Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13160

Experiment: Recovery broth with Nitrofurantoin 0.05 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS13150 and BBR_RS13155 are separated by 113 nucleotidesBBR_RS13155 and BBR_RS13160 are separated by 123 nucleotidesBBR_RS13160 and BBR_RS13165 are separated by 56 nucleotides BBR_RS13150: BBR_RS13150 - DNA helicase RecQ, at 725,884 to 727,803 _RS13150 BBR_RS13155: BBR_RS13155 - S-ribosylhomocysteine lyase, at 727,917 to 728,411 _RS13155 BBR_RS13160: BBR_RS13160 - serine O-acetyltransferase, at 728,535 to 729,077 _RS13160 BBR_RS13165: BBR_RS13165 - amino acid permease, at 729,134 to 730,591 _RS13165 Position (kb) 728 729 730Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 727.537 kb on - strand, within BBR_RS13150at 727.551 kb on - strand, within BBR_RS13150at 727.558 kb on - strand, within BBR_RS13150at 727.600 kb on - strand, within BBR_RS13150at 727.720 kb on + strandat 727.721 kb on + strandat 727.736 kb on + strandat 727.840 kb on + strandat 727.840 kb on + strandat 727.863 kb on - strandat 727.871 kb on + strandat 727.871 kb on + strandat 727.871 kb on + strandat 727.933 kb on - strandat 727.960 kb on + strandat 727.964 kb on + strandat 727.968 kb on - strand, within BBR_RS13155at 727.976 kb on + strand, within BBR_RS13155at 727.976 kb on + strand, within BBR_RS13155at 728.096 kb on + strand, within BBR_RS13155at 728.101 kb on + strand, within BBR_RS13155at 728.101 kb on + strand, within BBR_RS13155at 728.101 kb on + strand, within BBR_RS13155at 728.111 kb on + strand, within BBR_RS13155at 728.113 kb on + strand, within BBR_RS13155at 728.195 kb on + strand, within BBR_RS13155at 728.212 kb on + strand, within BBR_RS13155at 728.212 kb on + strand, within BBR_RS13155at 728.233 kb on - strand, within BBR_RS13155at 728.269 kb on - strand, within BBR_RS13155at 728.283 kb on - strand, within BBR_RS13155at 728.295 kb on + strand, within BBR_RS13155at 728.303 kb on + strand, within BBR_RS13155at 728.308 kb on + strand, within BBR_RS13155at 728.345 kb on + strand, within BBR_RS13155at 728.353 kb on - strand, within BBR_RS13155at 728.358 kb on - strand, within BBR_RS13155at 728.405 kb on + strandat 728.413 kb on - strandat 728.423 kb on - strandat 728.423 kb on - strandat 728.434 kb on - strandat 728.441 kb on - strandat 728.443 kb on - strandat 728.468 kb on - strandat 728.470 kb on + strandat 728.503 kb on - strandat 728.529 kb on - strandat 728.533 kb on + strandat 728.569 kb on - strandat 728.618 kb on + strand, within BBR_RS13160at 728.640 kb on - strand, within BBR_RS13160at 728.640 kb on - strand, within BBR_RS13160at 728.650 kb on - strand, within BBR_RS13160at 728.673 kb on - strand, within BBR_RS13160at 728.681 kb on - strand, within BBR_RS13160at 728.681 kb on - strand, within BBR_RS13160at 728.713 kb on + strand, within BBR_RS13160at 728.721 kb on - strand, within BBR_RS13160at 728.728 kb on - strand, within BBR_RS13160at 728.730 kb on + strand, within BBR_RS13160at 728.730 kb on + strand, within BBR_RS13160at 728.736 kb on - strand, within BBR_RS13160at 728.736 kb on - strand, within BBR_RS13160at 728.738 kb on - strand, within BBR_RS13160at 728.775 kb on - strand, within BBR_RS13160at 728.782 kb on + strand, within BBR_RS13160at 728.793 kb on + strand, within BBR_RS13160at 728.816 kb on + strand, within BBR_RS13160at 728.895 kb on + strand, within BBR_RS13160at 728.942 kb on + strand, within BBR_RS13160at 728.960 kb on + strand, within BBR_RS13160at 728.968 kb on - strand, within BBR_RS13160at 728.968 kb on - strand, within BBR_RS13160at 728.968 kb on - strand, within BBR_RS13160at 729.110 kb on - strandat 729.132 kb on + strandat 729.132 kb on + strandat 729.140 kb on - strandat 729.150 kb on + strandat 729.158 kb on - strandat 729.170 kb on - strandat 729.170 kb on - strandat 729.262 kb on - strandat 729.296 kb on + strand, within BBR_RS13165at 729.301 kb on - strand, within BBR_RS13165at 729.313 kb on - strand, within BBR_RS13165at 729.328 kb on + strand, within BBR_RS13165at 729.328 kb on + strand, within BBR_RS13165at 729.336 kb on - strand, within BBR_RS13165at 729.366 kb on + strand, within BBR_RS13165at 729.432 kb on + strand, within BBR_RS13165at 729.493 kb on + strand, within BBR_RS13165at 729.493 kb on + strand, within BBR_RS13165at 729.501 kb on + strand, within BBR_RS13165at 729.502 kb on - strand, within BBR_RS13165at 729.509 kb on - strand, within BBR_RS13165at 729.509 kb on - strand, within BBR_RS13165at 729.509 kb on - strand, within BBR_RS13165at 729.511 kb on + strand, within BBR_RS13165at 729.513 kb on + strand, within BBR_RS13165at 729.513 kb on + strand, within BBR_RS13165at 729.521 kb on - strand, within BBR_RS13165at 729.545 kb on + strand, within BBR_RS13165at 729.582 kb on + strand, within BBR_RS13165at 729.590 kb on - strand, within BBR_RS13165at 729.590 kb on - strand, within BBR_RS13165at 729.600 kb on - strand, within BBR_RS13165at 729.619 kb on + strand, within BBR_RS13165at 729.655 kb on + strand, within BBR_RS13165at 729.655 kb on + strand, within BBR_RS13165at 729.663 kb on - strand, within BBR_RS13165at 729.665 kb on + strand, within BBR_RS13165at 729.718 kb on - strand, within BBR_RS13165at 729.733 kb on + strand, within BBR_RS13165at 729.733 kb on + strand, within BBR_RS13165at 729.736 kb on - strand, within BBR_RS13165at 729.741 kb on - strand, within BBR_RS13165at 729.777 kb on + strand, within BBR_RS13165at 729.779 kb on + strand, within BBR_RS13165at 729.779 kb on + strand, within BBR_RS13165at 729.779 kb on + strand, within BBR_RS13165at 729.788 kb on - strand, within BBR_RS13165at 729.794 kb on + strand, within BBR_RS13165at 729.846 kb on - strand, within BBR_RS13165at 729.846 kb on - strand, within BBR_RS13165at 729.928 kb on - strand, within BBR_RS13165at 729.997 kb on - strand, within BBR_RS13165at 730.020 kb on - strand, within BBR_RS13165at 730.066 kb on + strand, within BBR_RS13165at 730.070 kb on - strand, within BBR_RS13165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Nitrofurantoin 0.05 mM
remove
727,537 - BBR_RS13150 0.86 +0.1
727,551 - BBR_RS13150 0.87 -0.0
727,558 - BBR_RS13150 0.87 +1.6
727,600 - BBR_RS13150 0.89 +1.0
727,720 + -0.5
727,721 + +0.5
727,736 + -0.4
727,840 + +1.8
727,840 + +0.1
727,863 - +0.3
727,871 + -1.2
727,871 + -0.8
727,871 + +0.1
727,933 - +0.8
727,960 + +0.1
727,964 + +0.3
727,968 - BBR_RS13155 0.10 -1.3
727,976 + BBR_RS13155 0.12 +0.7
727,976 + BBR_RS13155 0.12 +0.5
728,096 + BBR_RS13155 0.36 +2.2
728,101 + BBR_RS13155 0.37 -1.0
728,101 + BBR_RS13155 0.37 +0.2
728,101 + BBR_RS13155 0.37 -1.3
728,111 + BBR_RS13155 0.39 +0.2
728,113 + BBR_RS13155 0.40 -0.1
728,195 + BBR_RS13155 0.56 -0.3
728,212 + BBR_RS13155 0.60 +0.7
728,212 + BBR_RS13155 0.60 +0.1
728,233 - BBR_RS13155 0.64 +0.7
728,269 - BBR_RS13155 0.71 +0.7
728,283 - BBR_RS13155 0.74 -1.7
728,295 + BBR_RS13155 0.76 +0.3
728,303 + BBR_RS13155 0.78 +0.4
728,308 + BBR_RS13155 0.79 +2.3
728,345 + BBR_RS13155 0.86 +1.1
728,353 - BBR_RS13155 0.88 +0.2
728,358 - BBR_RS13155 0.89 -1.8
728,405 + -0.9
728,413 - +0.3
728,423 - -2.2
728,423 - +0.2
728,434 - -0.3
728,441 - +2.0
728,443 - +0.1
728,468 - -0.1
728,470 + +0.1
728,503 - -0.4
728,529 - -0.8
728,533 + +1.1
728,569 - -0.2
728,618 + BBR_RS13160 0.15 +1.4
728,640 - BBR_RS13160 0.19 +0.2
728,640 - BBR_RS13160 0.19 +1.2
728,650 - BBR_RS13160 0.21 +1.1
728,673 - BBR_RS13160 0.25 -0.8
728,681 - BBR_RS13160 0.27 +1.6
728,681 - BBR_RS13160 0.27 +0.3
728,713 + BBR_RS13160 0.33 +4.3
728,721 - BBR_RS13160 0.34 +1.9
728,728 - BBR_RS13160 0.36 +0.8
728,730 + BBR_RS13160 0.36 -0.9
728,730 + BBR_RS13160 0.36 +1.2
728,736 - BBR_RS13160 0.37 -0.4
728,736 - BBR_RS13160 0.37 +0.5
728,738 - BBR_RS13160 0.37 +0.4
728,775 - BBR_RS13160 0.44 -1.5
728,782 + BBR_RS13160 0.45 +1.5
728,793 + BBR_RS13160 0.48 +2.2
728,816 + BBR_RS13160 0.52 +0.3
728,895 + BBR_RS13160 0.66 +0.4
728,942 + BBR_RS13160 0.75 -0.9
728,960 + BBR_RS13160 0.78 +1.3
728,968 - BBR_RS13160 0.80 +1.6
728,968 - BBR_RS13160 0.80 +0.4
728,968 - BBR_RS13160 0.80 -0.3
729,110 - -0.6
729,132 + +0.7
729,132 + +0.6
729,140 - +0.5
729,150 + -1.0
729,158 - +0.5
729,170 - -0.0
729,170 - -0.9
729,262 - -0.3
729,296 + BBR_RS13165 0.11 +1.1
729,301 - BBR_RS13165 0.11 -1.3
729,313 - BBR_RS13165 0.12 +0.6
729,328 + BBR_RS13165 0.13 +0.8
729,328 + BBR_RS13165 0.13 +0.2
729,336 - BBR_RS13165 0.14 -0.5
729,366 + BBR_RS13165 0.16 -1.8
729,432 + BBR_RS13165 0.20 +1.7
729,493 + BBR_RS13165 0.25 +0.4
729,493 + BBR_RS13165 0.25 -0.9
729,501 + BBR_RS13165 0.25 -1.9
729,502 - BBR_RS13165 0.25 -1.6
729,509 - BBR_RS13165 0.26 +0.5
729,509 - BBR_RS13165 0.26 +2.3
729,509 - BBR_RS13165 0.26 +0.1
729,511 + BBR_RS13165 0.26 -1.7
729,513 + BBR_RS13165 0.26 +1.2
729,513 + BBR_RS13165 0.26 -0.6
729,521 - BBR_RS13165 0.27 +0.6
729,545 + BBR_RS13165 0.28 +1.8
729,582 + BBR_RS13165 0.31 +0.7
729,590 - BBR_RS13165 0.31 -0.2
729,590 - BBR_RS13165 0.31 -1.2
729,600 - BBR_RS13165 0.32 -0.9
729,619 + BBR_RS13165 0.33 +0.3
729,655 + BBR_RS13165 0.36 +1.1
729,655 + BBR_RS13165 0.36 -0.7
729,663 - BBR_RS13165 0.36 -0.4
729,665 + BBR_RS13165 0.36 -0.9
729,718 - BBR_RS13165 0.40 +0.2
729,733 + BBR_RS13165 0.41 +0.4
729,733 + BBR_RS13165 0.41 +2.1
729,736 - BBR_RS13165 0.41 +0.3
729,741 - BBR_RS13165 0.42 -1.8
729,777 + BBR_RS13165 0.44 -0.6
729,779 + BBR_RS13165 0.44 +4.4
729,779 + BBR_RS13165 0.44 +1.5
729,779 + BBR_RS13165 0.44 +0.1
729,788 - BBR_RS13165 0.45 +0.2
729,794 + BBR_RS13165 0.45 +1.2
729,846 - BBR_RS13165 0.49 +3.7
729,846 - BBR_RS13165 0.49 +0.9
729,928 - BBR_RS13165 0.54 +0.2
729,997 - BBR_RS13165 0.59 +0.1
730,020 - BBR_RS13165 0.61 +0.2
730,066 + BBR_RS13165 0.64 -1.5
730,070 - BBR_RS13165 0.64 -0.2

Or see this region's nucleotide sequence