Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4989

Experiment: D-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4988 and Ac3H11_4989 are separated by 101 nucleotidesAc3H11_4989 and Ac3H11_4990 are separated by 218 nucleotidesAc3H11_4990 and Ac3H11_4991 are separated by 16 nucleotides Ac3H11_4988 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 151,932 to 153,734 _4988 Ac3H11_4989 - Enoyl-CoA hydratase (EC 4.2.1.17), at 153,836 to 154,636 _4989 Ac3H11_4990 - Pirin, at 154,855 to 155,604 _4990 Ac3H11_4991 - Cation transport protein chaC, at 155,621 to 156,364 _4991 Position (kb) 153 154 155Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 152.854 kb on - strand, within Ac3H11_4988at 152.919 kb on + strand, within Ac3H11_4988at 152.919 kb on + strand, within Ac3H11_4988at 152.920 kb on - strand, within Ac3H11_4988at 152.931 kb on + strand, within Ac3H11_4988at 152.931 kb on + strand, within Ac3H11_4988at 152.931 kb on + strand, within Ac3H11_4988at 152.932 kb on - strand, within Ac3H11_4988at 152.932 kb on - strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.066 kb on + strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.067 kb on - strand, within Ac3H11_4988at 153.219 kb on + strand, within Ac3H11_4988at 153.220 kb on - strand, within Ac3H11_4988at 153.220 kb on - strand, within Ac3H11_4988at 153.220 kb on - strand, within Ac3H11_4988at 153.220 kb on - strand, within Ac3H11_4988at 153.516 kb on + strand, within Ac3H11_4988at 153.693 kb on + strandat 153.693 kb on + strandat 153.693 kb on + strandat 153.694 kb on - strandat 153.694 kb on - strandat 153.702 kb on + strandat 153.702 kb on + strandat 153.702 kb on + strandat 153.703 kb on - strandat 153.703 kb on - strandat 153.726 kb on + strandat 153.726 kb on + strandat 153.727 kb on - strandat 153.796 kb on + strandat 153.797 kb on - strandat 154.214 kb on + strand, within Ac3H11_4989at 154.214 kb on + strand, within Ac3H11_4989at 154.214 kb on + strand, within Ac3H11_4989at 154.215 kb on - strand, within Ac3H11_4989at 154.253 kb on + strand, within Ac3H11_4989at 154.253 kb on + strand, within Ac3H11_4989at 154.254 kb on - strand, within Ac3H11_4989at 154.254 kb on - strand, within Ac3H11_4989at 154.472 kb on + strand, within Ac3H11_4989at 154.726 kb on - strandat 154.790 kb on + strandat 154.790 kb on + strandat 154.791 kb on - strandat 154.791 kb on - strandat 154.791 kb on - strandat 154.799 kb on + strandat 154.799 kb on + strandat 154.799 kb on + strandat 154.799 kb on + strandat 154.799 kb on + strandat 154.799 kb on + strandat 154.799 kb on + strandat 154.799 kb on + strandat 154.799 kb on + strandat 154.800 kb on - strandat 154.800 kb on - strandat 154.800 kb on - strandat 154.800 kb on - strandat 154.800 kb on - strandat 154.800 kb on - strandat 154.800 kb on - strandat 154.939 kb on + strand, within Ac3H11_4990at 154.940 kb on - strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.053 kb on + strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.054 kb on - strand, within Ac3H11_4990at 155.284 kb on + strand, within Ac3H11_4990at 155.284 kb on + strand, within Ac3H11_4990at 155.284 kb on + strand, within Ac3H11_4990at 155.285 kb on - strand, within Ac3H11_4990at 155.285 kb on - strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.458 kb on + strand, within Ac3H11_4990at 155.459 kb on - strand, within Ac3H11_4990at 155.459 kb on - strand, within Ac3H11_4990at 155.459 kb on - strand, within Ac3H11_4990at 155.459 kb on - strand, within Ac3H11_4990at 155.459 kb on - strand, within Ac3H11_4990at 155.459 kb on - strand, within Ac3H11_4990at 155.459 kb on - strand, within Ac3H11_4990at 155.459 kb on - strand, within Ac3H11_4990at 155.459 kb on - strand, within Ac3H11_4990at 155.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (N)
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152,854 - Ac3H11_4988 0.51 +1.2
152,919 + Ac3H11_4988 0.55 -2.1
152,919 + Ac3H11_4988 0.55 +0.2
152,920 - Ac3H11_4988 0.55 +0.7
152,931 + Ac3H11_4988 0.55 -1.3
152,931 + Ac3H11_4988 0.55 -0.1
152,931 + Ac3H11_4988 0.55 -0.0
152,932 - Ac3H11_4988 0.55 -0.4
152,932 - Ac3H11_4988 0.55 +0.1
153,066 + Ac3H11_4988 0.63 -1.4
153,066 + Ac3H11_4988 0.63 -1.3
153,066 + Ac3H11_4988 0.63 +3.1
153,066 + Ac3H11_4988 0.63 -1.2
153,066 + Ac3H11_4988 0.63 +0.3
153,067 - Ac3H11_4988 0.63 -0.4
153,067 - Ac3H11_4988 0.63 +0.3
153,067 - Ac3H11_4988 0.63 +0.8
153,067 - Ac3H11_4988 0.63 +0.1
153,067 - Ac3H11_4988 0.63 +0.9
153,067 - Ac3H11_4988 0.63 +1.5
153,219 + Ac3H11_4988 0.71 +0.9
153,220 - Ac3H11_4988 0.71 -3.3
153,220 - Ac3H11_4988 0.71 -0.1
153,220 - Ac3H11_4988 0.71 +1.2
153,220 - Ac3H11_4988 0.71 -3.5
153,516 + Ac3H11_4988 0.88 -3.3
153,693 + +2.3
153,693 + +0.1
153,693 + +2.1
153,694 - -1.0
153,694 - +0.1
153,702 + -1.9
153,702 + -1.1
153,702 + +0.7
153,703 - -0.1
153,703 - +0.2
153,726 + -2.3
153,726 + -1.6
153,727 - -0.6
153,796 + -2.4
153,797 - -0.6
154,214 + Ac3H11_4989 0.47 +0.3
154,214 + Ac3H11_4989 0.47 -0.2
154,214 + Ac3H11_4989 0.47 -1.2
154,215 - Ac3H11_4989 0.47 +1.4
154,253 + Ac3H11_4989 0.52 -0.2
154,253 + Ac3H11_4989 0.52 -0.2
154,254 - Ac3H11_4989 0.52 -0.8
154,254 - Ac3H11_4989 0.52 +1.6
154,472 + Ac3H11_4989 0.79 -1.6
154,726 - +2.3
154,790 + +0.2
154,790 + +1.1
154,791 - +1.1
154,791 - -1.9
154,791 - -2.2
154,799 + -1.0
154,799 + -1.1
154,799 + -0.8
154,799 + -0.6
154,799 + -2.3
154,799 + +0.7
154,799 + -1.1
154,799 + -0.7
154,799 + -0.7
154,800 - +0.4
154,800 - +1.3
154,800 - -2.4
154,800 - +0.8
154,800 - -3.3
154,800 - -1.1
154,800 - +0.6
154,939 + Ac3H11_4990 0.11 +1.0
154,940 - Ac3H11_4990 0.11 +0.6
155,053 + Ac3H11_4990 0.26 -3.8
155,053 + Ac3H11_4990 0.26 +0.0
155,053 + Ac3H11_4990 0.26 +0.2
155,053 + Ac3H11_4990 0.26 -0.2
155,053 + Ac3H11_4990 0.26 +1.5
155,053 + Ac3H11_4990 0.26 -4.6
155,053 + Ac3H11_4990 0.26 -0.0
155,053 + Ac3H11_4990 0.26 -0.7
155,053 + Ac3H11_4990 0.26 -0.6
155,053 + Ac3H11_4990 0.26 -1.1
155,053 + Ac3H11_4990 0.26 -2.2
155,054 - Ac3H11_4990 0.27 -0.7
155,054 - Ac3H11_4990 0.27 +1.6
155,054 - Ac3H11_4990 0.27 +1.7
155,054 - Ac3H11_4990 0.27 -2.3
155,054 - Ac3H11_4990 0.27 -0.0
155,054 - Ac3H11_4990 0.27 -0.5
155,054 - Ac3H11_4990 0.27 +0.1
155,054 - Ac3H11_4990 0.27 -1.3
155,054 - Ac3H11_4990 0.27 +1.5
155,054 - Ac3H11_4990 0.27 +0.5
155,054 - Ac3H11_4990 0.27 -3.4
155,284 + Ac3H11_4990 0.57 -0.5
155,284 + Ac3H11_4990 0.57 +0.5
155,284 + Ac3H11_4990 0.57 +1.4
155,285 - Ac3H11_4990 0.57 -0.0
155,285 - Ac3H11_4990 0.57 -0.4
155,458 + Ac3H11_4990 0.80 -0.5
155,458 + Ac3H11_4990 0.80 -2.0
155,458 + Ac3H11_4990 0.80 -0.6
155,458 + Ac3H11_4990 0.80 +0.7
155,458 + Ac3H11_4990 0.80 +1.0
155,458 + Ac3H11_4990 0.80 -0.6
155,458 + Ac3H11_4990 0.80 -0.1
155,458 + Ac3H11_4990 0.80 -0.6
155,458 + Ac3H11_4990 0.80 -1.7
155,458 + Ac3H11_4990 0.80 +0.2
155,459 - Ac3H11_4990 0.81 +0.8
155,459 - Ac3H11_4990 0.81 +0.4
155,459 - Ac3H11_4990 0.81 -1.2
155,459 - Ac3H11_4990 0.81 +1.1
155,459 - Ac3H11_4990 0.81 +0.1
155,459 - Ac3H11_4990 0.81 -3.7
155,459 - Ac3H11_4990 0.81 -0.6
155,459 - Ac3H11_4990 0.81 -2.3
155,459 - Ac3H11_4990 0.81 +1.2
155,603 - -0.7

Or see this region's nucleotide sequence