Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_839

Experiment: D-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_838 and Ac3H11_839 are separated by 138 nucleotidesAc3H11_839 and Ac3H11_840 are separated by 9 nucleotides Ac3H11_838 - transcriptional regulator, TetR family, at 120,505 to 121,374 _838 Ac3H11_839 - transcriptional regulator, MerR family, at 121,513 to 121,707 _839 Ac3H11_840 - putative cinnamoyl-CoA reductase, at 121,717 to 122,745 _840 Position (kb) 121 122Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.864 kb on - strand, within Ac3H11_838at 120.884 kb on + strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 121.193 kb on + strand, within Ac3H11_838at 121.193 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.788 kb on - strandat 121.788 kb on - strandat 121.798 kb on + strandat 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 122.009 kb on + strand, within Ac3H11_840at 122.279 kb on + strand, within Ac3H11_840at 122.279 kb on + strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
remove
120,863 + Ac3H11_838 0.41 -2.3
120,863 + Ac3H11_838 0.41 -1.1
120,863 + Ac3H11_838 0.41 +1.2
120,863 + Ac3H11_838 0.41 +0.4
120,863 + Ac3H11_838 0.41 +2.7
120,864 - Ac3H11_838 0.41 +1.4
120,884 + Ac3H11_838 0.44 +0.7
120,885 - Ac3H11_838 0.44 +2.2
120,885 - Ac3H11_838 0.44 -1.4
120,885 - Ac3H11_838 0.44 +0.9
120,893 + Ac3H11_838 0.45 +0.7
120,893 + Ac3H11_838 0.45 +1.0
120,893 + Ac3H11_838 0.45 +1.0
120,893 + Ac3H11_838 0.45 +1.2
120,893 + Ac3H11_838 0.45 +0.9
120,894 - Ac3H11_838 0.45 +1.3
120,894 - Ac3H11_838 0.45 +1.3
120,894 - Ac3H11_838 0.45 -0.1
120,894 - Ac3H11_838 0.45 -0.3
121,193 + Ac3H11_838 0.79 +1.4
121,193 + Ac3H11_838 0.79 -0.4
121,226 + Ac3H11_838 0.83 -3.1
121,226 + Ac3H11_838 0.83 -0.2
121,226 + Ac3H11_838 0.83 +0.2
121,226 + Ac3H11_838 0.83 +0.6
121,226 + Ac3H11_838 0.83 -0.8
121,226 + Ac3H11_838 0.83 -2.2
121,227 - Ac3H11_838 0.83 +1.0
121,227 - Ac3H11_838 0.83 +0.2
121,227 - Ac3H11_838 0.83 +0.1
121,227 - Ac3H11_838 0.83 -1.0
121,227 - Ac3H11_838 0.83 +1.2
121,227 - Ac3H11_838 0.83 -3.6
121,227 - Ac3H11_838 0.83 +0.1
121,227 - Ac3H11_838 0.83 +1.3
121,227 - Ac3H11_838 0.83 +0.7
121,232 + Ac3H11_838 0.84 -2.2
121,232 + Ac3H11_838 0.84 -0.3
121,232 + Ac3H11_838 0.84 -0.3
121,232 + Ac3H11_838 0.84 +1.4
121,232 + Ac3H11_838 0.84 +0.2
121,232 + Ac3H11_838 0.84 +3.4
121,232 + Ac3H11_838 0.84 +2.0
121,233 - Ac3H11_838 0.84 +1.6
121,233 - Ac3H11_838 0.84 -3.8
121,233 - Ac3H11_838 0.84 +0.0
121,233 - Ac3H11_838 0.84 +0.0
121,233 - Ac3H11_838 0.84 +0.2
121,233 - Ac3H11_838 0.84 +1.4
121,233 - Ac3H11_838 0.84 -2.7
121,596 - Ac3H11_839 0.43 -0.6
121,596 - Ac3H11_839 0.43 +0.4
121,596 - Ac3H11_839 0.43 +0.3
121,596 - Ac3H11_839 0.43 +2.3
121,596 - Ac3H11_839 0.43 -0.3
121,788 - +1.1
121,788 - -1.8
121,798 + +2.1
121,859 + Ac3H11_840 0.14 +1.4
121,859 + Ac3H11_840 0.14 +0.2
121,859 + Ac3H11_840 0.14 -1.3
121,859 + Ac3H11_840 0.14 +1.1
121,859 + Ac3H11_840 0.14 +0.9
121,859 + Ac3H11_840 0.14 +1.6
121,859 + Ac3H11_840 0.14 +0.8
121,859 + Ac3H11_840 0.14 -2.1
121,859 + Ac3H11_840 0.14 -0.2
121,860 - Ac3H11_840 0.14 -1.2
121,860 - Ac3H11_840 0.14 -1.8
121,860 - Ac3H11_840 0.14 +1.3
121,860 - Ac3H11_840 0.14 -0.4
121,860 - Ac3H11_840 0.14 +0.4
122,009 + Ac3H11_840 0.28 +0.9
122,279 + Ac3H11_840 0.55 +0.6
122,279 + Ac3H11_840 0.55 -0.2
122,280 - Ac3H11_840 0.55 +2.1
122,280 - Ac3H11_840 0.55 +1.3
122,280 - Ac3H11_840 0.55 -0.1
122,701 + +0.2
122,701 + +0.3
122,701 + -0.3
122,701 + -1.7
122,701 + +2.0
122,701 + +0.3
122,702 - +0.7
122,702 - -1.4
122,702 - +1.9
122,702 - -2.2
122,702 - +1.3
122,702 - -0.6

Or see this region's nucleotide sequence