Experiment: D-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4575 and Ac3H11_4576 are separated by 433 nucleotides Ac3H11_4576 and Ac3H11_4577 are separated by 221 nucleotides Ac3H11_4577 and Ac3H11_4578 overlap by 4 nucleotides Ac3H11_4578 and Ac3H11_4579 are separated by 619 nucleotides
Ac3H11_4575 - Permease of the drug/metabolite transporter (DMT) superfamily, at 173,432 to 174,628
_4575
Ac3H11_4576 - hypothetical protein, at 175,062 to 175,379
_4576
Ac3H11_4577 - Superoxide dismutase SodM-like protein ChrF, at 175,601 to 175,915
_4577
Ac3H11_4578 - Superoxide dismutase [Mn] (EC 1.15.1.1), at 175,912 to 176,232
_4578
Ac3H11_4579 - Chromate transport protein ChrA, at 176,852 to 177,301
_4579
Position (kb) 175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 174.743 kb on + strand at 174.744 kb on - strand at 174.744 kb on - strand at 174.965 kb on + strand at 174.965 kb on + strand at 174.965 kb on + strand at 174.965 kb on + strand at 174.966 kb on - strand at 174.966 kb on - strand at 174.999 kb on + strand at 174.999 kb on + strand at 175.044 kb on - strand at 175.097 kb on - strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.276 kb on + strand, within Ac3H11_4576 at 175.277 kb on - strand, within Ac3H11_4576 at 175.277 kb on - strand, within Ac3H11_4576 at 175.277 kb on - strand, within Ac3H11_4576 at 175.277 kb on - strand at 175.277 kb on - strand, within Ac3H11_4576 at 175.277 kb on - strand, within Ac3H11_4576 at 175.424 kb on + strand at 175.424 kb on + strand at 175.425 kb on - strand at 175.425 kb on - strand at 175.425 kb on - strand at 175.445 kb on + strand at 175.446 kb on - strand at 175.469 kb on - strand at 175.469 kb on - strand at 175.497 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.507 kb on + strand at 175.508 kb on - strand at 175.508 kb on - strand at 175.508 kb on - strand at 175.508 kb on - strand at 175.530 kb on + strand at 175.531 kb on - strand at 175.531 kb on - strand at 175.550 kb on + strand at 175.550 kb on + strand at 175.551 kb on - strand at 175.676 kb on + strand, within Ac3H11_4577 at 175.676 kb on + strand, within Ac3H11_4577 at 175.676 kb on + strand, within Ac3H11_4577 at 175.677 kb on - strand, within Ac3H11_4577 at 175.677 kb on - strand, within Ac3H11_4577 at 175.698 kb on + strand, within Ac3H11_4577 at 175.698 kb on + strand, within Ac3H11_4577 at 175.698 kb on + strand, within Ac3H11_4577 at 175.698 kb on + strand, within Ac3H11_4577 at 175.768 kb on - strand, within Ac3H11_4577 at 175.814 kb on - strand, within Ac3H11_4577 at 175.814 kb on - strand, within Ac3H11_4577 at 175.819 kb on + strand, within Ac3H11_4577 at 175.820 kb on - strand, within Ac3H11_4577 at 175.820 kb on - strand, within Ac3H11_4577 at 175.820 kb on - strand, within Ac3H11_4577 at 175.820 kb on - strand, within Ac3H11_4577 at 175.820 kb on - strand, within Ac3H11_4577 at 175.820 kb on - strand, within Ac3H11_4577 at 175.820 kb on - strand, within Ac3H11_4577 at 175.822 kb on - strand, within Ac3H11_4577 at 175.822 kb on - strand, within Ac3H11_4577 at 175.822 kb on - strand, within Ac3H11_4577 at 175.822 kb on - strand, within Ac3H11_4577 at 175.983 kb on - strand, within Ac3H11_4578 at 176.022 kb on + strand, within Ac3H11_4578 at 176.022 kb on + strand, within Ac3H11_4578 at 176.022 kb on + strand, within Ac3H11_4578 at 176.023 kb on - strand, within Ac3H11_4578 at 176.054 kb on + strand, within Ac3H11_4578 at 176.054 kb on + strand, within Ac3H11_4578 at 176.054 kb on + strand, within Ac3H11_4578 at 176.054 kb on + strand, within Ac3H11_4578 at 176.054 kb on + strand, within Ac3H11_4578 at 176.055 kb on - strand, within Ac3H11_4578 at 176.156 kb on + strand, within Ac3H11_4578 at 176.156 kb on + strand, within Ac3H11_4578 at 176.156 kb on + strand, within Ac3H11_4578 at 176.156 kb on + strand, within Ac3H11_4578 at 176.156 kb on + strand, within Ac3H11_4578 at 176.157 kb on - strand, within Ac3H11_4578 at 176.157 kb on - strand, within Ac3H11_4578 at 176.157 kb on - strand, within Ac3H11_4578 at 176.157 kb on - strand, within Ac3H11_4578 at 176.157 kb on - strand, within Ac3H11_4578 at 176.157 kb on - strand, within Ac3H11_4578 at 176.258 kb on + strand at 176.267 kb on + strand at 176.267 kb on + strand at 176.268 kb on - strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.296 kb on + strand at 176.297 kb on - strand at 176.308 kb on + strand at 176.342 kb on - strand at 176.353 kb on + strand at 176.353 kb on + strand at 176.353 kb on + strand at 176.353 kb on + strand at 176.353 kb on + strand at 176.353 kb on + strand at 176.354 kb on - strand at 176.354 kb on - strand at 176.354 kb on - strand at 176.354 kb on - strand at 176.354 kb on - strand at 176.354 kb on - strand at 176.354 kb on - strand at 176.572 kb on + strand at 176.572 kb on + strand at 176.572 kb on + strand at 176.572 kb on + strand at 176.573 kb on - strand at 176.573 kb on - strand at 176.573 kb on - strand at 176.573 kb on - strand at 176.573 kb on - strand at 176.573 kb on - strand at 176.600 kb on + strand at 176.601 kb on - strand at 176.601 kb on - strand at 176.710 kb on + strand at 176.711 kb on - strand at 176.711 kb on - strand at 176.742 kb on - strand at 176.742 kb on - strand at 176.767 kb on + strand at 176.767 kb on + strand at 176.768 kb on - strand at 176.768 kb on - strand at 176.768 kb on - strand at 176.825 kb on + strand at 176.825 kb on + strand at 176.825 kb on + strand at 176.825 kb on + strand at 176.826 kb on - strand at 176.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (N) remove 174,743 + -1.2 174,744 - -1.0 174,744 - +1.1 174,965 + -2.1 174,965 + +1.7 174,965 + +0.6 174,965 + -0.9 174,966 - -1.0 174,966 - +0.6 174,999 + +0.2 174,999 + -0.7 175,044 - +0.1 175,097 - Ac3H11_4576 0.11 +1.8 175,276 + Ac3H11_4576 0.67 -2.1 175,276 + Ac3H11_4576 0.67 +0.5 175,276 + Ac3H11_4576 0.67 -0.4 175,276 + Ac3H11_4576 0.67 -0.7 175,276 + Ac3H11_4576 0.67 +0.5 175,276 + Ac3H11_4576 0.67 -2.3 175,276 + Ac3H11_4576 0.67 +0.6 175,277 - Ac3H11_4576 0.68 +0.6 175,277 - Ac3H11_4576 0.68 +0.4 175,277 - Ac3H11_4576 0.68 +0.3 175,277 - +0.6 175,277 - Ac3H11_4576 0.68 -1.8 175,277 - Ac3H11_4576 0.68 -1.8 175,424 + +0.2 175,424 + -0.1 175,425 - -1.7 175,425 - +0.1 175,425 - +0.2 175,445 + -0.1 175,446 - -0.2 175,469 - -0.4 175,469 - +1.1 175,497 + +0.8 175,507 + -0.6 175,507 + +0.5 175,507 + +0.1 175,507 + +0.0 175,507 + +0.7 175,507 + -1.0 175,508 - +0.4 175,508 - -0.1 175,508 - +0.9 175,508 - +0.3 175,530 + +1.8 175,531 - +0.7 175,531 - -1.0 175,550 + -1.7 175,550 + -1.4 175,551 - -1.9 175,676 + Ac3H11_4577 0.24 -3.0 175,676 + Ac3H11_4577 0.24 -0.8 175,676 + Ac3H11_4577 0.24 -1.0 175,677 - Ac3H11_4577 0.24 +1.7 175,677 - Ac3H11_4577 0.24 -2.3 175,698 + Ac3H11_4577 0.31 +1.0 175,698 + Ac3H11_4577 0.31 +0.4 175,698 + Ac3H11_4577 0.31 -0.4 175,698 + Ac3H11_4577 0.31 -0.1 175,768 - Ac3H11_4577 0.53 +0.5 175,814 - Ac3H11_4577 0.68 -0.3 175,814 - Ac3H11_4577 0.68 -0.7 175,819 + Ac3H11_4577 0.69 -1.0 175,820 - Ac3H11_4577 0.70 -1.2 175,820 - Ac3H11_4577 0.70 +1.2 175,820 - Ac3H11_4577 0.70 -1.7 175,820 - Ac3H11_4577 0.70 -1.0 175,820 - Ac3H11_4577 0.70 +1.4 175,820 - Ac3H11_4577 0.70 +0.6 175,820 - Ac3H11_4577 0.70 +1.0 175,822 - Ac3H11_4577 0.70 +0.3 175,822 - Ac3H11_4577 0.70 -1.3 175,822 - Ac3H11_4577 0.70 -1.8 175,822 - Ac3H11_4577 0.70 +1.1 175,983 - Ac3H11_4578 0.22 -3.0 176,022 + Ac3H11_4578 0.34 -3.4 176,022 + Ac3H11_4578 0.34 -0.5 176,022 + Ac3H11_4578 0.34 -2.1 176,023 - Ac3H11_4578 0.35 -0.1 176,054 + Ac3H11_4578 0.44 -2.7 176,054 + Ac3H11_4578 0.44 +0.3 176,054 + Ac3H11_4578 0.44 -1.2 176,054 + Ac3H11_4578 0.44 -3.4 176,054 + Ac3H11_4578 0.44 -1.6 176,055 - Ac3H11_4578 0.45 +0.4 176,156 + Ac3H11_4578 0.76 +0.3 176,156 + Ac3H11_4578 0.76 +0.2 176,156 + Ac3H11_4578 0.76 +0.3 176,156 + Ac3H11_4578 0.76 -2.4 176,156 + Ac3H11_4578 0.76 +0.5 176,157 - Ac3H11_4578 0.76 -0.3 176,157 - Ac3H11_4578 0.76 -1.0 176,157 - Ac3H11_4578 0.76 -0.4 176,157 - Ac3H11_4578 0.76 -0.4 176,157 - Ac3H11_4578 0.76 +0.7 176,157 - Ac3H11_4578 0.76 +1.3 176,258 + +1.6 176,267 + +0.1 176,267 + -0.4 176,268 - -1.8 176,296 + -0.6 176,296 + +0.3 176,296 + +0.7 176,296 + +0.4 176,296 + +0.6 176,296 + -0.0 176,296 + -0.4 176,296 + +0.5 176,296 + -3.2 176,296 + +0.2 176,296 + +1.1 176,296 + -1.7 176,297 - +1.5 176,308 + -3.7 176,342 - -1.3 176,353 + +0.8 176,353 + +0.1 176,353 + +1.2 176,353 + -1.7 176,353 + +2.0 176,353 + -1.8 176,354 - +0.0 176,354 - -0.6 176,354 - -0.4 176,354 - +1.2 176,354 - -0.2 176,354 - +0.7 176,354 - -0.7 176,572 + +1.9 176,572 + -0.1 176,572 + -0.7 176,572 + -3.4 176,573 - -0.7 176,573 - +0.8 176,573 - -0.0 176,573 - +1.6 176,573 - -2.5 176,573 - +0.9 176,600 + -1.6 176,601 - +0.5 176,601 - +0.1 176,710 + -0.2 176,711 - -2.6 176,711 - +0.4 176,742 - +1.0 176,742 - +0.7 176,767 + +3.0 176,767 + +0.3 176,768 - +0.6 176,768 - +0.7 176,768 - -0.7 176,825 + +1.8 176,825 + +2.6 176,825 + +0.9 176,825 + +1.9 176,826 - +2.2 176,881 - -1.1
Or see this region's nucleotide sequence