Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00220

Experiment: ICP3_phage_0.41_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00215 and CSW01_00220 are separated by 11 nucleotidesCSW01_00220 and CSW01_00225 are separated by 61 nucleotides CSW01_00215: CSW01_00215 - potassium uptake protein TrkH, at 39,103 to 40,548 _00215 CSW01_00220: CSW01_00220 - Trk system potassium transporter TrkA, at 40,560 to 41,936 _00220 CSW01_00225: CSW01_00225 - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 41,998 to 43,278 _00225 Position (kb) 40 41 42Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 39.560 kb on + strand, within CSW01_00215at 39.629 kb on + strand, within CSW01_00215at 39.637 kb on - strand, within CSW01_00215at 39.687 kb on + strand, within CSW01_00215at 39.693 kb on - strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.796 kb on + strand, within CSW01_00215at 39.833 kb on + strand, within CSW01_00215at 39.833 kb on + strand, within CSW01_00215at 39.833 kb on + strand, within CSW01_00215at 39.846 kb on - strand, within CSW01_00215at 39.873 kb on + strand, within CSW01_00215at 39.877 kb on + strand, within CSW01_00215at 39.940 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.040 kb on - strand, within CSW01_00215at 40.044 kb on - strand, within CSW01_00215at 40.074 kb on + strand, within CSW01_00215at 40.081 kb on - strand, within CSW01_00215at 40.088 kb on + strand, within CSW01_00215at 40.130 kb on - strand, within CSW01_00215at 40.196 kb on + strand, within CSW01_00215at 40.206 kb on + strand, within CSW01_00215at 40.211 kb on - strand, within CSW01_00215at 40.211 kb on - strand, within CSW01_00215at 40.263 kb on - strand, within CSW01_00215at 40.481 kb on + strandat 40.491 kb on + strandat 40.504 kb on - strandat 40.506 kb on + strandat 40.506 kb on + strandat 40.506 kb on + strandat 40.514 kb on - strandat 40.514 kb on - strandat 40.524 kb on + strandat 40.548 kb on - strandat 40.558 kb on - strandat 40.558 kb on - strandat 41.960 kb on + strandat 41.962 kb on + strandat 41.967 kb on + strandat 41.968 kb on - strandat 41.968 kb on - strandat 41.975 kb on - strandat 41.981 kb on + strandat 41.984 kb on - strandat 42.004 kb on - strandat 42.010 kb on + strandat 42.097 kb on + strandat 42.102 kb on + strandat 42.125 kb on + strandat 42.125 kb on + strandat 42.125 kb on + strandat 42.125 kb on + strandat 42.133 kb on - strand, within CSW01_00225at 42.133 kb on - strand, within CSW01_00225at 42.133 kb on - strand, within CSW01_00225at 42.133 kb on - strand, within CSW01_00225at 42.138 kb on - strand, within CSW01_00225at 42.142 kb on - strand, within CSW01_00225at 42.175 kb on + strand, within CSW01_00225at 42.191 kb on + strand, within CSW01_00225at 42.191 kb on + strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.199 kb on - strand, within CSW01_00225at 42.337 kb on + strand, within CSW01_00225at 42.363 kb on + strand, within CSW01_00225at 42.391 kb on - strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.405 kb on + strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.413 kb on - strand, within CSW01_00225at 42.428 kb on - strand, within CSW01_00225at 42.434 kb on + strand, within CSW01_00225at 42.442 kb on - strand, within CSW01_00225at 42.483 kb on - strand, within CSW01_00225at 42.558 kb on + strand, within CSW01_00225at 42.558 kb on + strand, within CSW01_00225at 42.563 kb on + strand, within CSW01_00225at 42.566 kb on - strand, within CSW01_00225at 42.568 kb on + strand, within CSW01_00225at 42.576 kb on - strand, within CSW01_00225at 42.576 kb on - strand, within CSW01_00225at 42.577 kb on + strand, within CSW01_00225at 42.592 kb on + strand, within CSW01_00225at 42.592 kb on + strand, within CSW01_00225at 42.592 kb on + strand, within CSW01_00225at 42.600 kb on - strand, within CSW01_00225at 42.712 kb on + strand, within CSW01_00225at 42.719 kb on + strand, within CSW01_00225at 42.719 kb on + strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.727 kb on - strand, within CSW01_00225at 42.744 kb on - strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.810 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.815 kb on + strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.818 kb on - strand, within CSW01_00225at 42.821 kb on - strand, within CSW01_00225at 42.823 kb on - strand, within CSW01_00225at 42.865 kb on - strand, within CSW01_00225at 42.900 kb on - strand, within CSW01_00225at 42.917 kb on + strand, within CSW01_00225at 42.917 kb on + strand, within CSW01_00225at 42.919 kb on - strand, within CSW01_00225at 42.922 kb on + strand, within CSW01_00225

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_0.41_MOI_rep1
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39,560 + CSW01_00215 0.32 +0.6
39,629 + CSW01_00215 0.36 -3.1
39,637 - CSW01_00215 0.37 +2.1
39,687 + CSW01_00215 0.40 +1.9
39,693 - CSW01_00215 0.41 -0.1
39,749 + CSW01_00215 0.45 +1.3
39,749 + CSW01_00215 0.45 +0.2
39,749 + CSW01_00215 0.45 +0.8
39,749 + CSW01_00215 0.45 +1.2
39,749 + CSW01_00215 0.45 +2.2
39,757 - CSW01_00215 0.45 +2.2
39,757 - CSW01_00215 0.45 +1.5
39,757 - CSW01_00215 0.45 -0.2
39,757 - CSW01_00215 0.45 -2.5
39,796 + CSW01_00215 0.48 +0.3
39,833 + CSW01_00215 0.50 +0.9
39,833 + CSW01_00215 0.50 -1.1
39,833 + CSW01_00215 0.50 +1.6
39,846 - CSW01_00215 0.51 +3.3
39,873 + CSW01_00215 0.53 +0.3
39,877 + CSW01_00215 0.54 +1.8
39,940 + CSW01_00215 0.58 -2.1
40,036 + CSW01_00215 0.65 +1.0
40,036 + CSW01_00215 0.65 +1.1
40,036 + CSW01_00215 0.65 -1.5
40,036 + CSW01_00215 0.65 +1.5
40,040 - CSW01_00215 0.65 +1.4
40,044 - CSW01_00215 0.65 +1.1
40,074 + CSW01_00215 0.67 +1.4
40,081 - CSW01_00215 0.68 -0.2
40,088 + CSW01_00215 0.68 +1.1
40,130 - CSW01_00215 0.71 +1.6
40,196 + CSW01_00215 0.76 +1.3
40,206 + CSW01_00215 0.76 +0.9
40,211 - CSW01_00215 0.77 +1.9
40,211 - CSW01_00215 0.77 -1.4
40,263 - CSW01_00215 0.80 +1.2
40,481 + +2.1
40,491 + +0.4
40,504 - +0.5
40,506 + +1.5
40,506 + +2.9
40,506 + -1.3
40,514 - +1.6
40,514 - +2.2
40,524 + +3.2
40,548 - +0.5
40,558 - +2.6
40,558 - -1.4
41,960 + +1.7
41,962 + +2.7
41,967 + +1.4
41,968 - +0.8
41,968 - -3.0
41,975 - +0.0
41,981 + -3.7
41,984 - +0.4
42,004 - +0.6
42,010 + +1.5
42,097 + +1.6
42,102 + +0.3
42,125 + +1.5
42,125 + +0.5
42,125 + +2.8
42,125 + -2.3
42,133 - CSW01_00225 0.11 -1.7
42,133 - CSW01_00225 0.11 -3.0
42,133 - CSW01_00225 0.11 -0.5
42,133 - CSW01_00225 0.11 -0.3
42,138 - CSW01_00225 0.11 +0.4
42,142 - CSW01_00225 0.11 +0.6
42,175 + CSW01_00225 0.14 -2.8
42,191 + CSW01_00225 0.15 +2.4
42,191 + CSW01_00225 0.15 +3.7
42,199 - CSW01_00225 0.16 -0.7
42,199 - CSW01_00225 0.16 -2.0
42,199 - CSW01_00225 0.16 +0.3
42,199 - CSW01_00225 0.16 +0.7
42,199 - CSW01_00225 0.16 +1.4
42,199 - CSW01_00225 0.16 -1.0
42,337 + CSW01_00225 0.26 -0.1
42,363 + CSW01_00225 0.28 -0.7
42,391 - CSW01_00225 0.31 +0.7
42,405 + CSW01_00225 0.32 +0.7
42,405 + CSW01_00225 0.32 +1.1
42,405 + CSW01_00225 0.32 -2.7
42,405 + CSW01_00225 0.32 +2.2
42,405 + CSW01_00225 0.32 -2.0
42,413 - CSW01_00225 0.32 +1.9
42,413 - CSW01_00225 0.32 -0.3
42,413 - CSW01_00225 0.32 +0.4
42,413 - CSW01_00225 0.32 -0.7
42,413 - CSW01_00225 0.32 -0.5
42,413 - CSW01_00225 0.32 -4.2
42,413 - CSW01_00225 0.32 -0.3
42,428 - CSW01_00225 0.34 -0.0
42,434 + CSW01_00225 0.34 +0.2
42,442 - CSW01_00225 0.35 +2.2
42,483 - CSW01_00225 0.38 -3.8
42,558 + CSW01_00225 0.44 +0.5
42,558 + CSW01_00225 0.44 -2.6
42,563 + CSW01_00225 0.44 -0.7
42,566 - CSW01_00225 0.44 +0.6
42,568 + CSW01_00225 0.44 -4.1
42,576 - CSW01_00225 0.45 -0.8
42,576 - CSW01_00225 0.45 +0.8
42,577 + CSW01_00225 0.45 +0.4
42,592 + CSW01_00225 0.46 -0.3
42,592 + CSW01_00225 0.46 +3.3
42,592 + CSW01_00225 0.46 +0.3
42,600 - CSW01_00225 0.47 +0.2
42,712 + CSW01_00225 0.56 -0.5
42,719 + CSW01_00225 0.56 +0.2
42,719 + CSW01_00225 0.56 -1.0
42,727 - CSW01_00225 0.57 -2.8
42,727 - CSW01_00225 0.57 -1.0
42,727 - CSW01_00225 0.57 -2.1
42,727 - CSW01_00225 0.57 -5.2
42,744 - CSW01_00225 0.58 -3.7
42,810 + CSW01_00225 0.63 -2.0
42,810 + CSW01_00225 0.63 -1.7
42,810 + CSW01_00225 0.63 -3.5
42,810 + CSW01_00225 0.63 +1.2
42,810 + CSW01_00225 0.63 -1.2
42,810 + CSW01_00225 0.63 -1.4
42,810 + CSW01_00225 0.63 +1.0
42,810 + CSW01_00225 0.63 +0.0
42,815 + CSW01_00225 0.64 -3.7
42,815 + CSW01_00225 0.64 -0.6
42,815 + CSW01_00225 0.64 +0.2
42,815 + CSW01_00225 0.64 -4.7
42,818 - CSW01_00225 0.64 -2.1
42,818 - CSW01_00225 0.64 +0.0
42,818 - CSW01_00225 0.64 -2.6
42,818 - CSW01_00225 0.64 -2.0
42,818 - CSW01_00225 0.64 -0.6
42,818 - CSW01_00225 0.64 -3.1
42,818 - CSW01_00225 0.64 -3.1
42,818 - CSW01_00225 0.64 -0.7
42,818 - CSW01_00225 0.64 -1.6
42,818 - CSW01_00225 0.64 -5.1
42,818 - CSW01_00225 0.64 +1.0
42,818 - CSW01_00225 0.64 +0.8
42,818 - CSW01_00225 0.64 +1.7
42,818 - CSW01_00225 0.64 -0.4
42,821 - CSW01_00225 0.64 -3.7
42,823 - CSW01_00225 0.64 +0.9
42,865 - CSW01_00225 0.68 +1.4
42,900 - CSW01_00225 0.70 -0.8
42,917 + CSW01_00225 0.72 -0.7
42,917 + CSW01_00225 0.72 +0.6
42,919 - CSW01_00225 0.72 -1.3
42,922 + CSW01_00225 0.72 -0.1

Or see this region's nucleotide sequence