 307.432 kb on - strand, within CSW01_01530 at 307.432 kb on - strand, within CSW01_01530 at 307.432 kb on - strand, within CSW01_01530 at 307.432 kb on - strand, within CSW01_01530 at 307.432 kb on - strand, within CSW01_01530 at 307.432 kb on - strand, within CSW01_01530 at 307.432 kb on - strand, within CSW01_01530 at 307.432 kb on - strand, within CSW01_01530 at 307.432 kb on - strand, within CSW01_01530 at 307.437 kb on - strand, within CSW01_01530 at 307.552 kb on - strand, within CSW01_01530 at 307.607 kb on - strand, within CSW01_01530 at 307.642 kb on - strand, within CSW01_01530 at 307.661 kb on + strand, within CSW01_01530 at 307.677 kb on + strand, within CSW01_01530 at 307.711 kb on - strand, within CSW01_01530 at 307.715 kb on - strand, within CSW01_01530 at 307.753 kb on - strand, within CSW01_01530 at 307.768 kb on + strand, within CSW01_01530 at 307.838 kb on + strand, within CSW01_01530 at 307.851 kb on - strand, within CSW01_01530 at 307.882 kb on + strand, within CSW01_01530 at 307.888 kb on + strand, within CSW01_01530 at 307.896 kb on - strand, within CSW01_01530 at 307.910 kb on + strand, within CSW01_01530 at 307.931 kb on - strand, within CSW01_01530 at 307.955 kb on + strand, within CSW01_01530 at 307.959 kb on + strand, within CSW01_01530 at 307.963 kb on - strand, within CSW01_01530 at 307.967 kb on + strand, within CSW01_01530 at 307.974 kb on + strand, within CSW01_01530 at 307.979 kb on + strand, within CSW01_01530 at 308.032 kb on + strand, within CSW01_01530 at 308.032 kb on + strand, within CSW01_01530 at 308.040 kb on - strand, within CSW01_01530 at 308.077 kb on + strand, within CSW01_01530 at 308.141 kb on + strand, within CSW01_01530 at 308.190 kb on - strand, within CSW01_01530 at 308.213 kb on - strand, within CSW01_01530 at 308.213 kb on - strand, within CSW01_01530 at 308.255 kb on - strand, within CSW01_01530 at 308.262 kb on + strand, within CSW01_01530 at 308.272 kb on + strand, within CSW01_01530 at 308.279 kb on + strand, within CSW01_01530 at 308.279 kb on + strand, within CSW01_01530 at 308.301 kb on - strand at 308.311 kb on - strand at 308.311 kb on - strand at 308.328 kb on + strand at 308.346 kb on - strand at 308.346 kb on - strand at 308.354 kb on - strand at 308.354 kb on - strand at 308.358 kb on + strand at 308.358 kb on + strand at 308.364 kb on - strand at 308.383 kb on - strand at 308.391 kb on + strand at 308.391 kb on + strand at 308.399 kb on - strand at 308.399 kb on - strand at 308.406 kb on + strand at 308.409 kb on - strand at 308.425 kb on + strand at 308.425 kb on + strand at 308.433 kb on - strand at 308.433 kb on - strand at 308.433 kb on - strand at 308.433 kb on - strand at 308.436 kb on + strand at 308.499 kb on + strand, within CSW01_01535 at 308.499 kb on + strand, within CSW01_01535 at 308.540 kb on + strand, within CSW01_01535 at 308.548 kb on - strand, within CSW01_01535 at 308.548 kb on - strand, within CSW01_01535 at 308.548 kb on - strand, within CSW01_01535 at 308.553 kb on - strand, within CSW01_01535 at 308.579 kb on + strand, within CSW01_01535 at 308.590 kb on - strand, within CSW01_01535 at 308.687 kb on + strand at 308.695 kb on - strand at 308.702 kb on + strand at 308.825 kb on + strand at 308.825 kb on + strand at 308.825 kb on + strand at 308.861 kb on - strand, within CSW01_01540 at 308.862 kb on - strand, within CSW01_01540 at 308.872 kb on + strand, within CSW01_01540 at 308.879 kb on + strand, within CSW01_01540 at 308.880 kb on - strand, within CSW01_01540 at 308.897 kb on - strand, within CSW01_01540 at 308.930 kb on + strand, within CSW01_01540 at 308.940 kb on + strand, within CSW01_01540 at 308.955 kb on + strand, within CSW01_01540 at 308.969 kb on - strand, within CSW01_01540 at 309.041 kb on - strand, within CSW01_01540 at 309.043 kb on - strand, within CSW01_01540 at 309.043 kb on - strand, within CSW01_01540 at 309.053 kb on - strand, within CSW01_01540 at 309.057 kb on + strand, within CSW01_01540 at 309.057 kb on - strand, within CSW01_01540 at 309.070 kb on - strand, within CSW01_01540 at 309.096 kb on + strand, within CSW01_01540 at 309.096 kb on + strand, within CSW01_01540 at 309.144 kb on - strand, within CSW01_01540 at 309.226 kb on + strand, within CSW01_01540 at 309.231 kb on + strand, within CSW01_01540 at 309.239 kb on - strand, within CSW01_01540 at 309.269 kb on + strand, within CSW01_01540 at 309.269 kb on + strand, within CSW01_01540 at 309.277 kb on - strand, within CSW01_01540 at 309.277 kb on - strand, within CSW01_01540 at 309.300 kb on + strand, within CSW01_01540 at 309.302 kb on - strand, within CSW01_01540 at 309.302 kb on - strand, within CSW01_01540 at 309.304 kb on + strand, within CSW01_01540 at 309.314 kb on + strand, within CSW01_01540 at 309.330 kb on + strand, within CSW01_01540 at 309.338 kb on - strand, within CSW01_01540 at 309.379 kb on + strand, within CSW01_01540 at 309.382 kb on - strand, within CSW01_01540 at 309.399 kb on + strand, within CSW01_01540 at 309.399 kb on + strand, within CSW01_01540 at 309.407 kb on - strand, within CSW01_01540 at 309.407 kb on - strand, within CSW01_01540 at 309.470 kb on + strand, within CSW01_01540 at 309.470 kb on + strand, within CSW01_01540 at 309.470 kb on + strand, within CSW01_01540 at 309.470 kb on + strand, within CSW01_01540 at 309.478 kb on - strand, within CSW01_01540 at 309.478 kb on - strand, within CSW01_01540 at 309.490 kb on + strand, within CSW01_01540 at 309.513 kb on + strand, within CSW01_01540 at 309.513 kb on + strand, within CSW01_01540 at 309.521 kb on - strand, within CSW01_01540 at 309.521 kb on - strand, within CSW01_01540 at 309.526 kb on + strand, within CSW01_01540 at 309.546 kb on + strand, within CSW01_01540 at 309.583 kb on + strand, within CSW01_01540 at 309.583 kb on + strand, within CSW01_01540 at 309.583 kb on + strand, within CSW01_01540 at 309.590 kb on - strand, within CSW01_01540 at 309.607 kb on + strand, within CSW01_01540 at 309.607 kb on + strand, within CSW01_01540 at 309.607 kb on + strand, within CSW01_01540 at 309.615 kb on - strand, within CSW01_01540 at 309.615 kb on - strand, within CSW01_01540 at 309.615 kb on - strand, within CSW01_01540
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 307,429 + CSW01_01530 0.43 +0.1 307,429 + CSW01_01530 0.43 +0.3 307,429 + CSW01_01530 0.43 +0.3 307,432 - CSW01_01530 0.43 +1.5 307,432 - CSW01_01530 0.43 +0.4 307,432 - CSW01_01530 0.43 +1.4 307,432 - CSW01_01530 0.43 +0.9 307,432 - CSW01_01530 0.43 -1.7 307,432 - CSW01_01530 0.43 -4.1 307,432 - CSW01_01530 0.43 +1.5 307,432 - CSW01_01530 0.43 -2.0 307,432 - CSW01_01530 0.43 +0.6 307,437 - CSW01_01530 0.43 -0.2 307,552 - CSW01_01530 0.49 +3.3 307,607 - CSW01_01530 0.52 +1.1 307,642 - CSW01_01530 0.54 +0.6 307,661 + CSW01_01530 0.55 +0.3 307,677 + CSW01_01530 0.56 -1.2 307,711 - CSW01_01530 0.58 +0.9 307,715 - CSW01_01530 0.58 +0.9 307,753 - CSW01_01530 0.60 +0.8 307,768 + CSW01_01530 0.61 +1.7 307,838 + CSW01_01530 0.65 +0.2 307,851 - CSW01_01530 0.66 +1.5 307,882 + CSW01_01530 0.67 +1.0 307,888 + CSW01_01530 0.68 +0.2 307,896 - CSW01_01530 0.68 -0.2 307,910 + CSW01_01530 0.69 +0.9 307,931 - CSW01_01530 0.70 -1.8 307,955 + CSW01_01530 0.71 -0.6 307,959 + CSW01_01530 0.72 +1.7 307,963 - CSW01_01530 0.72 +2.4 307,967 + CSW01_01530 0.72 +0.2 307,974 + CSW01_01530 0.73 -0.4 307,979 + CSW01_01530 0.73 -2.1 308,032 + CSW01_01530 0.76 -5.3 308,032 + CSW01_01530 0.76 -0.2 308,040 - CSW01_01530 0.76 -3.6 308,077 + CSW01_01530 0.78 -0.7 308,141 + CSW01_01530 0.82 +1.5 308,190 - CSW01_01530 0.84 -2.8 308,213 - CSW01_01530 0.86 -3.9 308,213 - CSW01_01530 0.86 +0.9 308,255 - CSW01_01530 0.88 +0.4 308,262 + CSW01_01530 0.88 -0.7 308,272 + CSW01_01530 0.89 -0.2 308,279 + CSW01_01530 0.89 -4.6 308,279 + CSW01_01530 0.89 -0.3 308,301 - -3.8 308,311 - +0.6 308,311 - +1.9 308,328 + +1.6 308,346 - +1.7 308,346 - -0.0 308,354 - +1.5 308,354 - -0.5 308,358 + -3.8 308,358 + -1.4 308,364 - +1.3 308,383 - -2.5 308,391 + -0.5 308,391 + -1.5 308,399 - +1.6 308,399 - +0.3 308,406 + +0.5 308,409 - -3.0 308,425 + -3.7 308,425 + +1.1 308,433 - -1.8 308,433 - +1.0 308,433 - -2.0 308,433 - -1.1 308,436 + +2.0 308,499 + CSW01_01535 0.34 -0.1 308,499 + CSW01_01535 0.34 -1.2 308,540 + CSW01_01535 0.54 -1.4 308,548 - CSW01_01535 0.57 -0.4 308,548 - CSW01_01535 0.57 +0.3 308,548 - CSW01_01535 0.57 -1.4 308,553 - CSW01_01535 0.60 +0.5 308,579 + CSW01_01535 0.72 +0.3 308,590 - CSW01_01535 0.78 -3.6 308,687 + -0.3 308,695 - +1.2 308,702 + -1.5 308,825 + +0.4 308,825 + -0.4 308,825 + -0.2 308,861 - CSW01_01540 0.11 +0.6 308,862 - CSW01_01540 0.11 +1.0 308,872 + CSW01_01540 0.12 +0.3 308,879 + CSW01_01540 0.12 -1.5 308,880 - CSW01_01540 0.12 -0.3 308,897 - CSW01_01540 0.14 -2.0 308,930 + CSW01_01540 0.16 +1.9 308,940 + CSW01_01540 0.17 -1.5 308,955 + CSW01_01540 0.19 +1.5 308,969 - CSW01_01540 0.20 +1.4 309,041 - CSW01_01540 0.26 +0.1 309,043 - CSW01_01540 0.26 -0.5 309,043 - CSW01_01540 0.26 -2.7 309,053 - CSW01_01540 0.27 +0.6 309,057 + CSW01_01540 0.27 +2.0 309,057 - CSW01_01540 0.27 +0.6 309,070 - CSW01_01540 0.28 +0.3 309,096 + CSW01_01540 0.30 -0.8 309,096 + CSW01_01540 0.30 -1.3 309,144 - CSW01_01540 0.34 -2.8 309,226 + CSW01_01540 0.41 +1.3 309,231 + CSW01_01540 0.42 +1.4 309,239 - CSW01_01540 0.42 -1.2 309,269 + CSW01_01540 0.45 +0.3 309,269 + CSW01_01540 0.45 +0.2 309,277 - CSW01_01540 0.46 +0.8 309,277 - CSW01_01540 0.46 -0.6 309,300 + CSW01_01540 0.48 -1.5 309,302 - CSW01_01540 0.48 +1.0 309,302 - CSW01_01540 0.48 +0.2 309,304 + CSW01_01540 0.48 -0.2 309,314 + CSW01_01540 0.49 -3.3 309,330 + CSW01_01540 0.50 +0.9 309,338 - CSW01_01540 0.51 -2.7 309,379 + CSW01_01540 0.54 -3.7 309,382 - CSW01_01540 0.54 -2.0 309,399 + CSW01_01540 0.56 -0.2 309,399 + CSW01_01540 0.56 +1.1 309,407 - CSW01_01540 0.57 +1.0 309,407 - CSW01_01540 0.57 +0.7 309,470 + CSW01_01540 0.62 +0.7 309,470 + CSW01_01540 0.62 -2.6 309,470 + CSW01_01540 0.62 +0.6 309,470 + CSW01_01540 0.62 -2.0 309,478 - CSW01_01540 0.62 +0.3 309,478 - CSW01_01540 0.62 -0.1 309,490 + CSW01_01540 0.63 +0.5 309,513 + CSW01_01540 0.65 +0.7 309,513 + CSW01_01540 0.65 +0.8 309,521 - CSW01_01540 0.66 -4.1 309,521 - CSW01_01540 0.66 -3.3 309,526 + CSW01_01540 0.66 -0.1 309,546 + CSW01_01540 0.68 -0.6 309,583 + CSW01_01540 0.71 -0.4 309,583 + CSW01_01540 0.71 +1.0 309,583 + CSW01_01540 0.71 +0.1 309,590 - CSW01_01540 0.72 -1.0 309,607 + CSW01_01540 0.73 -2.4 309,607 + CSW01_01540 0.73 +1.5 309,607 + CSW01_01540 0.73 -1.0 309,615 - CSW01_01540 0.74 +0.4 309,615 - CSW01_01540 0.74 -0.3 309,615 - CSW01_01540 0.74 -3.0
Or see this region's nucleotide sequence