Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00860

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00855 and CSW01_00860 are separated by 18 nucleotidesCSW01_00860 and CSW01_00865 are separated by 145 nucleotides CSW01_00855: CSW01_00855 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 162,542 to 163,648 _00855 CSW01_00860: CSW01_00860 - TetR/AcrR family transcriptional regulator, at 163,667 to 164,263 _00860 CSW01_00865: CSW01_00865 - DNA helicase Rep, at 164,409 to 166,424 _00865 Position (kb) 163 164 165Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 162.725 kb on + strand, within CSW01_00855at 162.733 kb on - strand, within CSW01_00855at 162.748 kb on + strand, within CSW01_00855at 162.757 kb on + strand, within CSW01_00855at 162.765 kb on - strand, within CSW01_00855at 162.772 kb on + strand, within CSW01_00855at 162.772 kb on + strand, within CSW01_00855at 162.773 kb on + strand, within CSW01_00855at 162.773 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.780 kb on - strand, within CSW01_00855at 162.789 kb on + strand, within CSW01_00855at 162.797 kb on - strand, within CSW01_00855at 162.902 kb on - strand, within CSW01_00855at 162.941 kb on + strand, within CSW01_00855at 162.949 kb on - strand, within CSW01_00855at 163.035 kb on + strand, within CSW01_00855at 163.043 kb on - strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.058 kb on + strand, within CSW01_00855at 163.066 kb on - strand, within CSW01_00855at 163.079 kb on + strand, within CSW01_00855at 163.162 kb on + strand, within CSW01_00855at 163.201 kb on + strand, within CSW01_00855at 163.206 kb on + strand, within CSW01_00855at 163.232 kb on + strand, within CSW01_00855at 163.259 kb on + strand, within CSW01_00855at 163.267 kb on - strand, within CSW01_00855at 163.267 kb on - strand, within CSW01_00855at 163.274 kb on - strand, within CSW01_00855at 163.274 kb on - strand, within CSW01_00855at 163.317 kb on - strand, within CSW01_00855at 163.349 kb on - strand, within CSW01_00855at 163.355 kb on + strand, within CSW01_00855at 163.361 kb on + strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.363 kb on - strand, within CSW01_00855at 163.422 kb on - strand, within CSW01_00855at 163.443 kb on + strand, within CSW01_00855at 163.443 kb on - strand, within CSW01_00855at 163.456 kb on + strand, within CSW01_00855at 163.464 kb on - strand, within CSW01_00855at 163.506 kb on - strand, within CSW01_00855at 163.587 kb on - strandat 163.604 kb on + strandat 163.660 kb on + strandat 163.668 kb on - strandat 163.756 kb on + strand, within CSW01_00860at 163.802 kb on - strand, within CSW01_00860at 163.841 kb on + strand, within CSW01_00860at 163.930 kb on - strand, within CSW01_00860at 163.956 kb on + strand, within CSW01_00860at 163.989 kb on + strand, within CSW01_00860at 164.030 kb on + strand, within CSW01_00860at 164.221 kb on + strandat 164.221 kb on + strandat 164.221 kb on + strandat 164.228 kb on + strandat 164.228 kb on + strandat 164.229 kb on - strandat 164.229 kb on - strandat 164.229 kb on - strandat 164.238 kb on + strandat 164.244 kb on - strandat 164.246 kb on - strandat 164.354 kb on + strandat 164.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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162,725 + CSW01_00855 0.17 +0.5
162,733 - CSW01_00855 0.17 -2.6
162,748 + CSW01_00855 0.19 -0.8
162,757 + CSW01_00855 0.19 +1.2
162,765 - CSW01_00855 0.20 +0.7
162,772 + CSW01_00855 0.21 -1.3
162,772 + CSW01_00855 0.21 -4.9
162,773 + CSW01_00855 0.21 -3.0
162,773 - CSW01_00855 0.21 -3.1
162,780 - CSW01_00855 0.21 -0.5
162,780 - CSW01_00855 0.21 -3.0
162,780 - CSW01_00855 0.21 -0.9
162,780 - CSW01_00855 0.21 -1.7
162,780 - CSW01_00855 0.21 -0.8
162,780 - CSW01_00855 0.21 -0.8
162,780 - CSW01_00855 0.21 -0.3
162,780 - CSW01_00855 0.21 -2.9
162,780 - CSW01_00855 0.21 +1.3
162,789 + CSW01_00855 0.22 -0.3
162,797 - CSW01_00855 0.23 -4.3
162,902 - CSW01_00855 0.33 -1.0
162,941 + CSW01_00855 0.36 -0.4
162,949 - CSW01_00855 0.37 -0.0
163,035 + CSW01_00855 0.45 +1.2
163,043 - CSW01_00855 0.45 -1.2
163,058 + CSW01_00855 0.47 +1.3
163,058 + CSW01_00855 0.47 +0.8
163,058 + CSW01_00855 0.47 +0.3
163,058 + CSW01_00855 0.47 -3.1
163,058 + CSW01_00855 0.47 +0.4
163,066 - CSW01_00855 0.47 +3.1
163,079 + CSW01_00855 0.49 -3.4
163,162 + CSW01_00855 0.56 +0.2
163,201 + CSW01_00855 0.60 -3.7
163,206 + CSW01_00855 0.60 +1.0
163,232 + CSW01_00855 0.62 +0.6
163,259 + CSW01_00855 0.65 -4.7
163,267 - CSW01_00855 0.65 +0.4
163,267 - CSW01_00855 0.65 -1.8
163,274 - CSW01_00855 0.66 +0.2
163,274 - CSW01_00855 0.66 +1.6
163,317 - CSW01_00855 0.70 -2.8
163,349 - CSW01_00855 0.73 +2.1
163,355 + CSW01_00855 0.73 -2.7
163,361 + CSW01_00855 0.74 +0.5
163,363 - CSW01_00855 0.74 -3.3
163,363 - CSW01_00855 0.74 -3.1
163,363 - CSW01_00855 0.74 -0.4
163,363 - CSW01_00855 0.74 +1.7
163,422 - CSW01_00855 0.79 -3.6
163,443 + CSW01_00855 0.81 -1.1
163,443 - CSW01_00855 0.81 +0.2
163,456 + CSW01_00855 0.83 +0.9
163,464 - CSW01_00855 0.83 +1.1
163,506 - CSW01_00855 0.87 -0.9
163,587 - -4.5
163,604 + +1.3
163,660 + +0.7
163,668 - -4.3
163,756 + CSW01_00860 0.15 +0.0
163,802 - CSW01_00860 0.23 -2.1
163,841 + CSW01_00860 0.29 -2.0
163,930 - CSW01_00860 0.44 +0.0
163,956 + CSW01_00860 0.48 +0.5
163,989 + CSW01_00860 0.54 +0.5
164,030 + CSW01_00860 0.61 -0.4
164,221 + -3.4
164,221 + +0.6
164,221 + +0.5
164,228 + +2.3
164,228 + -0.4
164,229 - -2.1
164,229 - -3.1
164,229 - -2.1
164,238 + +0.5
164,244 - -4.5
164,246 - +1.1
164,354 + +0.2
164,414 + -3.1

Or see this region's nucleotide sequence