Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01025 and CSW01_01030 are separated by 74 nucleotides CSW01_01030 and CSW01_01035 are separated by 147 nucleotides
CSW01_01025: CSW01_01025 - LysE family translocator, at 197,131 to 197,799
_01025
CSW01_01030: CSW01_01030 - AraC family transcriptional regulator, at 197,874 to 198,686
_01030
CSW01_01035: CSW01_01035 - gamma-glutamyltransferase, at 198,834 to 200,600
_01035
Position (kb) 197
198
199 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 196.887 kb on + strand at 196.894 kb on + strand at 196.895 kb on - strand at 196.904 kb on + strand at 196.940 kb on + strand at 196.942 kb on - strand at 197.137 kb on - strand at 197.154 kb on - strand at 197.154 kb on - strand at 197.197 kb on + strand at 197.205 kb on - strand, within CSW01_01025 at 197.205 kb on - strand, within CSW01_01025 at 197.205 kb on - strand, within CSW01_01025 at 197.205 kb on - strand, within CSW01_01025 at 197.218 kb on - strand, within CSW01_01025 at 197.219 kb on - strand, within CSW01_01025 at 197.259 kb on + strand, within CSW01_01025 at 197.304 kb on + strand, within CSW01_01025 at 197.312 kb on - strand, within CSW01_01025 at 197.312 kb on - strand, within CSW01_01025 at 197.313 kb on - strand, within CSW01_01025 at 197.338 kb on - strand, within CSW01_01025 at 197.338 kb on - strand, within CSW01_01025 at 197.349 kb on - strand, within CSW01_01025 at 197.373 kb on - strand, within CSW01_01025 at 197.380 kb on - strand, within CSW01_01025 at 197.471 kb on - strand, within CSW01_01025 at 197.472 kb on + strand, within CSW01_01025 at 197.472 kb on + strand, within CSW01_01025 at 197.472 kb on + strand, within CSW01_01025 at 197.472 kb on + strand, within CSW01_01025 at 197.472 kb on + strand, within CSW01_01025 at 197.475 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.480 kb on - strand, within CSW01_01025 at 197.485 kb on - strand, within CSW01_01025 at 197.492 kb on + strand, within CSW01_01025 at 197.492 kb on + strand, within CSW01_01025 at 197.513 kb on + strand, within CSW01_01025 at 197.536 kb on - strand, within CSW01_01025 at 197.548 kb on - strand, within CSW01_01025 at 197.566 kb on - strand, within CSW01_01025 at 197.576 kb on + strand, within CSW01_01025 at 197.693 kb on - strand, within CSW01_01025 at 197.700 kb on + strand, within CSW01_01025 at 197.700 kb on + strand, within CSW01_01025 at 197.707 kb on + strand, within CSW01_01025 at 197.708 kb on - strand, within CSW01_01025 at 197.715 kb on - strand, within CSW01_01025 at 197.743 kb on + strand at 197.767 kb on + strand at 197.775 kb on - strand at 197.776 kb on + strand at 197.889 kb on + strand at 197.899 kb on + strand at 197.918 kb on + strand at 197.934 kb on + strand at 197.967 kb on + strand, within CSW01_01030 at 198.002 kb on + strand, within CSW01_01030 at 198.014 kb on + strand, within CSW01_01030 at 198.014 kb on + strand, within CSW01_01030 at 198.027 kb on - strand, within CSW01_01030 at 198.057 kb on + strand, within CSW01_01030 at 198.065 kb on - strand, within CSW01_01030 at 198.160 kb on + strand, within CSW01_01030 at 198.160 kb on + strand, within CSW01_01030 at 198.168 kb on - strand, within CSW01_01030 at 198.178 kb on - strand, within CSW01_01030 at 198.194 kb on + strand, within CSW01_01030 at 198.194 kb on + strand, within CSW01_01030 at 198.202 kb on - strand, within CSW01_01030 at 198.202 kb on - strand, within CSW01_01030 at 198.202 kb on - strand, within CSW01_01030 at 198.204 kb on + strand, within CSW01_01030 at 198.209 kb on + strand, within CSW01_01030 at 198.209 kb on + strand, within CSW01_01030 at 198.239 kb on + strand, within CSW01_01030 at 198.239 kb on + strand, within CSW01_01030 at 198.239 kb on + strand, within CSW01_01030 at 198.239 kb on + strand, within CSW01_01030 at 198.246 kb on + strand, within CSW01_01030 at 198.278 kb on + strand, within CSW01_01030 at 198.278 kb on + strand, within CSW01_01030 at 198.286 kb on - strand, within CSW01_01030 at 198.314 kb on + strand, within CSW01_01030 at 198.330 kb on - strand, within CSW01_01030 at 198.330 kb on - strand, within CSW01_01030 at 198.356 kb on + strand, within CSW01_01030 at 198.356 kb on + strand, within CSW01_01030 at 198.356 kb on + strand, within CSW01_01030 at 198.364 kb on - strand, within CSW01_01030 at 198.364 kb on - strand, within CSW01_01030 at 198.364 kb on - strand, within CSW01_01030 at 198.364 kb on - strand, within CSW01_01030 at 198.364 kb on - strand, within CSW01_01030 at 198.364 kb on - strand, within CSW01_01030 at 198.401 kb on + strand, within CSW01_01030 at 198.409 kb on - strand, within CSW01_01030 at 198.429 kb on + strand, within CSW01_01030 at 198.429 kb on + strand, within CSW01_01030 at 198.448 kb on + strand, within CSW01_01030 at 198.448 kb on + strand, within CSW01_01030 at 198.448 kb on + strand, within CSW01_01030 at 198.448 kb on + strand, within CSW01_01030 at 198.448 kb on + strand, within CSW01_01030 at 198.448 kb on + strand, within CSW01_01030 at 198.448 kb on + strand, within CSW01_01030 at 198.448 kb on + strand, within CSW01_01030 at 198.456 kb on - strand, within CSW01_01030 at 198.456 kb on - strand, within CSW01_01030 at 198.484 kb on + strand, within CSW01_01030 at 198.489 kb on + strand, within CSW01_01030 at 198.489 kb on + strand, within CSW01_01030 at 198.497 kb on - strand, within CSW01_01030 at 198.497 kb on - strand, within CSW01_01030 at 198.504 kb on + strand, within CSW01_01030 at 198.512 kb on - strand, within CSW01_01030 at 198.512 kb on - strand, within CSW01_01030 at 198.512 kb on - strand, within CSW01_01030 at 198.553 kb on + strand, within CSW01_01030 at 198.630 kb on - strand at 198.630 kb on - strand at 198.630 kb on - strand at 198.657 kb on - strand at 198.729 kb on - strand at 198.781 kb on - strand at 198.818 kb on - strand at 198.846 kb on + strand at 198.874 kb on + strand at 198.874 kb on - strand at 198.877 kb on + strand at 198.878 kb on + strand at 198.878 kb on + strand at 198.878 kb on + strand at 198.886 kb on - strand at 198.886 kb on - strand at 198.887 kb on - strand at 198.893 kb on - strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.919 kb on + strand at 198.919 kb on + strand at 198.919 kb on + strand at 198.922 kb on - strand at 198.922 kb on - strand at 198.922 kb on - strand at 198.922 kb on - strand at 198.922 kb on - strand at 198.922 kb on - strand at 198.922 kb on - strand at 198.922 kb on - strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.967 kb on + strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.975 kb on - strand at 198.977 kb on + strand at 198.985 kb on - strand at 199.148 kb on + strand, within CSW01_01035 at 199.151 kb on - strand, within CSW01_01035 at 199.155 kb on + strand, within CSW01_01035 at 199.168 kb on - strand, within CSW01_01035 at 199.168 kb on - strand, within CSW01_01035 at 199.202 kb on + strand, within CSW01_01035 at 199.210 kb on - strand, within CSW01_01035 at 199.210 kb on - strand, within CSW01_01035 at 199.236 kb on - strand, within CSW01_01035 at 199.236 kb on - strand, within CSW01_01035 at 199.262 kb on + strand, within CSW01_01035 at 199.270 kb on - strand, within CSW01_01035 at 199.274 kb on + strand, within CSW01_01035 at 199.363 kb on - strand, within CSW01_01035 at 199.388 kb on - strand, within CSW01_01035 at 199.388 kb on - strand, within CSW01_01035 at 199.407 kb on + strand, within CSW01_01035 at 199.415 kb on - strand, within CSW01_01035 at 199.452 kb on + strand, within CSW01_01035 at 199.452 kb on + strand, within CSW01_01035 at 199.452 kb on + strand, within CSW01_01035 at 199.452 kb on + strand, within CSW01_01035 at 199.452 kb on + strand, within CSW01_01035 at 199.460 kb on - strand, within CSW01_01035 at 199.460 kb on - strand, within CSW01_01035 at 199.460 kb on - strand, within CSW01_01035 at 199.460 kb on - strand, within CSW01_01035 at 199.460 kb on - strand, within CSW01_01035 at 199.460 kb on - strand, within CSW01_01035 at 199.473 kb on + strand, within CSW01_01035 at 199.500 kb on + strand, within CSW01_01035 at 199.500 kb on + strand, within CSW01_01035 at 199.515 kb on + strand, within CSW01_01035 at 199.515 kb on + strand, within CSW01_01035 at 199.515 kb on + strand, within CSW01_01035 at 199.523 kb on - strand, within CSW01_01035 at 199.549 kb on + strand, within CSW01_01035 at 199.549 kb on + strand, within CSW01_01035 at 199.549 kb on + strand, within CSW01_01035 at 199.549 kb on + strand, within CSW01_01035 at 199.557 kb on - strand, within CSW01_01035 at 199.588 kb on - strand, within CSW01_01035 at 199.593 kb on + strand, within CSW01_01035 at 199.593 kb on + strand, within CSW01_01035 at 199.593 kb on + strand, within CSW01_01035 at 199.599 kb on - strand, within CSW01_01035 at 199.601 kb on - strand, within CSW01_01035 at 199.601 kb on - strand, within CSW01_01035 at 199.601 kb on - strand, within CSW01_01035 at 199.609 kb on + strand, within CSW01_01035 at 199.627 kb on + strand, within CSW01_01035 at 199.627 kb on + strand, within CSW01_01035 at 199.634 kb on - strand, within CSW01_01035 at 199.684 kb on - strand, within CSW01_01035
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 196,887 + -2.0 196,894 + -0.8 196,895 - -1.8 196,904 + -0.3 196,940 + +0.8 196,942 - -3.0 197,137 - +0.1 197,154 - +0.6 197,154 - +1.8 197,197 + -4.0 197,205 - CSW01_01025 0.11 +0.1 197,205 - CSW01_01025 0.11 +0.1 197,205 - CSW01_01025 0.11 -0.3 197,205 - CSW01_01025 0.11 -2.5 197,218 - CSW01_01025 0.13 +1.1 197,219 - CSW01_01025 0.13 -0.4 197,259 + CSW01_01025 0.19 -2.3 197,304 + CSW01_01025 0.26 -3.4 197,312 - CSW01_01025 0.27 -2.1 197,312 - CSW01_01025 0.27 -0.3 197,313 - CSW01_01025 0.27 -1.0 197,338 - CSW01_01025 0.31 +0.4 197,338 - CSW01_01025 0.31 +0.9 197,349 - CSW01_01025 0.33 +1.5 197,373 - CSW01_01025 0.36 +0.1 197,380 - CSW01_01025 0.37 -0.1 197,471 - CSW01_01025 0.51 +0.3 197,472 + CSW01_01025 0.51 +2.0 197,472 + CSW01_01025 0.51 -2.5 197,472 + CSW01_01025 0.51 -1.6 197,472 + CSW01_01025 0.51 +2.6 197,472 + CSW01_01025 0.51 -2.8 197,475 - CSW01_01025 0.51 +1.6 197,480 - CSW01_01025 0.52 -3.4 197,480 - CSW01_01025 0.52 +2.2 197,480 - CSW01_01025 0.52 +0.5 197,480 - CSW01_01025 0.52 -2.4 197,480 - CSW01_01025 0.52 -3.9 197,480 - CSW01_01025 0.52 -1.4 197,480 - CSW01_01025 0.52 +2.1 197,480 - CSW01_01025 0.52 -0.8 197,480 - CSW01_01025 0.52 +0.6 197,480 - CSW01_01025 0.52 +0.7 197,480 - CSW01_01025 0.52 -2.7 197,485 - CSW01_01025 0.53 -0.2 197,492 + CSW01_01025 0.54 -4.5 197,492 + CSW01_01025 0.54 +1.8 197,513 + CSW01_01025 0.57 +1.0 197,536 - CSW01_01025 0.61 -0.8 197,548 - CSW01_01025 0.62 -4.1 197,566 - CSW01_01025 0.65 -4.6 197,576 + CSW01_01025 0.67 -2.3 197,693 - CSW01_01025 0.84 +0.8 197,700 + CSW01_01025 0.85 -4.0 197,700 + CSW01_01025 0.85 +0.3 197,707 + CSW01_01025 0.86 +1.2 197,708 - CSW01_01025 0.86 +1.2 197,715 - CSW01_01025 0.87 -0.4 197,743 + +1.0 197,767 + -2.3 197,775 - -2.7 197,776 + -3.0 197,889 + +0.7 197,899 + -0.2 197,918 + -2.3 197,934 + -3.1 197,967 + CSW01_01030 0.11 +0.9 198,002 + CSW01_01030 0.16 -1.1 198,014 + CSW01_01030 0.17 -0.5 198,014 + CSW01_01030 0.17 -0.1 198,027 - CSW01_01030 0.19 -0.9 198,057 + CSW01_01030 0.23 +1.3 198,065 - CSW01_01030 0.23 -0.4 198,160 + CSW01_01030 0.35 +2.1 198,160 + CSW01_01030 0.35 +2.3 198,168 - CSW01_01030 0.36 +2.0 198,178 - CSW01_01030 0.37 +0.1 198,194 + CSW01_01030 0.39 -0.4 198,194 + CSW01_01030 0.39 +1.3 198,202 - CSW01_01030 0.40 +1.0 198,202 - CSW01_01030 0.40 -2.4 198,202 - CSW01_01030 0.40 +0.5 198,204 + CSW01_01030 0.41 +1.1 198,209 + CSW01_01030 0.41 +0.4 198,209 + CSW01_01030 0.41 -0.5 198,239 + CSW01_01030 0.45 -3.3 198,239 + CSW01_01030 0.45 +0.9 198,239 + CSW01_01030 0.45 -4.0 198,239 + CSW01_01030 0.45 -0.9 198,246 + CSW01_01030 0.46 -0.8 198,278 + CSW01_01030 0.50 +0.8 198,278 + CSW01_01030 0.50 +0.2 198,286 - CSW01_01030 0.51 +1.4 198,314 + CSW01_01030 0.54 -1.4 198,330 - CSW01_01030 0.56 +0.8 198,330 - CSW01_01030 0.56 +0.3 198,356 + CSW01_01030 0.59 +0.4 198,356 + CSW01_01030 0.59 -3.3 198,356 + CSW01_01030 0.59 -1.8 198,364 - CSW01_01030 0.60 -2.5 198,364 - CSW01_01030 0.60 -2.7 198,364 - CSW01_01030 0.60 -0.7 198,364 - CSW01_01030 0.60 +0.2 198,364 - CSW01_01030 0.60 +0.3 198,364 - CSW01_01030 0.60 +0.7 198,401 + CSW01_01030 0.65 +2.0 198,409 - CSW01_01030 0.66 -3.1 198,429 + CSW01_01030 0.68 -4.5 198,429 + CSW01_01030 0.68 +0.7 198,448 + CSW01_01030 0.71 -0.7 198,448 + CSW01_01030 0.71 +1.3 198,448 + CSW01_01030 0.71 +1.0 198,448 + CSW01_01030 0.71 +1.1 198,448 + CSW01_01030 0.71 +2.2 198,448 + CSW01_01030 0.71 -0.4 198,448 + CSW01_01030 0.71 +0.6 198,448 + CSW01_01030 0.71 +0.6 198,456 - CSW01_01030 0.72 -0.1 198,456 - CSW01_01030 0.72 +0.2 198,484 + CSW01_01030 0.75 +1.0 198,489 + CSW01_01030 0.76 +0.2 198,489 + CSW01_01030 0.76 -0.8 198,497 - CSW01_01030 0.77 +0.1 198,497 - CSW01_01030 0.77 +0.3 198,504 + CSW01_01030 0.77 +2.5 198,512 - CSW01_01030 0.78 +0.7 198,512 - CSW01_01030 0.78 +0.9 198,512 - CSW01_01030 0.78 -3.4 198,553 + CSW01_01030 0.84 +0.6 198,630 - -1.7 198,630 - -0.8 198,630 - +0.8 198,657 - +0.2 198,729 - -1.1 198,781 - -0.1 198,818 - -3.4 198,846 + +3.6 198,874 + +0.3 198,874 - +2.8 198,877 + +0.7 198,878 + -0.3 198,878 + +1.3 198,878 + +0.7 198,886 - +0.5 198,886 - -3.1 198,887 - -1.8 198,893 - +0.4 198,914 + -0.4 198,914 + -3.3 198,914 + +0.6 198,914 + -2.7 198,914 + +2.0 198,914 + +0.5 198,919 + +2.5 198,919 + +1.9 198,919 + +1.2 198,922 - +0.1 198,922 - +0.3 198,922 - +0.1 198,922 - -0.6 198,922 - +1.6 198,922 - -2.1 198,922 - +0.9 198,922 - +0.4 198,967 + -3.8 198,967 + -1.1 198,967 + -1.0 198,967 + -3.2 198,967 + -3.4 198,967 + -0.7 198,967 + -0.5 198,967 + -0.5 198,967 + +0.7 198,967 + +1.2 198,967 + +0.8 198,967 + -2.8 198,967 + -3.3 198,967 + -1.3 198,967 + +0.2 198,967 + -2.0 198,967 + +0.6 198,967 + -0.4 198,975 - +1.8 198,975 - -1.4 198,975 - -0.5 198,975 - -0.1 198,975 - +1.0 198,975 - -3.7 198,975 - +1.1 198,975 - -0.7 198,975 - -2.1 198,975 - -2.7 198,975 - -2.5 198,975 - +0.4 198,975 - -1.1 198,975 - -1.5 198,975 - -0.0 198,975 - +0.2 198,975 - -2.0 198,975 - -2.1 198,975 - +1.4 198,977 + +1.2 198,985 - +1.4 199,148 + CSW01_01035 0.18 +0.7 199,151 - CSW01_01035 0.18 -1.5 199,155 + CSW01_01035 0.18 -0.9 199,168 - CSW01_01035 0.19 -3.6 199,168 - CSW01_01035 0.19 +2.3 199,202 + CSW01_01035 0.21 -3.2 199,210 - CSW01_01035 0.21 -2.1 199,210 - CSW01_01035 0.21 +0.6 199,236 - CSW01_01035 0.23 +0.7 199,236 - CSW01_01035 0.23 +0.3 199,262 + CSW01_01035 0.24 -0.9 199,270 - CSW01_01035 0.25 -4.5 199,274 + CSW01_01035 0.25 +0.2 199,363 - CSW01_01035 0.30 -2.1 199,388 - CSW01_01035 0.31 +0.4 199,388 - CSW01_01035 0.31 -0.8 199,407 + CSW01_01035 0.32 +0.7 199,415 - CSW01_01035 0.33 +0.8 199,452 + CSW01_01035 0.35 -2.8 199,452 + CSW01_01035 0.35 -0.9 199,452 + CSW01_01035 0.35 +0.9 199,452 + CSW01_01035 0.35 -3.6 199,452 + CSW01_01035 0.35 -2.7 199,460 - CSW01_01035 0.35 +1.0 199,460 - CSW01_01035 0.35 -4.6 199,460 - CSW01_01035 0.35 -3.4 199,460 - CSW01_01035 0.35 -4.1 199,460 - CSW01_01035 0.35 -0.4 199,460 - CSW01_01035 0.35 -0.5 199,473 + CSW01_01035 0.36 -0.3 199,500 + CSW01_01035 0.38 -0.1 199,500 + CSW01_01035 0.38 +0.8 199,515 + CSW01_01035 0.39 +0.1 199,515 + CSW01_01035 0.39 +3.3 199,515 + CSW01_01035 0.39 -3.1 199,523 - CSW01_01035 0.39 +0.4 199,549 + CSW01_01035 0.40 -1.2 199,549 + CSW01_01035 0.40 -3.8 199,549 + CSW01_01035 0.40 -0.2 199,549 + CSW01_01035 0.40 +1.2 199,557 - CSW01_01035 0.41 -3.1 199,588 - CSW01_01035 0.43 +0.5 199,593 + CSW01_01035 0.43 -1.0 199,593 + CSW01_01035 0.43 +0.3 199,593 + CSW01_01035 0.43 -2.9 199,599 - CSW01_01035 0.43 +0.5 199,601 - CSW01_01035 0.43 +1.5 199,601 - CSW01_01035 0.43 -0.4 199,601 - CSW01_01035 0.43 -1.3 199,609 + CSW01_01035 0.44 +0.2 199,627 + CSW01_01035 0.45 +0.6 199,627 + CSW01_01035 0.45 +0.4 199,634 - CSW01_01035 0.45 +0.9 199,684 - CSW01_01035 0.48 +0.4
Or see this region's nucleotide sequence