Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00795

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00790 and CSW01_00795 are separated by 72 nucleotidesCSW01_00795 and CSW01_00800 are separated by 392 nucleotides CSW01_00790: CSW01_00790 - vitamin B12 transporter BtuB, at 145,371 to 147,206 _00790 CSW01_00795: CSW01_00795 - alkaline serine protease, at 147,279 to 148,886 _00795 CSW01_00800: CSW01_00800 - glutamate racemase, at 149,279 to 150,076 _00800 Position (kb) 147 148 149Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 146.295 kb on - strand, within CSW01_00790at 146.296 kb on + strand, within CSW01_00790at 146.296 kb on + strand, within CSW01_00790at 146.296 kb on + strand, within CSW01_00790at 146.364 kb on + strand, within CSW01_00790at 146.364 kb on + strand, within CSW01_00790at 146.364 kb on + strand, within CSW01_00790at 146.374 kb on + strand, within CSW01_00790at 146.374 kb on + strand, within CSW01_00790at 146.374 kb on + strand, within CSW01_00790at 146.423 kb on + strand, within CSW01_00790at 146.423 kb on + strand, within CSW01_00790at 146.431 kb on - strand, within CSW01_00790at 146.474 kb on + strand, within CSW01_00790at 146.485 kb on + strand, within CSW01_00790at 146.492 kb on - strand, within CSW01_00790at 146.492 kb on - strand, within CSW01_00790at 146.538 kb on + strand, within CSW01_00790at 146.546 kb on - strand, within CSW01_00790at 146.546 kb on - strand, within CSW01_00790at 146.570 kb on - strand, within CSW01_00790at 146.577 kb on - strand, within CSW01_00790at 146.592 kb on + strand, within CSW01_00790at 146.592 kb on + strand, within CSW01_00790at 146.592 kb on + strand, within CSW01_00790at 146.600 kb on - strand, within CSW01_00790at 146.671 kb on + strand, within CSW01_00790at 146.676 kb on + strand, within CSW01_00790at 146.676 kb on + strand, within CSW01_00790at 146.679 kb on - strand, within CSW01_00790at 146.684 kb on - strand, within CSW01_00790at 146.684 kb on - strand, within CSW01_00790at 146.754 kb on + strand, within CSW01_00790at 146.793 kb on + strand, within CSW01_00790at 146.822 kb on - strand, within CSW01_00790at 146.827 kb on - strand, within CSW01_00790at 146.847 kb on + strand, within CSW01_00790at 146.847 kb on + strand, within CSW01_00790at 146.858 kb on + strand, within CSW01_00790at 146.858 kb on + strand, within CSW01_00790at 146.865 kb on - strand, within CSW01_00790at 146.866 kb on - strand, within CSW01_00790at 146.871 kb on - strand, within CSW01_00790at 146.902 kb on + strand, within CSW01_00790at 146.909 kb on + strand, within CSW01_00790at 146.910 kb on - strand, within CSW01_00790at 146.914 kb on + strand, within CSW01_00790at 146.917 kb on - strand, within CSW01_00790at 146.922 kb on - strand, within CSW01_00790at 146.945 kb on + strand, within CSW01_00790at 146.953 kb on - strand, within CSW01_00790at 146.991 kb on + strand, within CSW01_00790at 147.003 kb on + strand, within CSW01_00790at 147.003 kb on + strand, within CSW01_00790at 147.003 kb on + strand, within CSW01_00790at 147.003 kb on + strand, within CSW01_00790at 147.003 kb on + strand, within CSW01_00790at 147.011 kb on + strand, within CSW01_00790at 147.011 kb on - strand, within CSW01_00790at 147.011 kb on - strand, within CSW01_00790at 147.025 kb on - strandat 147.025 kb on - strandat 147.025 kb on - strandat 147.042 kb on - strandat 147.092 kb on + strandat 147.100 kb on - strandat 147.152 kb on + strandat 147.208 kb on - strandat 147.216 kb on - strandat 147.290 kb on + strandat 147.304 kb on + strandat 147.311 kb on + strandat 147.319 kb on + strandat 147.319 kb on + strandat 147.321 kb on + strandat 147.327 kb on - strandat 147.329 kb on + strandat 147.329 kb on + strandat 147.329 kb on + strandat 147.331 kb on + strandat 147.337 kb on - strandat 147.339 kb on - strandat 147.449 kb on + strand, within CSW01_00795at 147.462 kb on - strand, within CSW01_00795at 147.467 kb on - strand, within CSW01_00795at 147.477 kb on - strand, within CSW01_00795at 147.482 kb on - strand, within CSW01_00795at 147.558 kb on - strand, within CSW01_00795at 147.558 kb on - strand, within CSW01_00795at 147.598 kb on + strand, within CSW01_00795at 147.639 kb on - strand, within CSW01_00795at 147.652 kb on + strand, within CSW01_00795at 147.660 kb on - strand, within CSW01_00795at 147.734 kb on + strand, within CSW01_00795at 147.765 kb on + strand, within CSW01_00795at 147.765 kb on + strand, within CSW01_00795at 147.765 kb on + strand, within CSW01_00795at 147.765 kb on + strand, within CSW01_00795at 147.765 kb on + strand, within CSW01_00795at 147.765 kb on + strand, within CSW01_00795at 147.773 kb on - strand, within CSW01_00795at 147.773 kb on - strand, within CSW01_00795at 147.773 kb on - strand, within CSW01_00795at 147.773 kb on - strand, within CSW01_00795at 147.773 kb on - strand, within CSW01_00795at 147.773 kb on - strand, within CSW01_00795at 147.798 kb on + strand, within CSW01_00795at 147.806 kb on - strand, within CSW01_00795at 147.832 kb on + strand, within CSW01_00795at 147.832 kb on + strand, within CSW01_00795at 147.862 kb on - strand, within CSW01_00795at 148.003 kb on + strand, within CSW01_00795at 148.021 kb on - strand, within CSW01_00795at 148.041 kb on - strand, within CSW01_00795at 148.045 kb on - strand, within CSW01_00795at 148.053 kb on - strand, within CSW01_00795at 148.076 kb on - strand, within CSW01_00795at 148.168 kb on + strand, within CSW01_00795at 148.223 kb on - strand, within CSW01_00795at 148.244 kb on + strand, within CSW01_00795at 148.252 kb on - strand, within CSW01_00795at 148.252 kb on - strand, within CSW01_00795at 148.252 kb on - strand, within CSW01_00795at 148.259 kb on - strand, within CSW01_00795at 148.259 kb on - strand, within CSW01_00795at 148.259 kb on - strand, within CSW01_00795at 148.314 kb on - strand, within CSW01_00795at 148.325 kb on + strand, within CSW01_00795at 148.335 kb on + strand, within CSW01_00795at 148.335 kb on + strand, within CSW01_00795at 148.335 kb on + strand, within CSW01_00795at 148.343 kb on - strand, within CSW01_00795at 148.343 kb on - strand, within CSW01_00795at 148.343 kb on - strand, within CSW01_00795at 148.412 kb on + strand, within CSW01_00795at 148.412 kb on + strand, within CSW01_00795at 148.427 kb on + strand, within CSW01_00795at 148.427 kb on + strand, within CSW01_00795at 148.458 kb on + strand, within CSW01_00795at 148.461 kb on - strand, within CSW01_00795at 148.501 kb on - strand, within CSW01_00795at 148.531 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.567 kb on + strand, within CSW01_00795at 148.569 kb on + strand, within CSW01_00795at 148.575 kb on - strand, within CSW01_00795at 148.575 kb on - strand, within CSW01_00795at 148.575 kb on - strand, within CSW01_00795at 148.575 kb on - strand, within CSW01_00795at 148.577 kb on - strand, within CSW01_00795at 148.625 kb on + strand, within CSW01_00795at 148.640 kb on - strand, within CSW01_00795at 148.686 kb on - strand, within CSW01_00795at 148.695 kb on - strand, within CSW01_00795at 148.724 kb on - strand, within CSW01_00795at 148.764 kb on + strandat 148.774 kb on + strandat 148.779 kb on + strandat 148.823 kb on + strandat 148.823 kb on + strandat 148.823 kb on + strandat 148.831 kb on - strandat 148.916 kb on + strandat 149.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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146,295 - CSW01_00790 0.50 -0.2
146,296 + CSW01_00790 0.50 +1.5
146,296 + CSW01_00790 0.50 -3.9
146,296 + CSW01_00790 0.50 +0.7
146,364 + CSW01_00790 0.54 +0.7
146,364 + CSW01_00790 0.54 +0.4
146,364 + CSW01_00790 0.54 +0.8
146,374 + CSW01_00790 0.55 -3.8
146,374 + CSW01_00790 0.55 +0.5
146,374 + CSW01_00790 0.55 -2.5
146,423 + CSW01_00790 0.57 -0.0
146,423 + CSW01_00790 0.57 -4.9
146,431 - CSW01_00790 0.58 -2.1
146,474 + CSW01_00790 0.60 +1.1
146,485 + CSW01_00790 0.61 +0.2
146,492 - CSW01_00790 0.61 -0.8
146,492 - CSW01_00790 0.61 +0.8
146,538 + CSW01_00790 0.64 -0.2
146,546 - CSW01_00790 0.64 -0.2
146,546 - CSW01_00790 0.64 +0.4
146,570 - CSW01_00790 0.65 -2.6
146,577 - CSW01_00790 0.66 -3.7
146,592 + CSW01_00790 0.67 +1.2
146,592 + CSW01_00790 0.67 -0.6
146,592 + CSW01_00790 0.67 -4.1
146,600 - CSW01_00790 0.67 -0.2
146,671 + CSW01_00790 0.71 -0.1
146,676 + CSW01_00790 0.71 +1.0
146,676 + CSW01_00790 0.71 +0.0
146,679 - CSW01_00790 0.71 +0.4
146,684 - CSW01_00790 0.72 +1.7
146,684 - CSW01_00790 0.72 +0.7
146,754 + CSW01_00790 0.75 +0.0
146,793 + CSW01_00790 0.77 -1.0
146,822 - CSW01_00790 0.79 -1.0
146,827 - CSW01_00790 0.79 -1.3
146,847 + CSW01_00790 0.80 -2.0
146,847 + CSW01_00790 0.80 +0.3
146,858 + CSW01_00790 0.81 -0.1
146,858 + CSW01_00790 0.81 -0.3
146,865 - CSW01_00790 0.81 -3.1
146,866 - CSW01_00790 0.81 -0.7
146,871 - CSW01_00790 0.82 -0.6
146,902 + CSW01_00790 0.83 -0.1
146,909 + CSW01_00790 0.84 -4.1
146,910 - CSW01_00790 0.84 -2.1
146,914 + CSW01_00790 0.84 -0.5
146,917 - CSW01_00790 0.84 -0.5
146,922 - CSW01_00790 0.84 -2.4
146,945 + CSW01_00790 0.86 +0.9
146,953 - CSW01_00790 0.86 +1.5
146,991 + CSW01_00790 0.88 +0.5
147,003 + CSW01_00790 0.89 -0.9
147,003 + CSW01_00790 0.89 -0.0
147,003 + CSW01_00790 0.89 -0.6
147,003 + CSW01_00790 0.89 +0.2
147,003 + CSW01_00790 0.89 -2.4
147,011 + CSW01_00790 0.89 +0.2
147,011 - CSW01_00790 0.89 -0.4
147,011 - CSW01_00790 0.89 +0.4
147,025 - -0.1
147,025 - -4.5
147,025 - +0.9
147,042 - +1.2
147,092 + -0.2
147,100 - -2.7
147,152 + +1.0
147,208 - -2.0
147,216 - +0.8
147,290 + -1.0
147,304 + +1.1
147,311 + +1.7
147,319 + +0.6
147,319 + -2.6
147,321 + -2.4
147,327 - +1.9
147,329 + +0.6
147,329 + +0.9
147,329 + +1.3
147,331 + -2.0
147,337 - -2.5
147,339 - +0.9
147,449 + CSW01_00795 0.11 +0.0
147,462 - CSW01_00795 0.11 -0.2
147,467 - CSW01_00795 0.12 +1.7
147,477 - CSW01_00795 0.12 +0.8
147,482 - CSW01_00795 0.13 -0.5
147,558 - CSW01_00795 0.17 +0.6
147,558 - CSW01_00795 0.17 -4.2
147,598 + CSW01_00795 0.20 -0.6
147,639 - CSW01_00795 0.22 +1.7
147,652 + CSW01_00795 0.23 +0.5
147,660 - CSW01_00795 0.24 +0.2
147,734 + CSW01_00795 0.28 +1.0
147,765 + CSW01_00795 0.30 +1.1
147,765 + CSW01_00795 0.30 -0.1
147,765 + CSW01_00795 0.30 +1.1
147,765 + CSW01_00795 0.30 +0.2
147,765 + CSW01_00795 0.30 +1.3
147,765 + CSW01_00795 0.30 +0.3
147,773 - CSW01_00795 0.31 -0.0
147,773 - CSW01_00795 0.31 -0.8
147,773 - CSW01_00795 0.31 +0.2
147,773 - CSW01_00795 0.31 +0.8
147,773 - CSW01_00795 0.31 +2.5
147,773 - CSW01_00795 0.31 +0.7
147,798 + CSW01_00795 0.32 +1.4
147,806 - CSW01_00795 0.33 +1.1
147,832 + CSW01_00795 0.34 -0.1
147,832 + CSW01_00795 0.34 -0.5
147,862 - CSW01_00795 0.36 -2.0
148,003 + CSW01_00795 0.45 +0.6
148,021 - CSW01_00795 0.46 -1.7
148,041 - CSW01_00795 0.47 +0.5
148,045 - CSW01_00795 0.48 +1.5
148,053 - CSW01_00795 0.48 -1.7
148,076 - CSW01_00795 0.50 -2.6
148,168 + CSW01_00795 0.55 -0.5
148,223 - CSW01_00795 0.59 -2.4
148,244 + CSW01_00795 0.60 +0.3
148,252 - CSW01_00795 0.61 -0.9
148,252 - CSW01_00795 0.61 +0.6
148,252 - CSW01_00795 0.61 +1.4
148,259 - CSW01_00795 0.61 -4.5
148,259 - CSW01_00795 0.61 -2.5
148,259 - CSW01_00795 0.61 +1.3
148,314 - CSW01_00795 0.64 +0.8
148,325 + CSW01_00795 0.65 +0.2
148,335 + CSW01_00795 0.66 +0.9
148,335 + CSW01_00795 0.66 +2.3
148,335 + CSW01_00795 0.66 +0.2
148,343 - CSW01_00795 0.66 -0.7
148,343 - CSW01_00795 0.66 -0.2
148,343 - CSW01_00795 0.66 -0.1
148,412 + CSW01_00795 0.70 +0.5
148,412 + CSW01_00795 0.70 +0.8
148,427 + CSW01_00795 0.71 -1.5
148,427 + CSW01_00795 0.71 -1.0
148,458 + CSW01_00795 0.73 -0.2
148,461 - CSW01_00795 0.74 -3.2
148,501 - CSW01_00795 0.76 +0.4
148,531 + CSW01_00795 0.78 +0.8
148,567 + CSW01_00795 0.80 +0.4
148,567 + CSW01_00795 0.80 -4.1
148,567 + CSW01_00795 0.80 -1.2
148,567 + CSW01_00795 0.80 +1.8
148,567 + CSW01_00795 0.80 +1.0
148,567 + CSW01_00795 0.80 -0.6
148,567 + CSW01_00795 0.80 +0.6
148,569 + CSW01_00795 0.80 +0.9
148,575 - CSW01_00795 0.81 +1.2
148,575 - CSW01_00795 0.81 +1.1
148,575 - CSW01_00795 0.81 +0.7
148,575 - CSW01_00795 0.81 -2.1
148,577 - CSW01_00795 0.81 -3.1
148,625 + CSW01_00795 0.84 +0.4
148,640 - CSW01_00795 0.85 +0.6
148,686 - CSW01_00795 0.88 -0.1
148,695 - CSW01_00795 0.88 -0.1
148,724 - CSW01_00795 0.90 -0.9
148,764 + -3.1
148,774 + -4.9
148,779 + -0.0
148,823 + -1.7
148,823 + -3.3
148,823 + +1.2
148,831 - -2.7
148,916 + -0.5
149,223 + -0.7

Or see this region's nucleotide sequence