Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00785

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00775 and CSW01_00780 are separated by 39 nucleotidesCSW01_00780 and CSW01_00785 are separated by 36 nucleotidesCSW01_00785 and CSW01_00790 are separated by 397 nucleotides CSW01_00775: CSW01_00775 - HTH-type transcriptional repressor FabR, at 142,775 to 143,416 _00775 CSW01_00780: CSW01_00780 - hypothetical protein, at 143,456 to 143,827 _00780 CSW01_00785: CSW01_00785 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 143,864 to 144,973 _00785 CSW01_00790: CSW01_00790 - vitamin B12 transporter BtuB, at 145,371 to 147,206 _00790 Position (kb) 143 144 145Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 142.908 kb on + strand, within CSW01_00775at 142.957 kb on + strand, within CSW01_00775at 142.965 kb on - strand, within CSW01_00775at 142.980 kb on - strand, within CSW01_00775at 143.015 kb on + strand, within CSW01_00775at 143.015 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.088 kb on + strand, within CSW01_00775at 143.088 kb on + strand, within CSW01_00775at 143.096 kb on - strand, within CSW01_00775at 143.096 kb on - strand, within CSW01_00775at 143.150 kb on + strand, within CSW01_00775at 143.165 kb on + strand, within CSW01_00775at 143.173 kb on - strand, within CSW01_00775at 143.190 kb on + strand, within CSW01_00775at 143.235 kb on - strand, within CSW01_00775at 143.255 kb on + strand, within CSW01_00775at 143.331 kb on - strand, within CSW01_00775at 143.350 kb on + strand, within CSW01_00775at 143.350 kb on + strand, within CSW01_00775at 143.350 kb on + strand, within CSW01_00775at 143.358 kb on - strandat 143.358 kb on - strandat 143.358 kb on - strandat 143.358 kb on - strandat 143.358 kb on - strandat 143.368 kb on - strandat 143.370 kb on + strandat 143.371 kb on - strandat 143.395 kb on + strandat 143.403 kb on - strandat 143.417 kb on + strandat 143.494 kb on + strand, within CSW01_00780at 143.502 kb on - strand, within CSW01_00780at 143.562 kb on - strand, within CSW01_00780at 143.573 kb on - strand, within CSW01_00780at 143.597 kb on + strand, within CSW01_00780at 143.696 kb on + strand, within CSW01_00780at 143.711 kb on + strand, within CSW01_00780at 143.723 kb on + strand, within CSW01_00780at 143.768 kb on + strand, within CSW01_00780at 143.929 kb on + strandat 143.937 kb on - strandat 143.937 kb on - strandat 144.010 kb on - strand, within CSW01_00785at 144.016 kb on + strand, within CSW01_00785at 144.023 kb on + strand, within CSW01_00785at 144.050 kb on + strand, within CSW01_00785at 144.106 kb on - strand, within CSW01_00785at 144.122 kb on + strand, within CSW01_00785at 144.122 kb on - strand, within CSW01_00785at 144.206 kb on - strand, within CSW01_00785at 144.206 kb on - strand, within CSW01_00785at 144.323 kb on - strand, within CSW01_00785at 144.352 kb on - strand, within CSW01_00785at 144.369 kb on - strand, within CSW01_00785at 144.435 kb on + strand, within CSW01_00785at 144.435 kb on + strand, within CSW01_00785at 144.443 kb on - strand, within CSW01_00785at 144.443 kb on - strand, within CSW01_00785at 144.454 kb on + strand, within CSW01_00785at 144.455 kb on - strand, within CSW01_00785at 144.526 kb on + strand, within CSW01_00785at 144.526 kb on + strand, within CSW01_00785at 144.527 kb on + strand, within CSW01_00785at 144.535 kb on - strand, within CSW01_00785at 144.535 kb on - strand, within CSW01_00785at 144.553 kb on + strand, within CSW01_00785at 144.561 kb on - strand, within CSW01_00785at 144.592 kb on + strand, within CSW01_00785at 144.593 kb on - strand, within CSW01_00785at 144.651 kb on + strand, within CSW01_00785at 144.651 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.678 kb on + strand, within CSW01_00785at 144.681 kb on - strand, within CSW01_00785at 144.681 kb on - strand, within CSW01_00785at 144.681 kb on - strand, within CSW01_00785at 144.681 kb on - strand, within CSW01_00785at 144.753 kb on + strand, within CSW01_00785at 144.868 kb on + strandat 144.868 kb on + strandat 144.874 kb on + strandat 144.879 kb on + strandat 144.887 kb on - strandat 144.887 kb on - strandat 144.929 kb on + strandat 144.936 kb on + strandat 144.954 kb on - strandat 144.954 kb on - strandat 145.071 kb on + strandat 145.071 kb on + strandat 145.071 kb on + strandat 145.071 kb on + strandat 145.077 kb on + strandat 145.079 kb on - strandat 145.079 kb on - strandat 145.079 kb on - strandat 145.079 kb on - strandat 145.086 kb on - strandat 145.097 kb on + strandat 145.148 kb on + strandat 145.198 kb on + strandat 145.211 kb on - strandat 145.277 kb on + strandat 145.282 kb on + strandat 145.285 kb on - strandat 145.295 kb on + strandat 145.317 kb on + strandat 145.317 kb on + strandat 145.317 kb on + strandat 145.319 kb on + strandat 145.319 kb on + strandat 145.325 kb on - strandat 145.325 kb on - strandat 145.327 kb on + strandat 145.327 kb on - strandat 145.330 kb on + strandat 145.338 kb on - strandat 145.338 kb on - strandat 145.348 kb on - strandat 145.356 kb on + strandat 145.361 kb on + strandat 145.404 kb on - strandat 145.414 kb on + strandat 145.505 kb on - strandat 145.538 kb on - strandat 145.561 kb on - strand, within CSW01_00790at 145.561 kb on - strand, within CSW01_00790at 145.601 kb on - strand, within CSW01_00790at 145.644 kb on + strand, within CSW01_00790at 145.739 kb on + strand, within CSW01_00790at 145.739 kb on + strand, within CSW01_00790at 145.800 kb on - strand, within CSW01_00790at 145.800 kb on - strand, within CSW01_00790at 145.827 kb on + strand, within CSW01_00790at 145.837 kb on + strand, within CSW01_00790at 145.840 kb on + strand, within CSW01_00790at 145.864 kb on + strand, within CSW01_00790at 145.874 kb on + strand, within CSW01_00790at 145.877 kb on - strand, within CSW01_00790at 145.882 kb on - strand, within CSW01_00790at 145.882 kb on - strand, within CSW01_00790at 145.896 kb on - strand, within CSW01_00790at 145.932 kb on + strand, within CSW01_00790

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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142,908 + CSW01_00775 0.21 -1.8
142,957 + CSW01_00775 0.28 +0.1
142,965 - CSW01_00775 0.30 -0.3
142,980 - CSW01_00775 0.32 +2.1
143,015 + CSW01_00775 0.37 +0.1
143,015 + CSW01_00775 0.37 +0.4
143,064 + CSW01_00775 0.45 -1.7
143,064 + CSW01_00775 0.45 +0.0
143,064 + CSW01_00775 0.45 -1.3
143,064 + CSW01_00775 0.45 +2.6
143,064 + CSW01_00775 0.45 -1.7
143,064 + CSW01_00775 0.45 -0.1
143,072 - CSW01_00775 0.46 +1.3
143,072 - CSW01_00775 0.46 -3.0
143,072 - CSW01_00775 0.46 +0.7
143,072 - CSW01_00775 0.46 +1.5
143,072 - CSW01_00775 0.46 +0.4
143,088 + CSW01_00775 0.49 -2.4
143,088 + CSW01_00775 0.49 -0.5
143,096 - CSW01_00775 0.50 -1.3
143,096 - CSW01_00775 0.50 +0.6
143,150 + CSW01_00775 0.58 -4.4
143,165 + CSW01_00775 0.61 +0.4
143,173 - CSW01_00775 0.62 +0.6
143,190 + CSW01_00775 0.65 -1.1
143,235 - CSW01_00775 0.72 +0.6
143,255 + CSW01_00775 0.75 -0.4
143,331 - CSW01_00775 0.87 +1.6
143,350 + CSW01_00775 0.90 -0.9
143,350 + CSW01_00775 0.90 -3.1
143,350 + CSW01_00775 0.90 -0.4
143,358 - +0.0
143,358 - +0.7
143,358 - +0.2
143,358 - -2.4
143,358 - -0.4
143,368 - +0.2
143,370 + -0.3
143,371 - +1.8
143,395 + +1.4
143,403 - -0.0
143,417 + +0.4
143,494 + CSW01_00780 0.10 -2.1
143,502 - CSW01_00780 0.12 -2.1
143,562 - CSW01_00780 0.28 +3.0
143,573 - CSW01_00780 0.31 -0.6
143,597 + CSW01_00780 0.38 +0.6
143,696 + CSW01_00780 0.65 -2.0
143,711 + CSW01_00780 0.69 -0.1
143,723 + CSW01_00780 0.72 +0.7
143,768 + CSW01_00780 0.84 -0.2
143,929 + -0.5
143,937 - -0.1
143,937 - +1.0
144,010 - CSW01_00785 0.13 -2.3
144,016 + CSW01_00785 0.14 -1.3
144,023 + CSW01_00785 0.14 -0.9
144,050 + CSW01_00785 0.17 -2.1
144,106 - CSW01_00785 0.22 -4.6
144,122 + CSW01_00785 0.23 -1.1
144,122 - CSW01_00785 0.23 -1.2
144,206 - CSW01_00785 0.31 -0.1
144,206 - CSW01_00785 0.31 +1.9
144,323 - CSW01_00785 0.41 -0.3
144,352 - CSW01_00785 0.44 -0.6
144,369 - CSW01_00785 0.45 +0.3
144,435 + CSW01_00785 0.51 +1.6
144,435 + CSW01_00785 0.51 +0.5
144,443 - CSW01_00785 0.52 -0.0
144,443 - CSW01_00785 0.52 -3.3
144,454 + CSW01_00785 0.53 -3.8
144,455 - CSW01_00785 0.53 -3.3
144,526 + CSW01_00785 0.60 -2.7
144,526 + CSW01_00785 0.60 -0.5
144,527 + CSW01_00785 0.60 +0.4
144,535 - CSW01_00785 0.60 -0.3
144,535 - CSW01_00785 0.60 -2.7
144,553 + CSW01_00785 0.62 +0.8
144,561 - CSW01_00785 0.63 -2.6
144,592 + CSW01_00785 0.66 -0.2
144,593 - CSW01_00785 0.66 +1.4
144,651 + CSW01_00785 0.71 -1.5
144,651 + CSW01_00785 0.71 +0.8
144,673 + CSW01_00785 0.73 -0.2
144,673 + CSW01_00785 0.73 +0.5
144,673 + CSW01_00785 0.73 -2.6
144,673 + CSW01_00785 0.73 -5.0
144,673 + CSW01_00785 0.73 +0.4
144,673 + CSW01_00785 0.73 -2.9
144,673 + CSW01_00785 0.73 -2.8
144,673 + CSW01_00785 0.73 -0.7
144,673 + CSW01_00785 0.73 -0.4
144,673 + CSW01_00785 0.73 +0.1
144,673 + CSW01_00785 0.73 -1.6
144,673 + CSW01_00785 0.73 +0.4
144,673 + CSW01_00785 0.73 +1.8
144,678 + CSW01_00785 0.73 +0.5
144,681 - CSW01_00785 0.74 +0.7
144,681 - CSW01_00785 0.74 -0.2
144,681 - CSW01_00785 0.74 -0.6
144,681 - CSW01_00785 0.74 -3.1
144,753 + CSW01_00785 0.80 -4.0
144,868 + -2.8
144,868 + +0.7
144,874 + -1.1
144,879 + -0.4
144,887 - +1.2
144,887 - +0.7
144,929 + +0.9
144,936 + -0.7
144,954 - +0.2
144,954 - +0.0
145,071 + -0.2
145,071 + -1.3
145,071 + -3.9
145,071 + +1.4
145,077 + +0.4
145,079 - -0.3
145,079 - +0.7
145,079 - +0.1
145,079 - -0.5
145,086 - +1.2
145,097 + -1.0
145,148 + +0.6
145,198 + -0.1
145,211 - +0.4
145,277 + -2.6
145,282 + +0.6
145,285 - -0.1
145,295 + -1.0
145,317 + -4.3
145,317 + +1.3
145,317 + +0.7
145,319 + +0.6
145,319 + -3.2
145,325 - -0.1
145,325 - -0.3
145,327 + +0.8
145,327 - -0.1
145,330 + -2.5
145,338 - +0.3
145,338 - -0.2
145,348 - -2.5
145,356 + -0.3
145,361 + -1.5
145,404 - -1.8
145,414 + +0.3
145,505 - +0.8
145,538 - +0.9
145,561 - CSW01_00790 0.10 -1.1
145,561 - CSW01_00790 0.10 +0.7
145,601 - CSW01_00790 0.13 +0.0
145,644 + CSW01_00790 0.15 -5.0
145,739 + CSW01_00790 0.20 +0.6
145,739 + CSW01_00790 0.20 +1.5
145,800 - CSW01_00790 0.23 -1.0
145,800 - CSW01_00790 0.23 -2.5
145,827 + CSW01_00790 0.25 +2.1
145,837 + CSW01_00790 0.25 -0.7
145,840 + CSW01_00790 0.26 +1.6
145,864 + CSW01_00790 0.27 +2.2
145,874 + CSW01_00790 0.27 +1.0
145,877 - CSW01_00790 0.28 +0.3
145,882 - CSW01_00790 0.28 -2.6
145,882 - CSW01_00790 0.28 +0.2
145,896 - CSW01_00790 0.29 -1.7
145,932 + CSW01_00790 0.31 +1.1

Or see this region's nucleotide sequence