Experiment: ICP3_phage_0.41_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00435 and CSW01_00440 are separated by 122 nucleotides CSW01_00440 and CSW01_00445 are separated by 44 nucleotides CSW01_00445 and CSW01_00450 are separated by 8 nucleotides
CSW01_00435: CSW01_00435 - EamA/RhaT family transporter, at 79,053 to 79,964
_00435
CSW01_00440: CSW01_00440 - DNA recombination protein RmuC, at 80,087 to 81,619
_00440
CSW01_00445: CSW01_00445 - ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 81,664 to 82,446
_00445
CSW01_00450: CSW01_00450 - SCP2 domain-containing protein, at 82,455 to 83,078
_00450
Position (kb) 80
81
82 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 79.104 kb on - strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.130 kb on + strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.138 kb on - strand at 79.163 kb on - strand, within CSW01_00435 at 79.185 kb on - strand, within CSW01_00435 at 79.239 kb on + strand, within CSW01_00435 at 79.242 kb on - strand, within CSW01_00435 at 79.266 kb on - strand, within CSW01_00435 at 79.331 kb on - strand, within CSW01_00435 at 79.360 kb on + strand, within CSW01_00435 at 79.368 kb on - strand, within CSW01_00435 at 79.374 kb on - strand, within CSW01_00435 at 79.410 kb on + strand, within CSW01_00435 at 79.427 kb on - strand, within CSW01_00435 at 79.437 kb on - strand, within CSW01_00435 at 79.462 kb on + strand, within CSW01_00435 at 79.467 kb on + strand, within CSW01_00435 at 79.474 kb on + strand, within CSW01_00435 at 79.475 kb on - strand, within CSW01_00435 at 79.475 kb on - strand, within CSW01_00435 at 79.475 kb on - strand, within CSW01_00435 at 79.482 kb on - strand, within CSW01_00435 at 79.482 kb on - strand, within CSW01_00435 at 79.484 kb on + strand, within CSW01_00435 at 79.490 kb on + strand, within CSW01_00435 at 79.490 kb on + strand, within CSW01_00435 at 79.492 kb on - strand, within CSW01_00435 at 79.498 kb on - strand, within CSW01_00435 at 79.498 kb on - strand, within CSW01_00435 at 79.515 kb on - strand, within CSW01_00435 at 79.609 kb on - strand, within CSW01_00435 at 79.632 kb on + strand, within CSW01_00435 at 79.633 kb on - strand, within CSW01_00435 at 79.639 kb on + strand, within CSW01_00435 at 79.696 kb on + strand, within CSW01_00435 at 79.712 kb on + strand, within CSW01_00435 at 79.720 kb on - strand, within CSW01_00435 at 79.786 kb on + strand, within CSW01_00435 at 79.786 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.787 kb on + strand, within CSW01_00435 at 79.792 kb on + strand, within CSW01_00435 at 79.795 kb on - strand, within CSW01_00435 at 79.795 kb on - strand, within CSW01_00435 at 79.800 kb on - strand, within CSW01_00435 at 79.800 kb on - strand, within CSW01_00435 at 79.832 kb on - strand, within CSW01_00435 at 79.868 kb on + strand, within CSW01_00435 at 79.876 kb on - strand at 79.876 kb on - strand at 79.876 kb on - strand at 79.876 kb on - strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.912 kb on + strand at 79.914 kb on - strand at 79.917 kb on + strand at 79.925 kb on - strand at 79.934 kb on + strand at 79.974 kb on + strand at 79.974 kb on + strand at 79.996 kb on + strand at 79.996 kb on + strand at 79.996 kb on + strand at 79.996 kb on + strand at 80.003 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.004 kb on - strand at 80.037 kb on - strand at 80.070 kb on - strand at 80.086 kb on - strand at 80.126 kb on + strand at 80.126 kb on + strand at 80.126 kb on + strand at 80.126 kb on + strand at 80.126 kb on + strand at 80.126 kb on + strand at 80.126 kb on + strand at 80.134 kb on - strand at 80.134 kb on - strand at 80.134 kb on - strand at 80.134 kb on - strand at 80.134 kb on - strand at 80.136 kb on + strand at 80.145 kb on + strand at 80.150 kb on - strand at 80.177 kb on - strand at 80.179 kb on + strand at 80.222 kb on - strand at 80.243 kb on - strand, within CSW01_00440 at 80.257 kb on + strand, within CSW01_00440 at 80.269 kb on + strand, within CSW01_00440 at 80.269 kb on + strand, within CSW01_00440 at 80.269 kb on + strand, within CSW01_00440 at 80.269 kb on + strand, within CSW01_00440 at 80.269 kb on + strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.277 kb on - strand, within CSW01_00440 at 80.307 kb on - strand, within CSW01_00440 at 80.361 kb on - strand, within CSW01_00440 at 80.377 kb on + strand, within CSW01_00440 at 80.382 kb on + strand, within CSW01_00440 at 80.382 kb on + strand, within CSW01_00440 at 80.382 kb on + strand, within CSW01_00440 at 80.385 kb on - strand, within CSW01_00440 at 80.390 kb on - strand, within CSW01_00440 at 80.390 kb on - strand, within CSW01_00440 at 80.530 kb on + strand, within CSW01_00440 at 80.538 kb on + strand, within CSW01_00440 at 80.538 kb on + strand, within CSW01_00440 at 80.538 kb on - strand, within CSW01_00440 at 80.550 kb on + strand, within CSW01_00440 at 80.550 kb on + strand, within CSW01_00440 at 80.601 kb on - strand, within CSW01_00440 at 80.615 kb on + strand, within CSW01_00440 at 80.647 kb on - strand, within CSW01_00440 at 80.647 kb on - strand, within CSW01_00440 at 80.652 kb on - strand, within CSW01_00440 at 80.665 kb on + strand, within CSW01_00440 at 80.665 kb on + strand, within CSW01_00440 at 80.686 kb on + strand, within CSW01_00440 at 80.709 kb on + strand, within CSW01_00440 at 80.709 kb on + strand, within CSW01_00440 at 80.711 kb on + strand, within CSW01_00440 at 80.711 kb on + strand, within CSW01_00440 at 80.711 kb on + strand, within CSW01_00440 at 80.719 kb on - strand, within CSW01_00440 at 80.719 kb on - strand, within CSW01_00440 at 80.720 kb on + strand, within CSW01_00440 at 80.727 kb on + strand, within CSW01_00440 at 80.741 kb on - strand, within CSW01_00440 at 80.757 kb on + strand, within CSW01_00440 at 80.757 kb on + strand, within CSW01_00440 at 80.765 kb on - strand, within CSW01_00440 at 80.765 kb on - strand, within CSW01_00440 at 80.765 kb on - strand, within CSW01_00440 at 80.765 kb on - strand, within CSW01_00440 at 80.765 kb on - strand, within CSW01_00440 at 80.854 kb on - strand, within CSW01_00440 at 80.854 kb on - strand, within CSW01_00440 at 80.868 kb on + strand, within CSW01_00440 at 80.868 kb on + strand, within CSW01_00440 at 80.868 kb on + strand, within CSW01_00440 at 80.876 kb on - strand, within CSW01_00440 at 80.900 kb on + strand, within CSW01_00440 at 80.908 kb on - strand, within CSW01_00440 at 80.926 kb on + strand, within CSW01_00440 at 81.012 kb on - strand, within CSW01_00440 at 81.042 kb on - strand, within CSW01_00440 at 81.080 kb on - strand, within CSW01_00440 at 81.090 kb on + strand, within CSW01_00440 at 81.099 kb on + strand, within CSW01_00440 at 81.124 kb on + strand, within CSW01_00440 at 81.214 kb on + strand, within CSW01_00440 at 81.214 kb on + strand, within CSW01_00440 at 81.222 kb on - strand, within CSW01_00440 at 81.233 kb on - strand, within CSW01_00440 at 81.235 kb on + strand, within CSW01_00440 at 81.260 kb on + strand, within CSW01_00440 at 81.272 kb on + strand, within CSW01_00440 at 81.282 kb on + strand, within CSW01_00440 at 81.282 kb on + strand, within CSW01_00440 at 81.300 kb on - strand, within CSW01_00440 at 81.328 kb on + strand, within CSW01_00440 at 81.328 kb on + strand, within CSW01_00440 at 81.336 kb on - strand, within CSW01_00440 at 81.360 kb on - strand, within CSW01_00440 at 81.360 kb on - strand, within CSW01_00440 at 81.375 kb on - strand, within CSW01_00440 at 81.392 kb on + strand, within CSW01_00440 at 81.392 kb on + strand, within CSW01_00440 at 81.392 kb on + strand, within CSW01_00440 at 81.392 kb on + strand, within CSW01_00440 at 81.400 kb on - strand, within CSW01_00440 at 81.409 kb on + strand, within CSW01_00440 at 81.409 kb on + strand, within CSW01_00440 at 81.409 kb on + strand, within CSW01_00440 at 81.409 kb on + strand, within CSW01_00440 at 81.409 kb on + strand, within CSW01_00440 at 81.409 kb on + strand, within CSW01_00440 at 81.414 kb on + strand, within CSW01_00440 at 81.417 kb on - strand, within CSW01_00440 at 81.417 kb on - strand, within CSW01_00440 at 81.417 kb on - strand, within CSW01_00440 at 81.437 kb on - strand, within CSW01_00440 at 81.437 kb on - strand, within CSW01_00440 at 81.448 kb on + strand, within CSW01_00440 at 81.456 kb on - strand, within CSW01_00440 at 81.489 kb on + strand at 81.497 kb on - strand at 81.497 kb on - strand at 81.532 kb on + strand at 81.559 kb on - strand at 81.592 kb on - strand at 82.526 kb on + strand, within CSW01_00450
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1 remove 79,104 - -0.8 79,130 + -0.1 79,130 + -3.8 79,130 + -3.0 79,130 + -2.8 79,130 + -0.3 79,130 + -3.8 79,130 + -0.6 79,130 + +1.1 79,130 + -3.2 79,130 + +0.2 79,130 + -3.5 79,138 - -0.1 79,138 - +0.2 79,138 - +1.8 79,138 - +1.3 79,138 - -4.2 79,138 - -4.7 79,163 - CSW01_00435 0.12 +1.2 79,185 - CSW01_00435 0.14 +2.0 79,239 + CSW01_00435 0.20 +1.3 79,242 - CSW01_00435 0.21 +0.3 79,266 - CSW01_00435 0.23 +0.8 79,331 - CSW01_00435 0.30 +1.0 79,360 + CSW01_00435 0.34 -3.1 79,368 - CSW01_00435 0.35 -0.7 79,374 - CSW01_00435 0.35 +1.4 79,410 + CSW01_00435 0.39 +0.6 79,427 - CSW01_00435 0.41 -1.6 79,437 - CSW01_00435 0.42 -1.0 79,462 + CSW01_00435 0.45 +0.5 79,467 + CSW01_00435 0.45 -4.0 79,474 + CSW01_00435 0.46 -0.8 79,475 - CSW01_00435 0.46 -0.8 79,475 - CSW01_00435 0.46 +0.4 79,475 - CSW01_00435 0.46 -3.9 79,482 - CSW01_00435 0.47 -1.2 79,482 - CSW01_00435 0.47 -3.9 79,484 + CSW01_00435 0.47 +0.8 79,490 + CSW01_00435 0.48 +0.1 79,490 + CSW01_00435 0.48 -0.6 79,492 - CSW01_00435 0.48 -0.6 79,498 - CSW01_00435 0.49 -0.1 79,498 - CSW01_00435 0.49 +0.2 79,515 - CSW01_00435 0.51 -1.0 79,609 - CSW01_00435 0.61 -0.1 79,632 + CSW01_00435 0.63 -0.5 79,633 - CSW01_00435 0.64 -0.1 79,639 + CSW01_00435 0.64 -2.7 79,696 + CSW01_00435 0.71 -3.1 79,712 + CSW01_00435 0.72 +0.3 79,720 - CSW01_00435 0.73 -3.9 79,786 + CSW01_00435 0.80 -2.8 79,786 + CSW01_00435 0.80 +1.5 79,787 + CSW01_00435 0.80 +0.6 79,787 + CSW01_00435 0.80 +2.2 79,787 + CSW01_00435 0.80 +0.7 79,787 + CSW01_00435 0.80 -2.3 79,787 + CSW01_00435 0.80 -0.7 79,787 + CSW01_00435 0.80 -2.9 79,787 + CSW01_00435 0.80 -5.1 79,787 + CSW01_00435 0.80 +0.1 79,787 + CSW01_00435 0.80 +1.3 79,787 + CSW01_00435 0.80 -2.8 79,787 + CSW01_00435 0.80 +0.3 79,787 + CSW01_00435 0.80 -3.3 79,787 + CSW01_00435 0.80 +2.3 79,792 + CSW01_00435 0.81 -0.5 79,795 - CSW01_00435 0.81 -2.6 79,795 - CSW01_00435 0.81 +0.3 79,800 - CSW01_00435 0.82 -3.0 79,800 - CSW01_00435 0.82 -2.4 79,832 - CSW01_00435 0.85 -4.4 79,868 + CSW01_00435 0.89 -0.2 79,876 - -0.9 79,876 - -1.8 79,876 - +0.8 79,876 - -4.0 79,912 + +0.4 79,912 + +0.5 79,912 + +1.7 79,912 + +0.2 79,912 + +0.4 79,912 + -0.4 79,914 - -3.4 79,917 + -5.8 79,925 - +1.2 79,934 + -2.8 79,974 + -1.3 79,974 + -2.1 79,996 + +0.4 79,996 + +0.7 79,996 + -0.7 79,996 + +0.4 80,003 - -2.1 80,004 - -1.7 80,004 - +0.7 80,004 - +1.4 80,037 - -0.2 80,070 - +0.6 80,086 - +0.7 80,126 + -1.0 80,126 + -1.3 80,126 + -0.3 80,126 + -4.8 80,126 + -1.7 80,126 + +0.2 80,126 + -1.2 80,134 - +0.3 80,134 - -1.9 80,134 - +0.1 80,134 - +1.2 80,134 - +0.7 80,136 + +1.8 80,145 + -1.4 80,150 - -2.0 80,177 - +0.7 80,179 + -1.8 80,222 - -4.0 80,243 - CSW01_00440 0.10 +2.8 80,257 + CSW01_00440 0.11 +0.1 80,269 + CSW01_00440 0.12 -3.0 80,269 + CSW01_00440 0.12 -0.4 80,269 + CSW01_00440 0.12 -2.0 80,269 + CSW01_00440 0.12 -3.9 80,269 + CSW01_00440 0.12 +2.2 80,277 - CSW01_00440 0.12 -1.8 80,277 - CSW01_00440 0.12 -0.6 80,277 - CSW01_00440 0.12 +0.7 80,277 - CSW01_00440 0.12 -3.3 80,277 - CSW01_00440 0.12 +0.2 80,277 - CSW01_00440 0.12 -1.5 80,277 - CSW01_00440 0.12 -1.8 80,277 - CSW01_00440 0.12 -0.3 80,277 - CSW01_00440 0.12 +0.2 80,277 - CSW01_00440 0.12 -0.7 80,277 - CSW01_00440 0.12 +1.3 80,277 - CSW01_00440 0.12 +0.2 80,277 - CSW01_00440 0.12 +1.2 80,277 - CSW01_00440 0.12 +0.1 80,277 - CSW01_00440 0.12 +0.8 80,277 - CSW01_00440 0.12 +0.7 80,277 - CSW01_00440 0.12 +1.2 80,277 - CSW01_00440 0.12 +1.2 80,307 - CSW01_00440 0.14 -0.0 80,361 - CSW01_00440 0.18 +1.1 80,377 + CSW01_00440 0.19 +1.9 80,382 + CSW01_00440 0.19 -2.8 80,382 + CSW01_00440 0.19 +0.4 80,382 + CSW01_00440 0.19 +0.0 80,385 - CSW01_00440 0.19 -2.8 80,390 - CSW01_00440 0.20 -3.8 80,390 - CSW01_00440 0.20 -3.1 80,530 + CSW01_00440 0.29 -3.0 80,538 + CSW01_00440 0.29 +0.9 80,538 + CSW01_00440 0.29 +0.2 80,538 - CSW01_00440 0.29 -0.0 80,550 + CSW01_00440 0.30 -0.2 80,550 + CSW01_00440 0.30 -3.0 80,601 - CSW01_00440 0.34 -0.0 80,615 + CSW01_00440 0.34 -0.4 80,647 - CSW01_00440 0.37 -0.3 80,647 - CSW01_00440 0.37 -3.7 80,652 - CSW01_00440 0.37 -0.2 80,665 + CSW01_00440 0.38 +1.0 80,665 + CSW01_00440 0.38 -0.5 80,686 + CSW01_00440 0.39 -0.3 80,709 + CSW01_00440 0.41 -1.4 80,709 + CSW01_00440 0.41 -3.3 80,711 + CSW01_00440 0.41 -2.3 80,711 + CSW01_00440 0.41 +0.3 80,711 + CSW01_00440 0.41 +0.7 80,719 - CSW01_00440 0.41 +0.4 80,719 - CSW01_00440 0.41 -0.1 80,720 + CSW01_00440 0.41 -1.8 80,727 + CSW01_00440 0.42 +2.3 80,741 - CSW01_00440 0.43 -0.4 80,757 + CSW01_00440 0.44 +1.1 80,757 + CSW01_00440 0.44 -2.0 80,765 - CSW01_00440 0.44 +0.7 80,765 - CSW01_00440 0.44 +0.5 80,765 - CSW01_00440 0.44 -2.0 80,765 - CSW01_00440 0.44 -3.1 80,765 - CSW01_00440 0.44 +0.8 80,854 - CSW01_00440 0.50 -3.5 80,854 - CSW01_00440 0.50 -0.1 80,868 + CSW01_00440 0.51 -2.0 80,868 + CSW01_00440 0.51 -1.2 80,868 + CSW01_00440 0.51 +1.4 80,876 - CSW01_00440 0.51 -1.3 80,900 + CSW01_00440 0.53 -0.9 80,908 - CSW01_00440 0.54 +1.7 80,926 + CSW01_00440 0.55 +1.2 81,012 - CSW01_00440 0.60 -0.7 81,042 - CSW01_00440 0.62 -1.1 81,080 - CSW01_00440 0.65 -0.3 81,090 + CSW01_00440 0.65 -2.5 81,099 + CSW01_00440 0.66 -3.3 81,124 + CSW01_00440 0.68 -0.1 81,214 + CSW01_00440 0.74 +0.9 81,214 + CSW01_00440 0.74 -2.5 81,222 - CSW01_00440 0.74 -0.1 81,233 - CSW01_00440 0.75 -1.5 81,235 + CSW01_00440 0.75 -1.0 81,260 + CSW01_00440 0.77 -0.7 81,272 + CSW01_00440 0.77 +1.5 81,282 + CSW01_00440 0.78 +1.4 81,282 + CSW01_00440 0.78 -0.3 81,300 - CSW01_00440 0.79 -0.0 81,328 + CSW01_00440 0.81 -4.1 81,328 + CSW01_00440 0.81 -0.6 81,336 - CSW01_00440 0.81 +1.3 81,360 - CSW01_00440 0.83 -2.1 81,360 - CSW01_00440 0.83 -1.0 81,375 - CSW01_00440 0.84 -4.6 81,392 + CSW01_00440 0.85 +0.6 81,392 + CSW01_00440 0.85 -1.0 81,392 + CSW01_00440 0.85 -0.5 81,392 + CSW01_00440 0.85 +0.4 81,400 - CSW01_00440 0.86 -2.1 81,409 + CSW01_00440 0.86 -0.1 81,409 + CSW01_00440 0.86 -3.4 81,409 + CSW01_00440 0.86 -1.1 81,409 + CSW01_00440 0.86 -0.7 81,409 + CSW01_00440 0.86 -1.3 81,409 + CSW01_00440 0.86 +0.5 81,414 + CSW01_00440 0.87 -2.0 81,417 - CSW01_00440 0.87 -1.0 81,417 - CSW01_00440 0.87 -6.1 81,417 - CSW01_00440 0.87 +0.7 81,437 - CSW01_00440 0.88 -3.1 81,437 - CSW01_00440 0.88 +1.8 81,448 + CSW01_00440 0.89 +0.7 81,456 - CSW01_00440 0.89 +2.0 81,489 + -0.3 81,497 - +0.1 81,497 - -2.5 81,532 + -0.8 81,559 - +0.1 81,592 - -0.4 82,526 + CSW01_00450 0.11 -1.8
Or see this region's nucleotide sequence